Wall clock time and date at job start Tue Mar 31 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46498 * 109.44009 * 181.23934 * 12 11 10 14 14 C 1.34774 * 120.00360 * 84.79625 * 13 12 11 15 15 O 1.21587 * 120.00015 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.46505 * 120.00225 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47343 * 154.99832 * 17 16 14 19 19 O 1.42903 * 109.47277 * 64.99746 * 18 17 16 20 20 C 1.53005 * 109.46620 * 274.99750 * 17 16 14 21 21 O 1.42903 * 109.46805 * 294.99406 * 20 17 16 22 22 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 23 23 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 24 24 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 26 26 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 27 27 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 28 28 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 29 29 H 1.08998 * 109.34532 * 301.12811 * 12 11 10 30 30 H 0.97005 * 119.99849 * 264.79501 * 13 12 11 31 31 H 0.97005 * 119.99908 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47079 * 34.98918 * 17 16 14 33 33 H 1.08997 * 109.47148 * 185.00173 * 18 17 16 34 34 H 1.09008 * 109.46562 * 304.99604 * 18 17 16 35 35 H 0.96698 * 113.99895 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.47314 * 54.99836 * 20 17 16 37 37 H 1.09006 * 109.46944 * 174.99981 * 20 17 16 38 38 H 0.96705 * 113.99641 * 180.02562 * 21 20 17 39 39 H 1.09002 * 109.49555 * 178.74703 * 22 12 11 40 40 H 1.08992 * 109.52043 * 58.66705 * 22 12 11 41 41 H 1.08996 * 109.59017 * 246.20330 * 23 9 7 42 42 H 1.09009 * 109.58200 * 6.48305 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0396 -5.6477 2.9303 14 6 -0.0052 -6.2698 3.5115 15 8 -1.1367 -6.0450 3.1277 16 7 0.2042 -7.1404 4.5188 17 6 -0.9314 -7.8171 5.1502 18 6 -0.4601 -9.1341 5.7700 19 8 0.4551 -8.8599 6.8327 20 6 -1.5164 -6.9198 6.2428 21 8 -0.5528 -6.7471 7.2839 22 6 2.0674 -4.6174 0.9645 23 6 1.8137 -3.6528 -0.1983 24 1 -0.4850 0.8400 -0.0004 25 1 0.0993 -1.3344 1.6687 26 1 -0.6775 -2.6380 0.7360 27 1 1.3427 -2.9695 3.0019 28 1 -0.3882 -3.3843 3.0516 29 1 -0.0283 -5.0410 1.2304 30 1 1.9424 -5.8268 3.2368 31 1 1.1070 -7.3195 4.8253 32 1 -1.6955 -8.0213 4.4001 33 1 -1.3188 -9.6793 6.1615 34 1 0.0365 -9.7364 5.0091 35 1 0.7959 -9.6510 7.2722 36 1 -1.7705 -5.9487 5.8181 37 1 -2.4141 -7.3836 6.6519 38 1 -0.8566 -6.1882 8.0122 39 1 2.3041 -5.6063 0.5718 40 1 2.9027 -4.2541 1.5630 41 1 1.0401 -4.0603 -0.8491 42 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322198693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:25 Heat of formation + Delta-G solvation = -136.020146 kcal Electronic energy + Delta-G solvation = -23694.721457 eV Core-core repulsion = 20095.274009 eV Total energy + Delta-G solvation = -3599.447448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.168 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.28932 -39.40515 -38.43311 -36.80047 -35.98641 -35.20603 -33.87989 -31.90717 -31.46669 -30.21425 -26.84590 -26.61245 -24.01275 -23.86694 -22.24754 -21.51837 -21.03290 -19.50567 -18.71658 -18.46406 -17.63451 -17.59658 -16.85365 -16.37325 -16.29836 -15.77792 -15.35651 -15.25527 -15.16650 -14.80172 -14.69969 -14.34597 -14.24450 -14.01127 -13.29857 -13.19156 -13.01969 -12.94622 -12.63746 -12.55883 -12.12931 -12.07929 -11.97758 -11.86242 -11.53363 -11.45369 -11.23695 -10.84888 -10.66457 -10.57061 -10.26143 -9.71046 -8.71029 -7.86863 -5.33599 1.47740 1.50746 1.57532 1.71136 2.19161 2.52220 3.22581 3.30490 3.46627 3.49704 3.67636 3.88211 3.91750 4.10562 4.32019 4.35245 4.46771 4.48055 4.54662 4.56750 4.67274 4.73114 4.80520 4.89646 4.92164 5.05758 5.09036 5.13636 5.32280 5.45692 5.56266 5.63027 5.64300 5.69421 6.07773 6.38949 6.96347 7.08443 7.13399 7.16056 7.63899 7.84572 8.37720 9.20121 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.003286 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.644487 B = 8519.636235 C = 8822.774242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.130 4.130 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.719 5.719 17 C 0.156 3.844 18 C 0.081 3.919 19 O -0.561 6.561 20 C 0.069 3.931 21 O -0.553 6.553 22 C -0.120 4.120 23 C 0.142 3.858 24 H 0.249 0.751 25 H 0.054 0.946 26 H -0.011 1.011 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.409 0.591 31 H 0.410 0.590 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.388 0.612 36 H 0.018 0.982 37 H 0.069 0.931 38 H 0.380 0.620 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.013 0.987 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -20.821 14.262 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.058 3.942 11 C -0.170 4.170 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.520 6.520 16 N -0.374 5.374 17 C 0.051 3.949 18 C 0.003 3.997 19 O -0.368 6.368 20 C -0.011 4.011 21 O -0.358 6.358 22 C -0.160 4.160 23 C 0.016 3.984 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.007 0.993 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.246 0.754 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.236 0.764 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.031 0.969 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.608 -20.283 13.326 24.322 hybrid contribution 0.231 0.993 0.523 1.146 sum 1.839 -19.291 13.849 23.818 Atomic orbital electron populations 1.70207 1.06923 1.25946 1.55368 1.25895 0.96013 1.01847 1.01191 0.85293 0.77476 0.78913 0.78472 1.19770 1.22327 1.20284 1.19550 0.93056 0.85850 1.40977 0.90828 1.44344 1.35690 1.02743 1.50552 1.20442 0.87870 0.97184 0.88742 1.22322 0.99982 0.96227 0.98482 1.20503 0.98411 0.86852 0.86632 1.45122 1.08714 1.45946 1.38334 1.16231 0.84584 0.79350 0.80092 1.90891 1.23321 1.69514 1.68304 1.44891 1.11192 1.45722 1.35643 1.21241 0.88862 0.91897 0.92925 1.22251 0.94129 0.93315 0.90022 1.86731 1.63332 1.36696 1.50020 1.22453 0.91763 0.97835 0.89050 1.86673 1.42285 1.73514 1.33358 1.22131 0.96125 1.00427 0.97305 1.21047 0.97943 0.85530 0.93889 0.94172 0.92801 0.99256 0.92420 0.94004 0.92556 0.75520 0.75386 0.88098 0.90537 0.92079 0.76381 0.96403 0.91343 0.77277 0.88976 0.90785 0.96947 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 11.20 21.65 0.24 -57.33 16 2 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 3 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.26 -14.70 9.58 84.03 0.81 -13.90 16 8 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.61 -31.43 3.00 -699.07 -2.09 -33.52 16 10 C 0.18 9.61 5.30 86.37 0.46 10.07 16 11 C -0.13 -5.51 5.66 30.69 0.17 -5.33 16 12 C 0.18 6.48 2.41 45.03 0.11 6.59 16 13 N -0.73 -20.71 5.08 -457.64 -2.33 -23.03 16 14 C 0.70 21.77 8.49 179.06 1.52 23.29 16 15 O -0.64 -25.86 15.67 -3.99 -0.06 -25.92 16 16 N -0.72 -16.47 5.01 -457.80 -2.29 -18.77 16 17 C 0.16 3.12 2.86 44.99 0.13 3.25 16 18 C 0.08 1.01 6.79 71.98 0.49 1.50 16 19 O -0.56 -7.68 10.95 -126.65 -1.39 -9.07 16 20 C 0.07 1.43 6.85 71.98 0.49 1.92 16 21 O -0.55 -11.14 11.17 -126.65 -1.41 -12.55 16 22 C -0.12 -3.83 5.55 30.67 0.17 -3.66 16 23 C 0.14 5.82 6.52 86.36 0.56 6.38 16 24 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.05 3.15 6.06 -2.39 -0.01 3.14 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 30 H 0.41 8.79 8.62 -92.70 -0.80 7.99 16 31 H 0.41 7.85 8.40 -92.70 -0.78 7.08 16 32 H 0.10 2.20 7.58 -2.39 -0.02 2.18 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.39 1.95 9.12 -74.06 -0.68 1.27 16 36 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.38 5.07 9.12 -74.05 -0.68 4.40 16 39 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 2.66 7.93 -2.38 -0.02 2.64 16 Total: -1.00 -77.75 339.92 -3.84 -81.60 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -1.86 Total: 23.64 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 5.33 Total: 27.43 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.47 Total: -132.66 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.86 Total: -47.55 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.75 -3.84 -81.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322198693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.422 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds