Wall clock time and date at job start Tue Mar 31 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99943 * 2 1 4 4 C 1.50709 * 109.46960 * 270.00259 * 3 2 1 5 5 H 1.08001 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99856 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99868 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47402 * 89.99582 * 8 6 4 10 10 H 1.48503 * 109.46906 * 209.99710 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99347 * 8 6 4 12 12 C 1.34779 * 119.99949 * 180.02562 * 2 1 3 13 13 O 1.21607 * 119.99763 * 181.53553 * 12 2 1 14 14 C 1.47376 * 119.99733 * 1.53532 * 12 2 1 15 15 C 1.36410 * 127.19485 * 346.30415 * 14 12 2 16 16 O 1.33659 * 108.39836 * 180.02562 * 15 14 12 17 17 C 1.34215 * 110.90497 * 359.97438 * 16 15 14 18 18 S 1.76197 * 125.43244 * 179.97438 * 17 16 15 19 19 N 1.65599 * 107.22047 * 270.02652 * 18 17 16 20 20 O 1.42102 * 106.40455 * 23.56831 * 18 17 16 21 21 O 1.42105 * 106.39981 * 156.48770 * 18 17 16 22 22 C 1.34174 * 109.12656 * 0.02562 * 17 16 15 23 23 H 1.09005 * 109.46749 * 264.03907 * 1 2 3 24 24 H 1.09003 * 109.47002 * 24.03212 * 1 2 3 25 25 H 1.08991 * 109.47689 * 144.03765 * 1 2 3 26 26 H 1.08997 * 109.47441 * 30.00258 * 3 2 1 27 27 H 1.08995 * 109.46827 * 150.00804 * 3 2 1 28 28 H 0.97001 * 119.99120 * 179.97438 * 7 6 4 29 29 H 1.08004 * 125.80511 * 0.04045 * 15 14 12 30 30 H 0.97003 * 119.99846 * 150.00359 * 19 18 17 31 31 H 0.96998 * 120.00060 * 330.00333 * 19 18 17 32 32 H 1.08002 * 127.02062 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4374 3.4171 -3.4340 9 1 2.3076 4.2606 -3.8999 10 1 4.6981 4.1995 -3.4970 11 1 3.5537 2.2201 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3546 -1.1674 0.0277 14 6 1.4023 -2.4433 -0.0353 15 6 0.0701 -2.6328 0.1885 16 8 -0.1975 -3.9363 0.0628 17 6 0.9134 -4.6264 -0.2388 18 16 0.9975 -6.3684 -0.4891 19 7 1.3097 -7.0606 0.9826 20 8 -0.3101 -6.7843 -0.8588 21 8 2.1445 -6.6032 -1.2944 22 6 1.9499 -3.7781 -0.3182 23 1 -0.3633 -0.1067 1.0222 24 1 -0.3633 0.9386 -0.4185 25 1 -0.3634 -0.8317 -0.6034 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 4.0316 4.4431 -0.8506 29 1 -0.6467 -1.8608 0.4266 30 1 0.9825 -7.9526 1.1782 31 1 1.8198 -6.5742 1.6489 32 1 2.9767 -4.0252 -0.5445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319733708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:18 Heat of formation + Delta-G solvation = -105.023127 kcal Electronic energy + Delta-G solvation = -20489.151632 eV Core-core repulsion = 16964.416335 eV Total energy + Delta-G solvation = -3524.735297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.85137 -40.52323 -38.43260 -37.13783 -36.80642 -34.98552 -34.17456 -34.07292 -31.87867 -29.55102 -27.92055 -25.75284 -23.58513 -23.46122 -21.54214 -20.43058 -19.31409 -18.74900 -18.59984 -18.07770 -17.54758 -17.28924 -17.19152 -16.78843 -16.27940 -16.15730 -15.94340 -14.75979 -14.43875 -14.40353 -14.22062 -13.90655 -13.44037 -13.41290 -13.35948 -13.29009 -13.08130 -12.84455 -12.73445 -12.49437 -12.23255 -11.78484 -11.46731 -11.27028 -11.01992 -10.67179 -10.43632 -9.57032 -8.26737 -6.41456 -0.91381 -0.10739 0.36827 1.35133 1.38145 1.47955 1.52987 1.96138 2.19633 2.32842 2.40217 2.52479 3.03621 3.30053 3.48646 3.59379 3.83485 4.09916 4.16945 4.50451 4.53084 4.71124 4.85294 4.97390 5.18044 5.22310 5.42124 5.47435 5.74710 6.00002 6.30472 6.56891 6.67373 7.18189 7.33358 8.80500 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.003671 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.775632 B = 7626.211444 C = 7873.238609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.598 5.598 3 C 0.259 3.741 4 C -0.549 4.549 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.564 3.436 13 O -0.594 6.594 14 C -0.273 4.273 15 C 0.079 3.921 16 O -0.117 6.117 17 C -0.577 4.577 18 S 2.773 3.227 19 N -1.223 6.223 20 O -0.971 6.971 21 O -0.966 6.966 22 C -0.048 4.048 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.001 0.999 28 H 0.269 0.731 29 H 0.281 0.719 30 H 0.437 0.563 31 H 0.432 0.568 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 -18.910 5.727 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.328 5.328 3 C 0.138 3.862 4 C -0.587 4.587 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.354 3.646 13 O -0.476 6.476 14 C -0.278 4.278 15 C 0.006 3.994 16 O -0.009 6.009 17 C -0.704 4.704 18 S 2.851 3.149 19 N -0.906 5.906 20 O -0.961 6.961 21 O -0.956 6.956 22 C -0.069 4.069 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.295 0.705 30 H 0.272 0.728 31 H 0.262 0.738 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.395 -19.157 4.856 22.812 hybrid contribution 1.131 1.468 -0.114 1.857 sum -10.264 -17.688 4.743 20.993 Atomic orbital electron populations 1.22649 0.78037 1.05161 1.03488 1.48001 1.08552 1.05957 1.70337 1.18872 0.91428 0.79652 0.96203 1.21695 1.37337 1.06693 0.93004 0.93041 1.25810 0.94732 0.96358 1.01904 1.70035 1.38670 1.14801 1.32949 0.85432 0.78236 0.78142 0.79104 1.18568 1.20525 1.20166 1.17711 0.86525 0.83512 0.76866 1.90730 1.15784 1.87882 1.53249 1.21728 0.95715 0.94111 1.16266 1.26924 0.96095 0.84318 0.92086 1.83990 1.32068 1.18194 1.66668 1.35460 0.89634 1.21938 1.23357 0.99986 0.72795 0.69436 0.72710 1.52622 1.72439 1.30147 1.35384 1.93577 1.40501 1.79777 1.82200 1.93671 1.52823 1.82146 1.66926 1.23167 1.00757 0.90220 0.92774 0.88530 0.89776 0.88702 0.94598 0.98046 0.92251 0.70480 0.72815 0.73797 0.80598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.21 8.78 127.77 1.12 2.33 16 2 N -0.60 -24.61 2.86 -855.09 -2.44 -27.05 16 3 C 0.26 13.66 5.15 85.64 0.44 14.10 16 4 C -0.55 -31.36 9.39 25.60 0.24 -31.12 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 8 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.56 24.23 7.67 86.65 0.66 24.89 16 13 O -0.59 -31.87 16.57 -4.05 -0.07 -31.94 16 14 C -0.27 -8.55 6.10 -18.99 -0.12 -8.66 16 15 C 0.08 1.66 9.99 67.39 0.67 2.33 16 16 O -0.12 -2.45 10.52 4.40 0.05 -2.40 16 17 C -0.58 -12.70 7.32 66.89 0.49 -12.21 16 18 S 2.77 48.38 6.43 -56.49 -0.36 48.02 16 19 N -1.22 -9.66 9.52 37.02 0.35 -9.31 16 20 O -0.97 -22.19 18.02 -127.90 -2.30 -24.49 16 21 O -0.97 -23.47 17.82 -128.00 -2.28 -25.75 16 22 C -0.05 -1.33 10.73 23.65 0.25 -1.08 16 23 H 0.10 1.65 7.62 -2.38 -0.02 1.63 16 24 H 0.08 2.24 8.03 -2.39 -0.02 2.22 16 25 H 0.10 1.84 4.95 -2.39 -0.01 1.82 16 26 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 27 H 0.00 0.09 7.40 -2.39 -0.02 0.07 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.28 3.25 4.64 -2.91 -0.01 3.24 16 30 H 0.44 1.49 8.96 -96.74 -0.87 0.62 16 31 H 0.43 1.86 8.96 -96.75 -0.87 0.99 16 32 H 0.18 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -88.51 299.28 -1.05 -89.56 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -0.53 Total: -0.22 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 4.23 Total: -8.29 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -1.81 Total: -91.18 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -4.61 Total: -84.59 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 48.38 SS G_CDS: -0.36 Total: 48.02 kcal Total: -88.51 -1.05 -89.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319733708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.468 kcal (2) G-P(sol) polarization free energy of solvation -88.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds