Wall clock time and date at job start Tue Mar 31 2020 03:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00216 * 2 1 4 4 H 1.48502 * 109.47008 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47388 * 119.99479 * 3 2 1 7 7 C 1.37880 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00079 * 174.71547 * 7 2 1 9 9 C 1.50706 * 120.00010 * 354.71638 * 7 2 1 10 10 C 1.53005 * 115.54803 * 296.44625 * 9 7 2 11 11 N 1.46497 * 109.46549 * 272.52102 * 10 9 7 12 12 C 1.34787 * 119.99530 * 185.01922 * 11 10 9 13 13 O 1.21274 * 119.99873 * 5.02785 * 12 11 10 14 14 C 1.50701 * 119.99587 * 185.03075 * 12 11 10 15 15 S 1.81396 * 115.55300 * 312.99154 * 14 12 11 16 16 N 1.65599 * 104.44768 * 299.20392 * 15 14 12 17 17 O 1.42098 * 110.54478 * 50.82345 * 15 14 12 18 18 O 1.42098 * 110.54257 * 187.57982 * 15 14 12 19 19 C 1.53007 * 117.49546 * 167.32223 * 14 12 11 20 20 C 1.53003 * 117.49660 * 98.66726 * 14 12 11 21 21 C 1.52996 * 117.51645 * 82.14478 * 9 7 2 22 22 C 1.52997 * 117.49969 * 150.77416 * 9 7 2 23 23 H 0.97000 * 119.99882 * 5.02149 * 1 2 3 24 24 H 1.09000 * 109.47310 * 32.52135 * 10 9 7 25 25 H 1.08999 * 109.46897 * 152.52465 * 10 9 7 26 26 H 0.96995 * 120.00894 * 5.01359 * 11 10 9 27 27 H 0.96999 * 120.00213 * 4.62438 * 16 15 14 28 28 H 0.97006 * 120.00183 * 184.62455 * 16 15 14 29 29 H 1.09003 * 117.49606 * 0.02562 * 19 14 12 30 30 H 1.08996 * 117.49597 * 145.01868 * 19 14 12 31 31 H 1.09002 * 117.49499 * 214.97527 * 20 14 12 32 32 H 1.08993 * 117.50063 * 359.96542 * 20 14 12 33 33 H 1.09006 * 117.49509 * 214.96985 * 21 9 7 34 34 H 1.09000 * 117.50421 * 359.97438 * 21 9 7 35 35 H 1.09002 * 117.49912 * 359.97438 * 22 9 7 36 36 H 1.08994 * 117.50108 * 144.97368 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0811 -1.1962 -0.0856 9 6 1.2558 -2.4964 0.1213 10 6 0.4953 -2.7011 1.4331 11 7 1.3883 -3.3026 2.4264 12 6 0.9071 -3.6687 3.6311 13 8 -0.2808 -3.5849 3.8605 14 6 1.8454 -4.1819 4.6929 15 16 3.0373 -5.4346 4.1447 16 7 2.1001 -6.6931 3.6156 17 8 3.7230 -4.9947 2.9803 18 8 3.7461 -5.9680 5.2547 19 6 1.3024 -4.2995 6.1185 20 6 2.3025 -3.1947 5.7687 21 6 0.6372 -3.0768 -1.1520 22 6 1.8755 -3.7312 -0.5361 23 1 -0.4850 0.8368 -0.0735 24 1 0.1388 -1.7387 1.8004 25 1 -0.3545 -3.3617 1.2611 26 1 2.3258 -3.4376 2.2173 27 1 1.1347 -6.6019 3.5907 28 1 2.5165 -7.5216 3.3305 29 1 0.2664 -4.0060 6.2882 30 1 1.6617 -5.1293 6.7270 31 1 3.3194 -3.2982 6.1473 32 1 1.9251 -2.1740 5.7082 33 1 -0.3117 -3.6045 -1.0551 34 1 0.7712 -2.5165 -2.0773 35 1 2.8245 -3.6015 -1.0564 36 1 1.7417 -4.6893 -0.0340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326474866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:18 Heat of formation + Delta-G solvation = -84.612089 kcal Electronic energy + Delta-G solvation = -21749.543987 eV Core-core repulsion = 18361.526874 eV Total energy + Delta-G solvation = -3388.017113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15146 -38.83298 -38.33682 -37.29992 -37.17668 -35.02585 -34.12003 -34.08233 -28.76880 -27.46339 -25.19738 -23.71844 -23.04952 -21.93391 -21.22339 -20.43901 -19.50060 -18.48785 -18.20064 -17.57256 -17.12144 -16.81103 -16.60485 -16.47509 -16.02323 -15.63895 -15.29180 -14.75394 -14.45626 -13.66533 -13.48099 -13.40821 -13.32359 -13.24526 -13.04763 -12.96308 -12.80429 -12.65797 -12.40209 -12.27372 -12.07566 -11.72009 -11.47610 -11.39867 -11.11407 -10.96361 -10.55795 -10.09920 -10.01760 -8.13481 -6.25166 -0.97858 1.19494 1.41745 1.42957 1.50152 1.70712 2.02114 2.23138 2.40757 2.47685 2.94865 3.10555 3.39953 3.51073 3.63311 3.78545 4.18623 4.33981 4.47284 4.50727 4.60399 4.72632 4.75238 4.95757 4.97820 5.01219 5.14239 5.22654 5.43746 5.55055 5.60055 5.78746 6.23434 6.35108 6.50696 6.79180 7.07218 7.42292 8.93674 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.005523 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.367151 B = 5068.098224 C = 5373.450335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.005 3.995 10 C 0.176 3.824 11 N -0.706 5.706 12 C 0.554 3.446 13 O -0.563 6.563 14 C -0.702 4.702 15 S 2.674 3.326 16 N -1.236 6.236 17 O -0.979 6.979 18 O -0.967 6.967 19 C -0.076 4.076 20 C -0.097 4.097 21 C -0.171 4.171 22 C -0.178 4.178 23 H 0.262 0.738 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.412 0.588 27 H 0.423 0.577 28 H 0.431 0.569 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -11.371 11.416 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.053 3.947 11 N -0.357 5.357 12 C 0.339 3.661 13 O -0.443 6.443 14 C -0.793 4.793 15 S 2.762 3.238 16 N -0.915 5.915 17 O -0.968 6.968 18 O -0.956 6.956 19 C -0.114 4.114 20 C -0.136 4.136 21 C -0.209 4.209 22 C -0.215 4.215 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.250 0.750 27 H 0.252 0.748 28 H 0.264 0.736 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.191 -10.958 11.670 16.547 hybrid contribution -0.398 1.032 -0.792 1.361 sum 3.793 -9.925 10.877 15.206 Atomic orbital electron populations 1.70053 1.07062 1.27660 1.49505 1.25665 0.95547 1.01939 0.94248 0.85751 0.78495 0.79355 0.78914 1.19612 1.21124 1.19663 1.20749 0.92904 0.90029 1.51252 0.92468 1.19099 0.98769 0.92370 0.89376 1.20702 0.90529 0.95644 0.87814 1.46359 1.14770 1.60597 1.13990 1.18800 0.87473 0.78133 0.81741 1.90654 1.17004 1.56236 1.80392 1.31925 1.21541 1.24212 1.01626 1.02859 0.72845 0.74038 0.74039 1.52724 1.21102 1.31959 1.85730 1.93592 1.71378 1.82458 1.49370 1.93585 1.69921 1.76272 1.55832 1.23230 1.01937 1.01788 0.84445 1.23282 1.03131 0.96449 0.90736 1.22731 0.95567 1.03926 0.98673 1.22885 0.96776 0.96598 1.05259 0.92907 0.93206 0.93883 0.75006 0.74843 0.73638 0.86024 0.82984 0.83453 0.86494 0.90502 0.91240 0.89837 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.99 12.37 21.45 0.27 -50.72 16 2 C 0.03 1.44 5.23 84.65 0.44 1.89 16 3 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.51 -27.28 8.84 25.60 0.23 -27.06 16 8 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 9 C 0.00 0.22 1.40 -52.93 -0.07 0.15 16 10 C 0.18 8.25 5.51 86.38 0.48 8.73 16 11 N -0.71 -27.64 5.38 -463.05 -2.49 -30.13 16 12 C 0.55 19.21 7.28 87.66 0.64 19.85 16 13 O -0.56 -22.82 16.32 -3.01 -0.05 -22.87 16 14 C -0.70 -17.09 2.55 -11.54 -0.03 -17.12 16 15 S 2.67 62.48 5.88 -56.49 -0.33 62.15 16 16 N -1.24 -21.60 9.43 37.02 0.35 -21.26 16 17 O -0.98 -30.25 16.16 -127.65 -2.06 -32.31 16 18 O -0.97 -24.28 17.83 -127.65 -2.28 -26.56 16 19 C -0.08 -1.34 9.69 30.62 0.30 -1.04 16 20 C -0.10 -1.86 10.00 30.62 0.31 -1.55 16 21 C -0.17 -7.68 9.88 30.59 0.30 -7.37 16 22 C -0.18 -7.36 9.64 30.59 0.29 -7.06 16 23 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 24 H 0.05 2.69 7.05 -2.39 -0.02 2.67 16 25 H 0.04 1.99 7.85 -2.39 -0.02 1.97 16 26 H 0.41 15.75 6.23 -92.71 -0.58 15.17 16 27 H 0.42 6.56 8.84 -96.75 -0.85 5.70 16 28 H 0.43 5.71 8.96 -96.74 -0.87 4.84 16 29 H 0.12 2.31 7.73 -2.39 -0.02 2.29 16 30 H 0.15 1.75 8.03 -2.39 -0.02 1.74 16 31 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 3.23 8.04 -2.38 -0.02 3.21 16 34 H 0.07 3.26 8.14 -2.39 -0.02 3.25 16 35 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -70.83 323.81 -2.85 -73.68 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -1.16 Total: 33.90 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.88 Total: -30.59 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -1.87 Total: -102.11 kcal Atomic # 8 Polarization: -77.35 SS G_CDS: -4.39 Total: -81.74 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 62.48 SS G_CDS: -0.33 Total: 62.15 kcal Total: -70.83 -2.85 -73.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326474866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.928 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds