Wall clock time and date at job start Tue Mar 31 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34592 * 125.74585 * 2 1 4 4 N 1.30862 * 107.62504 * 179.97438 * 3 2 1 5 5 C 1.34551 * 107.26936 * 0.02562 * 4 3 2 6 6 C 1.47876 * 126.04576 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99703 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00050 * 0.02562 * 6 5 4 9 9 S 1.65598 * 119.99678 * 180.02562 * 8 6 5 10 10 O 1.42103 * 104.27499 * 181.06859 * 9 8 6 11 11 O 1.42106 * 104.27376 * 308.92191 * 9 8 6 12 12 C 1.81397 * 104.45553 * 64.99652 * 9 8 6 13 13 C 1.52992 * 109.47350 * 180.02562 * 12 9 8 14 14 C 1.50698 * 109.47219 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00118 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00141 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46982 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47204 * 119.99830 * 18 16 14 21 21 H 1.48503 * 109.47127 * 240.00309 * 18 16 14 22 22 N 1.28845 * 125.75243 * 180.28945 * 2 1 3 23 23 H 1.09000 * 109.46805 * 90.00029 * 1 2 3 24 24 H 1.09001 * 109.46611 * 210.00274 * 1 2 3 25 25 H 1.08997 * 109.46993 * 329.99993 * 1 2 3 26 26 H 1.08003 * 126.18578 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99871 * 359.97438 * 8 6 5 28 28 H 1.09002 * 109.46869 * 300.00241 * 12 9 8 29 29 H 1.09003 * 109.47170 * 59.99540 * 12 9 8 30 30 H 1.09002 * 109.47094 * 299.99813 * 13 12 9 31 31 H 1.09003 * 109.47596 * 59.99511 * 13 12 9 32 32 H 0.96998 * 120.00007 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0924 0.0000 4 7 3.4950 0.6854 0.0006 5 6 3.4751 -0.6600 0.0003 6 6 4.6576 -1.5478 0.0002 7 8 4.5116 -2.7545 -0.0004 8 7 5.8973 -1.0190 0.0009 9 16 7.2216 -2.0133 0.0002 10 8 8.3285 -1.1226 0.0269 11 8 6.9821 -2.9166 1.0708 12 6 7.1381 -2.8774 -1.5926 13 6 8.3226 -3.8381 -1.7143 14 6 8.2529 -4.5564 -3.0372 15 1 7.4443 -4.3488 -3.7225 16 6 9.2213 -5.4786 -3.3728 17 7 10.2056 -5.7318 -2.5382 18 14 9.1345 -6.3696 -5.0124 19 1 7.9380 -5.9102 -5.7627 20 1 10.3575 -6.0746 -5.8014 21 1 9.0386 -7.8326 -4.7763 22 7 2.2179 -1.0456 -0.0053 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.9164 2.1191 -0.0004 27 1 6.0138 -0.0560 0.0011 28 1 6.2066 -3.4403 -1.6521 29 1 7.1752 -2.1496 -2.4032 30 1 9.2543 -3.2755 -1.6546 31 1 8.2850 -4.5658 -0.9037 32 1 10.8867 -6.3809 -2.7742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324610102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:18 Heat of formation + Delta-G solvation = -14.491193 kcal Electronic energy + Delta-G solvation = -20326.471670 eV Core-core repulsion = 16837.954883 eV Total energy + Delta-G solvation = -3488.516786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.83024 -39.82414 -36.66249 -35.58595 -35.11222 -34.27997 -33.85254 -32.16357 -31.14130 -28.43865 -25.60452 -24.82981 -22.84893 -21.65217 -21.31083 -19.31870 -18.77523 -17.60203 -17.20357 -16.94469 -16.48570 -15.72190 -15.66886 -15.09650 -14.83852 -14.59644 -14.48568 -13.77200 -13.65574 -13.37338 -12.52346 -12.39525 -12.29156 -11.75933 -11.68467 -11.58065 -11.06046 -10.96371 -10.87772 -10.86262 -10.81645 -10.66983 -10.33777 -10.30797 -9.96835 -9.67165 -9.13086 -8.45985 -6.08058 -4.13072 0.49379 0.96608 1.63714 1.80681 2.66337 2.94513 3.29756 3.36670 3.40776 3.53389 3.86553 4.09383 4.21732 4.41515 4.47851 4.54406 4.68150 4.79088 4.95635 5.27426 5.51636 5.64926 5.77055 5.88589 6.03943 6.50349 6.63311 7.28713 7.33831 7.40116 7.68511 7.85602 8.21367 8.90135 9.51247 11.03150 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.003923 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.935877 B = 7135.123281 C = 7881.507226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.303 5.303 3 C 0.194 3.806 4 N -0.480 5.480 5 C 0.138 3.862 6 C 0.641 3.359 7 O -0.465 6.465 8 N -1.042 6.042 9 S 2.567 3.433 10 O -0.948 6.948 11 O -0.935 6.935 12 C -0.575 4.575 13 C 0.029 3.971 14 C -0.517 4.517 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 N -0.241 5.241 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.230 0.770 27 H 0.436 0.564 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 16.994 4.273 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.099 5.099 3 C -0.101 4.101 4 N -0.205 5.205 5 C -0.143 4.143 6 C 0.422 3.578 7 O -0.331 6.331 8 N -0.803 5.803 9 S 2.667 3.333 10 O -0.938 6.938 11 O -0.925 6.925 12 C -0.710 4.710 13 C -0.010 4.010 14 C -0.557 4.557 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 N -0.081 5.081 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.246 0.754 27 H 0.273 0.727 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.928 15.471 5.063 25.731 hybrid contribution -0.616 0.355 -1.413 1.582 sum -20.544 15.825 3.650 26.188 Atomic orbital electron populations 1.22309 0.71863 1.06192 1.05259 1.47454 1.09544 1.03808 1.49113 1.26537 0.85618 0.96080 1.01898 1.71238 1.20649 1.09075 1.19563 1.23490 0.91902 0.89639 1.09224 1.16088 0.81038 0.86009 0.74616 1.91045 1.85222 1.12669 1.44192 1.55242 1.20512 1.24509 1.80073 1.06784 0.72272 0.74642 0.79614 1.93600 1.48073 1.63990 1.88158 1.93605 1.83183 1.64124 1.51594 1.30355 1.11772 1.12428 1.16477 1.19011 0.89043 0.92865 1.00126 1.21025 1.10377 1.22776 1.01540 0.91877 1.25064 0.95197 0.96709 0.97533 1.69963 1.12949 1.34102 1.35843 0.86391 0.78024 0.79485 0.83247 1.19635 1.20823 1.20783 1.74386 1.02652 1.13320 1.17781 0.88872 0.87947 0.87792 0.75374 0.72707 0.84964 0.85809 0.94628 0.94452 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.38 59.85 0.68 0.85 16 2 N -0.30 -2.34 3.72 -69.39 -0.26 -2.59 16 3 C 0.19 1.33 12.62 -90.48 -1.14 0.19 16 4 N -0.48 -5.38 11.09 -12.36 -0.14 -5.52 16 5 C 0.14 1.95 7.96 -156.35 -1.24 0.70 16 6 C 0.64 10.62 7.57 -12.32 -0.09 10.52 16 7 O -0.47 -9.20 15.18 -11.82 -0.18 -9.38 16 8 N -1.04 -15.88 5.60 30.54 0.17 -15.71 16 9 S 2.57 49.56 5.11 -107.50 -0.55 49.01 16 10 O -0.95 -19.53 18.08 -57.54 -1.04 -20.57 16 11 O -0.93 -21.30 17.04 -64.79 -1.10 -22.40 16 12 C -0.58 -11.91 5.82 37.15 0.22 -11.69 16 13 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 N -0.24 -3.10 12.08 32.08 0.39 -2.72 16 23 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 24 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 26 H 0.23 0.26 8.06 -52.48 -0.42 -0.17 16 27 H 0.44 5.27 8.50 -34.47 -0.29 4.98 16 28 H 0.13 2.69 7.19 -51.92 -0.37 2.32 16 29 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -40.54 305.59 -7.69 -48.23 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.17 Total: -1.16 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.13 Total: -12.28 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.90 Total: -52.71 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.32 Total: -52.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.55 Total: 49.01 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -40.54 -7.69 -48.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324610102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.736 kcal (2) G-P(sol) polarization free energy of solvation -40.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds