Wall clock time and date at job start Tue Mar 31 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47462 * 299.99973 * 3 2 1 6 6 H 1.48504 * 109.47173 * 60.00272 * 3 2 1 7 7 C 1.38803 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00197 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99741 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00302 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99779 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99660 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46497 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.97000 * 119.99511 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47682 * 60.00186 * 10 9 7 25 25 H 1.09003 * 109.47324 * 299.99538 * 10 9 7 26 26 H 0.97000 * 119.99831 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.46680 * 60.00313 * 14 13 11 28 28 H 1.08994 * 109.47265 * 300.00147 * 14 13 11 29 29 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 30 30 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 31 31 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 32 32 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 33 33 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 34 34 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 35 35 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 36 36 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.4849 -8.6837 -0.0032 16 8 4.6245 -8.2689 -0.0036 17 7 3.2508 -10.0110 -0.0041 18 6 1.8764 -10.5370 -0.0030 19 6 1.7572 -11.5754 1.1185 20 8 2.8060 -12.5374 0.9840 21 6 4.1210 -11.9922 1.1168 22 6 4.3617 -10.9761 -0.0049 23 1 -0.4849 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8894 25 1 3.1245 -3.7314 -0.8906 26 1 3.8010 -6.1834 -0.0022 27 1 1.7214 -7.8749 -0.8916 28 1 1.7222 -7.8753 0.8883 29 1 1.6634 -11.0074 -0.9629 30 1 1.1716 -9.7244 0.1727 31 1 0.7919 -12.0770 1.0491 32 1 1.8406 -11.0785 2.0850 33 1 4.2134 -11.4962 2.0830 34 1 4.8562 -12.7938 1.0471 35 1 5.3022 -10.4533 0.1692 36 1 4.3997 -11.4914 -0.9646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320663200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:29 Heat of formation + Delta-G solvation = -108.647883 kcal Electronic energy + Delta-G solvation = -20049.233457 eV Core-core repulsion = 16660.174073 eV Total energy + Delta-G solvation = -3389.059384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.86089 -39.29687 -38.47034 -35.27054 -34.33953 -32.42777 -32.07341 -30.14632 -28.62062 -26.75012 -25.45318 -24.50188 -22.57091 -20.47839 -19.79459 -18.18322 -17.45028 -17.09224 -16.53030 -16.42588 -16.09879 -15.70293 -15.39788 -15.29476 -14.92604 -14.80052 -13.99194 -13.96086 -13.77321 -13.09806 -12.98896 -12.90551 -12.56882 -12.29838 -11.92511 -11.82280 -11.26011 -11.06515 -11.01912 -10.76201 -10.71536 -10.26573 -9.80826 -9.53123 -9.14124 -9.07879 -9.00876 -8.24650 -6.50504 -6.21993 -3.92421 2.13247 2.24310 3.01701 3.03096 3.22228 3.28514 3.29029 3.33825 3.69349 3.98023 4.19038 4.20441 4.44074 4.53271 4.63801 4.71823 4.91803 5.04696 5.08764 5.10104 5.13672 5.20990 5.24322 5.25613 5.39376 5.65173 5.85677 5.89297 6.15521 6.39882 6.54984 6.79619 7.59990 7.60931 7.66688 8.35964 8.51599 9.23804 10.85536 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.049508 B = 0.002636 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.427101 B =10621.390229 C =11047.882289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.729 5.729 14 C 0.104 3.896 15 C 0.516 3.484 16 O -0.532 6.532 17 N -0.616 5.616 18 C 0.067 3.933 19 C 0.046 3.954 20 O -0.379 6.379 21 C 0.048 3.952 22 C 0.077 3.923 23 H 0.268 0.732 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.410 0.590 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -24.730 1.185 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.323 3.677 12 O -0.393 6.393 13 N -0.387 5.387 14 C -0.023 4.023 15 C 0.304 3.696 16 O -0.408 6.408 17 N -0.352 5.352 18 C -0.056 4.056 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.030 4.030 22 C -0.046 4.046 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.247 0.753 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.284 -24.919 1.149 25.499 hybrid contribution 2.383 1.525 0.002 2.829 sum 7.667 -23.394 1.150 24.645 Atomic orbital electron populations 1.70028 1.05951 1.27350 1.47021 1.24999 0.95041 0.99059 0.94528 0.86104 0.79622 0.81816 0.77884 1.19588 1.20568 1.20566 1.22915 0.94997 0.91561 1.58776 0.90798 1.85348 1.04855 0.96374 1.96743 1.23520 1.06667 0.94793 1.05288 1.20345 0.86311 0.86188 0.74879 1.90698 1.15280 1.85593 1.47754 1.45801 1.11262 1.03679 1.77961 1.21005 0.94303 0.82411 1.04629 1.20714 0.90852 0.82615 0.75424 1.90701 1.23283 1.77271 1.49550 1.48066 1.07558 1.05295 1.74270 1.22583 0.83075 0.98952 1.00961 1.23011 0.92003 0.90765 0.97351 1.87985 1.14356 1.34137 1.93280 1.23001 0.85200 0.97280 0.97508 1.22317 0.91444 0.90738 1.00071 0.92241 0.88957 0.88953 0.75275 0.88381 0.88472 0.89773 0.88011 0.87141 0.92255 0.92437 0.87406 0.87848 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.54 10.04 7.85 -10.98 -0.09 9.95 16 12 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 13 N -0.73 -10.54 5.53 -61.47 -0.34 -10.88 16 14 C 0.10 1.19 4.53 -5.19 -0.02 1.17 16 15 C 0.52 5.71 7.78 -10.98 -0.09 5.62 16 16 O -0.53 -7.46 15.14 5.56 0.08 -7.38 16 17 N -0.62 -5.19 3.02 -172.29 -0.52 -5.71 16 18 C 0.07 0.40 6.54 -3.52 -0.02 0.38 16 19 C 0.05 0.26 6.98 37.31 0.26 0.52 16 20 O -0.38 -2.85 10.74 -35.23 -0.38 -3.23 16 21 C 0.05 0.29 6.98 37.29 0.26 0.55 16 22 C 0.08 0.56 6.64 -3.55 -0.02 0.53 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 26 H 0.41 5.58 7.44 -40.82 -0.30 5.28 16 27 H 0.10 1.05 8.01 -51.93 -0.42 0.63 16 28 H 0.10 1.02 7.66 -51.93 -0.40 0.62 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.51 6.05 -51.93 -0.31 0.20 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.84 7.08 -51.93 -0.37 0.48 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -36.05 320.90 -6.76 -42.81 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.73 Total: 0.76 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 0.70 Total: 2.84 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.13 Total: -42.01 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.21 Total: -21.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.05 -6.76 -42.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320663200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.841 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds