Wall clock time and date at job start Tue Mar 31 2020 04:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47462 * 299.99973 * 3 2 1 6 6 H 1.48504 * 109.47173 * 60.00272 * 3 2 1 7 7 C 1.38803 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00197 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99612 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99741 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00302 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99779 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99660 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46497 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00509 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99389 * 180.02562 * 15 14 13 18 18 C 1.47164 * 120.94464 * 359.97438 * 17 15 14 19 19 C 1.53300 * 108.37481 * 230.47489 * 18 17 15 20 20 O 1.42961 * 109.26618 * 307.77372 * 19 18 17 21 21 C 1.42967 * 114.16831 * 62.55217 * 20 19 18 22 22 C 1.47157 * 120.97899 * 180.02562 * 17 15 14 23 23 H 0.97000 * 119.99511 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47682 * 60.00186 * 10 9 7 25 25 H 1.09003 * 109.47324 * 299.99538 * 10 9 7 26 26 H 0.97000 * 119.99831 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.46680 * 60.00313 * 14 13 11 28 28 H 1.08994 * 109.47265 * 300.00147 * 14 13 11 29 29 H 1.08996 * 109.64217 * 110.78153 * 18 17 15 30 30 H 1.08999 * 109.72598 * 350.21805 * 18 17 15 31 31 H 1.09002 * 109.51290 * 187.82368 * 19 18 17 32 32 H 1.08997 * 109.51158 * 67.72466 * 19 18 17 33 33 H 1.09005 * 109.50496 * 57.34540 * 21 20 19 34 34 H 1.08995 * 109.51193 * 177.44508 * 21 20 19 35 35 H 1.09004 * 109.67827 * 9.75528 * 22 17 15 36 36 H 1.09000 * 109.68235 * 249.19910 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.4849 -8.6837 -0.0032 16 8 4.6245 -8.2689 -0.0036 17 7 3.2508 -10.0110 -0.0041 18 6 1.8764 -10.5370 -0.0030 19 6 1.7572 -11.5754 1.1185 20 8 2.8060 -12.5374 0.9840 21 6 4.1210 -11.9922 1.1168 22 6 4.3617 -10.9761 -0.0049 23 1 -0.4849 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8894 25 1 3.1245 -3.7314 -0.8906 26 1 3.8010 -6.1834 -0.0022 27 1 1.7214 -7.8749 -0.8916 28 1 1.7222 -7.8753 0.8883 29 1 1.6634 -11.0074 -0.9629 30 1 1.1716 -9.7244 0.1727 31 1 0.7919 -12.0770 1.0491 32 1 1.8406 -11.0785 2.0850 33 1 4.2134 -11.4962 2.0830 34 1 4.8562 -12.7938 1.0471 35 1 5.3022 -10.4533 0.1692 36 1 4.3997 -11.4914 -0.9646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320663200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:28 Heat of formation + Delta-G solvation = -136.731600 kcal Electronic energy + Delta-G solvation = -20050.451258 eV Core-core repulsion = 16660.174073 eV Total energy + Delta-G solvation = -3390.277185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.67293 -40.50257 -39.34675 -35.96804 -35.61014 -34.58654 -32.66049 -31.49577 -29.50572 -27.88298 -27.44109 -25.05830 -23.23131 -21.84431 -20.58558 -19.87411 -18.63308 -18.01817 -17.47620 -17.28829 -17.17008 -16.88295 -16.49032 -16.36993 -16.05562 -15.89288 -15.65590 -14.96931 -14.80740 -14.48266 -14.27878 -13.99156 -13.50357 -13.32189 -13.16379 -12.91161 -12.85242 -12.61227 -12.37573 -11.82344 -11.72661 -11.30919 -11.15946 -11.11641 -11.06516 -10.32220 -10.29795 -9.74288 -8.66652 -8.35413 -6.12911 1.20102 1.27508 1.41264 1.41408 1.52766 1.54130 1.66127 2.25422 2.29425 2.84326 2.98901 3.17613 3.30258 3.69994 3.88573 3.94624 4.08085 4.10697 4.16985 4.25063 4.27678 4.30672 4.44713 4.50497 4.62985 4.73513 4.81971 4.90348 5.14600 5.27206 5.42496 6.04211 6.08191 6.20027 6.34155 6.79856 7.06396 7.10098 8.74015 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.049508 B = 0.002636 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.427101 B =10621.390229 C =11047.882289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.140 6.140 10 C -0.132 4.132 11 C 0.542 3.458 12 O -0.555 6.555 13 N -0.711 5.711 14 C 0.102 3.898 15 C 0.518 3.482 16 O -0.567 6.567 17 N -0.611 5.611 18 C 0.063 3.937 19 C 0.044 3.956 20 O -0.394 6.394 21 C 0.051 3.949 22 C 0.075 3.925 23 H 0.272 0.728 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.416 0.584 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -25.600 1.180 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.087 5.913 10 C -0.283 4.283 11 C 0.328 3.672 12 O -0.432 6.432 13 N -0.368 5.368 14 C -0.025 4.025 15 C 0.307 3.693 16 O -0.446 6.446 17 N -0.345 5.345 18 C -0.059 4.059 19 C -0.033 4.033 20 O -0.312 6.312 21 C -0.026 4.026 22 C -0.048 4.048 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.255 0.745 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.493 -25.859 1.146 26.686 hybrid contribution 2.033 1.613 0.002 2.595 sum 8.526 -24.246 1.148 25.727 Atomic orbital electron populations 1.70176 1.07870 1.28587 1.48007 1.26107 0.95992 1.03239 0.93730 0.84910 0.78527 0.76396 0.78139 1.18276 1.19854 1.19832 1.23241 0.95350 0.92111 1.58845 0.90092 1.85447 1.09946 0.98897 1.97043 1.23371 1.03879 0.94251 1.06847 1.19938 0.86011 0.86272 0.74969 1.90690 1.16700 1.85930 1.49927 1.45565 1.11054 1.04202 1.75986 1.21209 0.94745 0.80625 1.05913 1.20566 0.89990 0.83407 0.75371 1.90689 1.24314 1.77996 1.51633 1.48154 1.09071 1.04588 1.72659 1.22812 0.81771 0.99450 1.01875 1.23153 0.92519 0.90596 0.97013 1.87971 1.14974 1.35019 1.93276 1.23053 0.85347 0.97529 0.96696 1.22430 0.90644 0.90554 1.01132 0.91926 0.87311 0.87339 0.74535 0.87166 0.87106 0.88575 0.87030 0.85089 0.92409 0.92825 0.85437 0.88904 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.40 9.50 67.96 0.65 -30.76 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.14 -7.75 20.57 -56.49 -1.16 -8.92 16 10 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 11 C 0.54 19.88 7.85 87.66 0.69 20.57 16 12 O -0.55 -24.25 15.86 -3.04 -0.05 -24.30 16 13 N -0.71 -19.56 5.53 -466.78 -2.58 -22.14 16 14 C 0.10 2.16 4.53 85.63 0.39 2.55 16 15 C 0.52 10.74 7.78 87.66 0.68 11.42 16 16 O -0.57 -15.40 15.14 -3.02 -0.05 -15.45 16 17 N -0.61 -9.25 3.02 -817.38 -2.47 -11.72 16 18 C 0.06 0.61 6.54 86.35 0.56 1.17 16 19 C 0.04 0.40 6.98 72.08 0.50 0.90 16 20 O -0.39 -5.11 10.74 -148.98 -1.60 -6.71 16 21 C 0.05 0.54 6.98 72.07 0.50 1.04 16 22 C 0.07 0.98 6.64 86.34 0.57 1.55 16 23 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 25 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 26 H 0.42 10.69 7.44 -92.71 -0.69 10.00 16 27 H 0.11 2.14 8.01 -2.39 -0.02 2.12 16 28 H 0.11 2.11 7.66 -2.39 -0.02 2.09 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.86 6.05 -2.39 -0.01 0.85 16 31 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.44 7.08 -2.38 -0.02 1.43 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.35 320.90 0.27 -78.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.41 Total: 15.85 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.45 Total: 4.82 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -4.76 Total: -89.20 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -1.69 Total: -46.46 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.92 kcal Total: -78.35 0.27 -78.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320663200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.651 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds