Wall clock time and date at job start Tue Mar 31 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46498 * 109.44009 * 181.23934 * 12 11 10 14 14 C 1.34774 * 120.00360 * 84.79625 * 13 12 11 15 15 O 1.21587 * 120.00015 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.46505 * 120.00225 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47343 * 154.99832 * 17 16 14 19 19 O 1.42903 * 109.47277 * 64.99746 * 18 17 16 20 20 C 1.53005 * 109.46620 * 274.99750 * 17 16 14 21 21 O 1.42903 * 109.46805 * 294.99406 * 20 17 16 22 22 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 23 23 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 26 26 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 27 27 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 28 28 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 29 29 H 1.08998 * 109.34532 * 301.12811 * 12 11 10 30 30 H 0.97005 * 119.99849 * 264.79501 * 13 12 11 31 31 H 0.97005 * 119.99908 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47079 * 34.98918 * 17 16 14 33 33 H 1.08997 * 109.47148 * 185.00173 * 18 17 16 34 34 H 1.09008 * 109.46562 * 304.99604 * 18 17 16 35 35 H 0.96698 * 113.99895 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47314 * 54.99836 * 20 17 16 37 37 H 1.09006 * 109.46944 * 174.99981 * 20 17 16 38 38 H 0.96705 * 113.99641 * 180.02562 * 21 20 17 39 39 H 1.09002 * 109.49555 * 178.74703 * 22 12 11 40 40 H 1.08992 * 109.52043 * 58.66705 * 22 12 11 41 41 H 1.08996 * 109.59017 * 246.20330 * 23 9 7 42 42 H 1.09009 * 109.58200 * 6.48305 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0396 -5.6477 2.9303 14 6 -0.0052 -6.2698 3.5115 15 8 -1.1367 -6.0450 3.1277 16 7 0.2042 -7.1404 4.5188 17 6 -0.9314 -7.8171 5.1502 18 6 -0.4601 -9.1341 5.7700 19 8 0.4551 -8.8599 6.8327 20 6 -1.5164 -6.9198 6.2428 21 8 -0.5528 -6.7471 7.2839 22 6 2.0674 -4.6174 0.9645 23 6 1.8137 -3.6528 -0.1983 24 1 -0.4850 0.8400 -0.0004 25 1 0.0993 -1.3344 1.6687 26 1 -0.6775 -2.6380 0.7360 27 1 1.3427 -2.9695 3.0019 28 1 -0.3882 -3.3843 3.0516 29 1 -0.0283 -5.0410 1.2304 30 1 1.9424 -5.8268 3.2368 31 1 1.1070 -7.3195 4.8253 32 1 -1.6955 -8.0213 4.4001 33 1 -1.3188 -9.6793 6.1615 34 1 0.0365 -9.7364 5.0091 35 1 0.7959 -9.6510 7.2722 36 1 -1.7705 -5.9487 5.8181 37 1 -2.4141 -7.3836 6.6519 38 1 -0.8566 -6.1882 8.0122 39 1 2.3041 -5.6063 0.5718 40 1 2.9027 -4.2541 1.5630 41 1 1.0401 -4.0603 -0.8491 42 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322198693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:26 Heat of formation + Delta-G solvation = -105.741648 kcal Electronic energy + Delta-G solvation = -23693.408483 eV Core-core repulsion = 20095.274009 eV Total energy + Delta-G solvation = -3598.134474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.168 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.05163 -38.18039 -37.13216 -36.09402 -34.39488 -34.10115 -32.10815 -30.39211 -29.80278 -28.85947 -25.89970 -24.92131 -22.41366 -22.14066 -21.03097 -20.39920 -19.39608 -18.32120 -17.62697 -16.93756 -16.82267 -16.41568 -15.34178 -15.19558 -14.72512 -14.41693 -14.07423 -13.80841 -13.70701 -13.58631 -13.43872 -12.94869 -12.66526 -12.37538 -12.33648 -12.15668 -11.42716 -11.24260 -11.06545 -10.87447 -10.68348 -10.34071 -10.31260 -10.20691 -10.05144 -9.95507 -9.85263 -9.69998 -9.49540 -9.05331 -8.54292 -8.32547 -6.63785 -5.74329 -3.17501 2.85871 3.41254 3.44820 3.47063 3.48169 3.99199 4.23806 4.42682 4.52997 4.65605 4.95421 5.07629 5.26231 5.32534 5.36079 5.44541 5.51967 5.57599 5.70239 5.72313 5.90889 6.15675 6.30139 6.44312 6.52863 6.55730 6.67185 6.71070 6.83587 6.97864 7.02934 7.23263 7.43050 7.44992 7.63966 7.73859 7.83296 8.26698 8.49538 8.86117 9.25277 9.88679 10.45735 11.34142 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.003286 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.644487 B = 8519.636235 C = 8822.774242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.701 3.299 15 O -0.595 6.595 16 N -0.736 5.736 17 C 0.169 3.831 18 C 0.072 3.928 19 O -0.542 6.542 20 C 0.065 3.935 21 O -0.543 6.543 22 C -0.138 4.138 23 C 0.149 3.851 24 H 0.254 0.746 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.390 0.610 31 H 0.400 0.600 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.369 0.631 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.366 0.634 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.020 0.980 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -18.901 13.105 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.401 3.599 15 O -0.474 6.474 16 N -0.392 5.392 17 C 0.062 3.938 18 C -0.007 4.007 19 O -0.345 6.345 20 C -0.015 4.015 21 O -0.346 6.346 22 C -0.178 4.178 23 C 0.022 3.978 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.223 0.777 31 H 0.234 0.766 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.214 0.786 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.211 0.789 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.527 -18.291 12.117 21.947 hybrid contribution 0.903 0.462 0.849 1.323 sum 0.376 -17.829 12.965 22.048 Atomic orbital electron populations 1.70029 1.05258 1.25626 1.53633 1.25063 0.95279 0.98427 1.00839 0.86368 0.78892 0.83394 0.78075 1.20907 1.21652 1.21057 1.19134 0.92509 0.84843 1.41979 0.91716 1.44097 1.35930 1.01515 1.50002 1.20749 0.88630 0.98046 0.87800 1.22577 1.00393 0.95328 1.00370 1.20893 0.98439 0.88089 0.86052 1.45507 1.07806 1.46809 1.39104 1.16051 0.85265 0.78989 0.79569 1.90912 1.21499 1.68073 1.66898 1.44995 1.10053 1.47095 1.37086 1.20982 0.89345 0.90378 0.93049 1.22349 0.93192 0.95387 0.89777 1.86798 1.63111 1.34849 1.49737 1.22532 0.90785 0.99289 0.88876 1.86718 1.41892 1.73069 1.32932 1.22336 0.96824 0.99633 0.99041 1.20836 0.97954 0.86734 0.92303 0.93554 0.89390 0.96166 0.92868 0.92873 0.90161 0.77703 0.76573 0.87264 0.92664 0.93321 0.78609 0.93073 0.93658 0.78905 0.92690 0.91924 0.96213 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.20 55.49 0.62 -26.09 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.26 -7.08 9.58 -15.06 -0.14 -7.22 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.13 3.00 -172.31 -0.52 -15.65 16 10 C 0.17 4.36 5.30 -3.71 -0.02 4.34 16 11 C -0.15 -3.06 5.66 -26.59 -0.15 -3.21 16 12 C 0.17 3.09 2.41 -67.87 -0.16 2.93 16 13 N -0.74 -11.19 5.08 -58.62 -0.30 -11.49 16 14 C 0.70 11.25 8.49 -86.92 -0.74 10.51 16 15 O -0.60 -11.90 15.67 5.29 0.08 -11.81 16 16 N -0.74 -9.04 5.01 -58.67 -0.29 -9.34 16 17 C 0.17 1.81 2.86 -67.93 -0.19 1.62 16 18 C 0.07 0.55 6.79 37.16 0.25 0.80 16 19 O -0.54 -4.53 10.95 -58.58 -0.64 -5.17 16 20 C 0.06 0.71 6.85 37.16 0.25 0.96 16 21 O -0.54 -5.94 11.17 -58.58 -0.65 -6.59 16 22 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 23 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 24 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 30 H 0.39 4.81 8.62 -40.82 -0.35 4.46 16 31 H 0.40 4.35 8.40 -40.82 -0.34 4.01 16 32 H 0.11 1.23 7.58 -51.93 -0.39 0.83 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 35 H 0.37 1.52 9.12 45.56 0.42 1.94 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.37 2.72 9.12 45.56 0.42 3.13 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -34.96 339.92 -7.92 -42.88 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.15 Total: 9.93 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.16 Total: 11.30 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.49 Total: -62.56 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.21 Total: -23.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.96 -7.92 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322198693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.857 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds