Wall clock time and date at job start Tue Mar 31 2020 03:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00216 * 2 1 4 4 H 1.48502 * 109.47008 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47388 * 119.99479 * 3 2 1 7 7 C 1.37880 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00079 * 174.71547 * 7 2 1 9 9 C 1.50706 * 120.00010 * 354.71638 * 7 2 1 10 10 C 1.53005 * 115.54803 * 296.44625 * 9 7 2 11 11 N 1.46497 * 109.46549 * 272.52102 * 10 9 7 12 12 C 1.34787 * 119.99530 * 185.01922 * 11 10 9 13 13 O 1.21274 * 119.99873 * 5.02785 * 12 11 10 14 14 C 1.50701 * 119.99587 * 185.03075 * 12 11 10 15 15 S 1.81396 * 115.55300 * 312.99154 * 14 12 11 16 16 N 1.65599 * 104.44768 * 299.20392 * 15 14 12 17 17 O 1.42098 * 110.54478 * 50.82345 * 15 14 12 18 18 O 1.42098 * 110.54257 * 187.57982 * 15 14 12 19 19 C 1.53007 * 117.49546 * 167.32223 * 14 12 11 20 20 C 1.53003 * 117.49660 * 98.66726 * 14 12 11 21 21 C 1.52996 * 117.51645 * 82.14478 * 9 7 2 22 22 C 1.52997 * 117.49969 * 150.77416 * 9 7 2 23 23 H 0.97000 * 119.99882 * 5.02149 * 1 2 3 24 24 H 1.09000 * 109.47310 * 32.52135 * 10 9 7 25 25 H 1.08999 * 109.46897 * 152.52465 * 10 9 7 26 26 H 0.96995 * 120.00894 * 5.01359 * 11 10 9 27 27 H 0.96999 * 120.00213 * 4.62438 * 16 15 14 28 28 H 0.97006 * 120.00183 * 184.62455 * 16 15 14 29 29 H 1.09003 * 117.49606 * 0.02562 * 19 14 12 30 30 H 1.08996 * 117.49597 * 145.01868 * 19 14 12 31 31 H 1.09002 * 117.49499 * 214.97527 * 20 14 12 32 32 H 1.08993 * 117.50063 * 359.96542 * 20 14 12 33 33 H 1.09006 * 117.49509 * 214.96985 * 21 9 7 34 34 H 1.09000 * 117.50421 * 359.97438 * 21 9 7 35 35 H 1.09002 * 117.49912 * 359.97438 * 22 9 7 36 36 H 1.08994 * 117.50108 * 144.97368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0811 -1.1962 -0.0856 9 6 1.2558 -2.4964 0.1213 10 6 0.4953 -2.7011 1.4331 11 7 1.3883 -3.3026 2.4264 12 6 0.9071 -3.6687 3.6311 13 8 -0.2808 -3.5849 3.8605 14 6 1.8454 -4.1819 4.6929 15 16 3.0373 -5.4346 4.1447 16 7 2.1001 -6.6931 3.6156 17 8 3.7230 -4.9947 2.9803 18 8 3.7461 -5.9680 5.2547 19 6 1.3024 -4.2995 6.1185 20 6 2.3025 -3.1947 5.7687 21 6 0.6372 -3.0768 -1.1520 22 6 1.8755 -3.7312 -0.5361 23 1 -0.4850 0.8368 -0.0735 24 1 0.1388 -1.7387 1.8004 25 1 -0.3545 -3.3617 1.2611 26 1 2.3258 -3.4376 2.2173 27 1 1.1347 -6.6019 3.5907 28 1 2.5165 -7.5216 3.3305 29 1 0.2664 -4.0060 6.2882 30 1 1.6617 -5.1293 6.7270 31 1 3.3194 -3.2982 6.1473 32 1 1.9251 -2.1740 5.7082 33 1 -0.3117 -3.6045 -1.0551 34 1 0.7712 -2.5165 -2.0773 35 1 2.8245 -3.6015 -1.0564 36 1 1.7417 -4.6893 -0.0340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326474866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:19 Heat of formation + Delta-G solvation = -58.043797 kcal Electronic energy + Delta-G solvation = -21748.391899 eV Core-core repulsion = 18361.526874 eV Total energy + Delta-G solvation = -3386.865026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.76552 -37.50502 -36.92105 -36.13198 -36.04916 -33.41406 -33.26056 -32.07519 -27.15022 -25.53424 -23.86235 -22.88608 -21.33348 -20.59874 -19.53417 -19.22636 -18.20706 -17.54307 -16.75364 -16.25523 -15.85319 -15.53621 -15.20991 -14.73664 -14.47762 -14.20391 -13.87223 -13.37025 -12.73393 -12.35348 -12.26182 -12.13653 -11.97595 -11.83677 -11.79176 -11.65191 -11.22142 -11.00712 -10.93371 -10.73694 -10.55342 -10.54321 -10.30835 -9.81693 -9.48978 -9.06799 -8.63174 -8.34199 -8.21973 -6.10674 -4.17097 0.03192 2.30238 2.89810 3.09385 3.26635 3.32125 3.34511 3.41378 3.50956 3.98800 4.34296 4.37748 4.63276 4.80748 5.09868 5.22515 5.29988 5.40740 5.54368 5.77496 5.85931 5.98251 6.30193 6.41497 6.55949 6.68514 6.80053 6.92214 7.03139 7.11365 7.37431 7.45715 7.82443 8.03916 8.33203 8.53877 8.83915 9.47776 10.97167 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.005523 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.367151 B = 5068.098224 C = 5373.450335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.071 3.929 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.160 3.840 11 N -0.701 5.701 12 C 0.551 3.449 13 O -0.534 6.534 14 C -0.689 4.689 15 S 2.652 3.348 16 N -1.246 6.246 17 O -0.943 6.943 18 O -0.959 6.959 19 C -0.094 4.094 20 C -0.098 4.098 21 C -0.168 4.168 22 C -0.203 4.203 23 H 0.263 0.737 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.410 0.590 27 H 0.417 0.583 28 H 0.420 0.580 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.112 -10.406 10.174 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.031 3.969 10 C 0.039 3.961 11 N -0.352 5.352 12 C 0.332 3.668 13 O -0.412 6.412 14 C -0.780 4.780 15 S 2.740 3.260 16 N -0.921 5.921 17 O -0.932 6.932 18 O -0.948 6.948 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.206 4.206 22 C -0.241 4.241 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.247 0.753 27 H 0.244 0.756 28 H 0.250 0.750 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.172 -9.967 10.422 14.766 hybrid contribution -0.057 0.771 -0.444 0.892 sum 3.115 -9.196 9.978 13.923 Atomic orbital electron populations 1.69942 1.05871 1.27185 1.48454 1.24999 0.94858 0.99034 0.94413 0.86649 0.79626 0.82928 0.78781 1.20165 1.21237 1.20115 1.20472 0.92927 0.88585 1.51542 0.91915 1.19053 0.97408 0.91896 0.88533 1.21190 0.90162 0.97360 0.87426 1.46449 1.15156 1.60120 1.13507 1.18281 0.87230 0.79409 0.81847 1.90670 1.15362 1.55188 1.79943 1.32077 1.21408 1.22632 1.01903 1.03674 0.73234 0.74290 0.74814 1.52973 1.20875 1.32192 1.86015 1.93633 1.69985 1.81737 1.47846 1.93595 1.69342 1.76248 1.55604 1.22979 1.02057 1.01241 0.86960 1.22963 1.01276 0.96742 0.92691 1.22763 0.94257 1.03740 0.99838 1.22881 0.97406 0.96887 1.06898 0.92687 0.89433 0.93565 0.75303 0.75644 0.74954 0.85603 0.86079 0.86313 0.85945 0.91619 0.89940 0.90134 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.25 12.37 55.43 0.69 -23.57 16 2 C 0.07 1.88 5.23 -17.82 -0.09 1.79 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.50 -13.15 8.84 -34.44 -0.30 -13.46 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.03 0.76 1.40 -155.66 -0.22 0.55 16 10 C 0.16 3.69 5.51 -4.04 -0.02 3.67 16 11 N -0.70 -13.76 5.38 -60.29 -0.32 -14.09 16 12 C 0.55 9.69 7.28 -10.98 -0.08 9.61 16 13 O -0.53 -10.83 16.32 5.56 0.09 -10.74 16 14 C -0.69 -9.01 2.55 -91.77 -0.23 -9.24 16 15 S 2.65 33.67 5.88 -107.50 -0.63 33.04 16 16 N -1.25 -12.23 9.43 60.35 0.57 -11.66 16 17 O -0.94 -15.19 16.16 -57.54 -0.93 -16.12 16 18 O -0.96 -13.36 17.83 -57.54 -1.03 -14.39 16 19 C -0.09 -0.96 9.69 -26.69 -0.26 -1.22 16 20 C -0.10 -1.05 10.00 -26.69 -0.27 -1.32 16 21 C -0.17 -3.78 9.88 -26.73 -0.26 -4.05 16 22 C -0.20 -4.31 9.64 -26.73 -0.26 -4.57 16 23 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 24 H 0.09 2.28 7.05 -51.93 -0.37 1.92 16 25 H 0.05 1.05 7.85 -51.93 -0.41 0.64 16 26 H 0.41 7.90 6.23 -40.82 -0.25 7.64 16 27 H 0.42 3.66 8.84 -34.47 -0.30 3.36 16 28 H 0.42 3.26 8.96 -34.47 -0.31 2.95 16 29 H 0.13 1.33 7.73 -51.93 -0.40 0.93 16 30 H 0.12 0.95 8.03 -51.93 -0.42 0.53 16 31 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -33.05 323.81 -8.24 -41.29 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.54 Total: 13.90 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.00 Total: -18.22 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.93 Total: -49.32 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.87 Total: -41.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 33.67 SS G_CDS: -0.63 Total: 33.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.05 -8.24 -41.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326474866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.753 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds