Wall clock time and date at job start Tue Mar 31 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34592 * 125.74585 * 2 1 4 4 N 1.30862 * 107.62504 * 179.97438 * 3 2 1 5 5 C 1.34551 * 107.26936 * 0.02562 * 4 3 2 6 6 C 1.47876 * 126.04576 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99703 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00050 * 0.02562 * 6 5 4 9 9 S 1.65598 * 119.99678 * 180.02562 * 8 6 5 10 10 O 1.42103 * 104.27499 * 181.06859 * 9 8 6 11 11 O 1.42106 * 104.27376 * 308.92191 * 9 8 6 12 12 C 1.81397 * 104.45553 * 64.99652 * 9 8 6 13 13 C 1.52992 * 109.47350 * 180.02562 * 12 9 8 14 14 C 1.50698 * 109.47219 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00118 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00141 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46982 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47204 * 119.99830 * 18 16 14 21 21 H 1.48503 * 109.47127 * 240.00309 * 18 16 14 22 22 N 1.28845 * 125.75243 * 180.28945 * 2 1 3 23 23 H 1.09000 * 109.46805 * 90.00029 * 1 2 3 24 24 H 1.09001 * 109.46611 * 210.00274 * 1 2 3 25 25 H 1.08997 * 109.46993 * 329.99993 * 1 2 3 26 26 H 1.08003 * 126.18578 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99871 * 359.97438 * 8 6 5 28 28 H 1.09002 * 109.46869 * 300.00241 * 12 9 8 29 29 H 1.09003 * 109.47170 * 59.99540 * 12 9 8 30 30 H 1.09002 * 109.47094 * 299.99813 * 13 12 9 31 31 H 1.09003 * 109.47596 * 59.99511 * 13 12 9 32 32 H 0.96998 * 120.00007 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0924 0.0000 4 7 3.4950 0.6854 0.0006 5 6 3.4751 -0.6600 0.0003 6 6 4.6576 -1.5478 0.0002 7 8 4.5116 -2.7545 -0.0004 8 7 5.8973 -1.0190 0.0009 9 16 7.2216 -2.0133 0.0002 10 8 8.3285 -1.1226 0.0269 11 8 6.9821 -2.9166 1.0708 12 6 7.1381 -2.8774 -1.5926 13 6 8.3226 -3.8381 -1.7143 14 6 8.2529 -4.5564 -3.0372 15 1 7.4443 -4.3488 -3.7225 16 6 9.2213 -5.4786 -3.3728 17 7 10.2056 -5.7318 -2.5382 18 14 9.1345 -6.3696 -5.0124 19 1 7.9380 -5.9102 -5.7627 20 1 10.3575 -6.0746 -5.8014 21 1 9.0386 -7.8326 -4.7763 22 7 2.2179 -1.0456 -0.0053 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.9164 2.1191 -0.0004 27 1 6.0138 -0.0560 0.0011 28 1 6.2066 -3.4403 -1.6521 29 1 7.1752 -2.1496 -2.4032 30 1 9.2543 -3.2755 -1.6546 31 1 8.2850 -4.5658 -0.9037 32 1 10.8867 -6.3809 -2.7742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324610102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:17 Heat of formation + Delta-G solvation = -47.289489 kcal Electronic energy + Delta-G solvation = -20327.893910 eV Core-core repulsion = 16837.954883 eV Total energy + Delta-G solvation = -3489.939027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -44.55674 -41.14992 -38.35213 -37.29800 -36.09391 -35.90638 -35.29182 -33.19653 -32.90266 -29.00159 -27.66079 -25.76251 -23.74627 -23.43008 -22.34270 -20.78395 -19.87498 -19.23380 -18.41595 -17.94721 -17.73086 -17.31105 -16.72961 -16.61109 -16.45599 -16.19011 -15.54812 -15.22714 -14.50491 -14.04936 -14.00552 -13.91837 -13.77278 -13.42923 -13.31941 -12.97176 -12.91157 -12.85584 -12.38667 -12.29589 -12.09827 -12.00416 -11.73515 -11.64340 -11.52256 -11.11088 -10.67321 -10.65641 -8.26895 -6.40788 -1.11198 -0.05126 0.93789 1.06229 1.40590 1.42079 1.54634 1.55679 1.87430 2.36569 2.46997 2.61428 3.03287 3.06772 3.26806 3.64217 3.83060 3.96720 4.00690 4.33885 4.43131 4.67189 4.68967 4.73641 5.20986 5.22276 5.23748 5.42752 5.62009 5.67047 6.03614 6.10802 6.71536 6.90095 7.28881 8.85830 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.003923 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.935877 B = 7135.123281 C = 7881.507226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.294 5.294 3 C 0.215 3.785 4 N -0.503 5.503 5 C 0.108 3.892 6 C 0.641 3.359 7 O -0.507 6.507 8 N -1.023 6.023 9 S 2.602 3.398 10 O -0.960 6.960 11 O -0.972 6.972 12 C -0.576 4.576 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.073 0.927 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.977 3.023 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.278 1.278 22 N -0.270 5.270 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.148 0.852 26 H 0.289 0.711 27 H 0.452 0.548 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.019 0.981 31 H 0.008 0.992 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.204 19.249 3.099 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.090 5.090 3 C -0.079 4.079 4 N -0.229 5.229 5 C -0.171 4.171 6 C 0.425 3.575 7 O -0.376 6.376 8 N -0.788 5.788 9 S 2.701 3.299 10 O -0.950 6.950 11 O -0.962 6.962 12 C -0.710 4.710 13 C -0.017 4.017 14 C -0.580 4.580 15 H 0.091 0.909 16 C -0.201 4.201 17 N -0.571 5.571 18 Si 0.800 3.200 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.204 1.204 22 N -0.113 5.113 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.166 0.834 26 H 0.304 0.696 27 H 0.292 0.708 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.038 0.962 31 H 0.027 0.973 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.473 17.766 3.881 28.909 hybrid contribution -0.018 -0.196 -0.991 1.011 sum -22.491 17.570 2.890 28.686 Atomic orbital electron populations 1.22853 0.68614 1.08165 1.06971 1.47910 1.11139 1.02889 1.47107 1.27633 0.84059 0.97758 0.98424 1.71181 1.23391 1.07506 1.20862 1.22891 0.91254 0.90497 1.12452 1.16475 0.81820 0.85947 0.73302 1.91013 1.85767 1.14590 1.46233 1.54674 1.19431 1.24961 1.79766 1.05479 0.72251 0.74015 0.78174 1.93575 1.49342 1.64083 1.88006 1.93556 1.84039 1.65762 1.52832 1.30240 1.09309 1.12375 1.19068 1.18863 0.90748 0.93296 0.98788 1.21495 1.10775 1.23242 1.02451 0.90854 1.26112 0.94658 0.97586 1.01754 1.70097 1.13880 1.34969 1.38170 0.85228 0.78685 0.77910 0.78181 1.18213 1.19886 1.20367 1.74291 1.02759 1.15974 1.18324 0.87223 0.88515 0.83363 0.69594 0.70762 0.84702 0.82805 0.96237 0.97349 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.02 11.38 127.77 1.45 1.48 16 2 N -0.29 -3.66 3.72 -373.45 -1.39 -5.04 16 3 C 0.22 2.09 12.62 180.30 2.27 4.37 16 4 N -0.50 -10.19 11.09 -193.02 -2.14 -12.33 16 5 C 0.11 2.98 7.96 137.13 1.09 4.07 16 6 C 0.64 21.49 7.57 86.80 0.66 22.15 16 7 O -0.51 -20.77 15.18 12.51 0.19 -20.58 16 8 N -1.02 -31.19 5.60 -175.58 -0.98 -32.17 16 9 S 2.60 102.63 5.11 -56.49 -0.29 102.34 16 10 O -0.96 -39.81 18.08 -127.65 -2.31 -42.12 16 11 O -0.97 -45.95 17.04 -120.72 -2.06 -48.01 16 12 C -0.58 -24.31 5.82 71.98 0.42 -23.89 16 13 C 0.02 1.22 4.98 29.84 0.15 1.36 16 14 C -0.54 -31.25 9.11 25.60 0.23 -31.01 16 15 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 18 Si 0.98 44.60 29.54 68.60 2.03 46.63 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 N -0.27 -6.68 12.08 -52.43 -0.63 -7.32 16 23 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.15 -1.23 8.14 -2.39 -0.02 -1.25 16 26 H 0.29 -1.17 8.06 -2.91 -0.02 -1.19 16 27 H 0.45 10.61 8.50 -96.75 -0.82 9.79 16 28 H 0.13 5.64 7.19 -2.39 -0.02 5.62 16 29 H 0.15 5.43 8.14 -2.39 -0.02 5.41 16 30 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -92.00 305.59 -0.21 -92.21 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 0.35 Total: 5.00 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 6.74 Total: -21.17 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.86 Total: -114.30 kcal Atomic # 8 Polarization: -106.54 SS G_CDS: -4.17 Total: -110.71 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 102.63 SS G_CDS: -0.29 Total: 102.34 kcal Total: -92.00 -0.21 -92.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324610102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.919 kcal (2) G-P(sol) polarization free energy of solvation -91.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds