Wall clock time and date at job start Tue Mar 31 2020 02:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42909 * 113.99600 * 2 1 4 4 C 1.52997 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46988 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.47237 * 179.97438 * 5 4 3 7 7 C 1.42898 * 113.99875 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46870 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47160 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99855 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00197 * 180.02562 * 9 8 7 12 12 C 1.47581 * 134.49354 * 180.02562 * 11 9 8 13 13 C 1.53945 * 86.11895 * 155.35947 * 12 11 9 14 14 O 1.42904 * 113.73986 * 269.15696 * 13 12 11 15 15 C 1.50694 * 113.74220 * 137.95139 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 11 9 8 24 24 H 1.08990 * 109.47730 * 60.00206 * 1 2 3 25 25 H 1.09005 * 109.46370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47248 * 299.99559 * 1 2 3 27 27 H 1.09004 * 109.46884 * 60.00076 * 3 2 1 28 28 H 1.08996 * 109.47110 * 300.00116 * 3 2 1 29 29 H 1.09004 * 109.47425 * 60.00223 * 4 3 2 30 30 H 1.08996 * 109.47168 * 299.99896 * 4 3 2 31 31 H 1.08998 * 109.47190 * 59.99996 * 5 4 3 32 32 H 1.08996 * 109.47195 * 300.00019 * 5 4 3 33 33 H 1.09008 * 109.46984 * 60.00557 * 7 6 5 34 34 H 1.09001 * 109.47358 * 300.00052 * 7 6 5 35 35 H 1.08994 * 109.46740 * 60.00283 * 8 7 6 36 36 H 1.09001 * 109.47279 * 300.00231 * 8 7 6 37 37 H 1.09001 * 113.77016 * 41.05438 * 12 11 9 38 38 H 1.09005 * 113.86980 * 269.67513 * 12 11 9 39 39 H 0.96699 * 113.99284 * 178.07513 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09002 * 113.76615 * 90.34214 * 23 11 9 42 42 H 1.08991 * 113.77327 * 318.94082 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5826 -0.0013 6 8 5.5822 2.4699 -0.0013 7 6 6.2645 3.7254 -0.0025 8 6 7.7755 3.4846 -0.0017 9 6 8.4952 4.8086 -0.0023 10 8 7.8619 5.8430 -0.0028 11 7 9.8425 4.8434 -0.0023 12 6 10.8493 5.9224 -0.0023 13 6 11.7989 4.8938 0.6380 14 8 11.7691 4.8947 2.0668 15 6 13.1981 4.9298 0.0795 16 1 13.4514 5.6355 -0.6978 17 6 14.1551 4.0617 0.5610 18 7 13.8470 3.2027 1.5079 19 14 15.8893 4.1060 -0.1318 20 1 15.9848 3.1774 -1.2868 21 1 16.2091 5.4858 -0.5781 22 1 16.8528 3.6898 0.9188 23 6 10.9035 3.8175 -0.0014 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.8567 0.6441 -0.8909 30 1 3.8574 0.6438 0.8891 31 1 3.8363 3.1237 0.8887 32 1 3.8355 3.1232 -0.8912 33 1 5.9867 4.2908 0.8872 34 1 5.9865 4.2892 -0.8929 35 1 8.0537 2.9191 -0.8910 36 1 8.0532 2.9210 0.8890 37 1 10.5990 6.7568 0.6528 38 1 11.1543 6.2410 -0.9991 39 1 12.3423 4.2299 2.4724 40 1 14.5201 2.5918 1.8463 41 1 11.2234 3.5156 -0.9987 42 1 10.6966 2.9720 0.6545 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328479124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:24 Heat of formation + Delta-G solvation = -173.639994 kcal Electronic energy + Delta-G solvation = -22249.143594 eV Core-core repulsion = 18615.772075 eV Total energy + Delta-G solvation = -3633.371518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24733 -39.57929 -39.06064 -38.51033 -35.81968 -34.21356 -34.12179 -32.40652 -30.19665 -27.98897 -27.23799 -27.00390 -25.71458 -24.21330 -22.62274 -21.66570 -19.90680 -19.26032 -18.33113 -17.70973 -17.61495 -17.21911 -17.00869 -16.92014 -16.46902 -16.26885 -15.93170 -15.62124 -15.24497 -15.17048 -14.71439 -14.35124 -14.03630 -13.79966 -13.48340 -13.38968 -12.89447 -12.86023 -12.74082 -12.64393 -12.63231 -12.30007 -12.23954 -12.19149 -11.95508 -11.92946 -11.40502 -10.98348 -10.65830 -10.64317 -10.63549 -10.25179 -9.59305 -8.26024 -6.42713 1.47385 1.50976 1.57341 1.60249 1.77529 2.38678 2.43584 2.96411 3.09032 3.56827 3.77539 3.90457 3.96447 3.98960 4.10349 4.18943 4.27288 4.39052 4.39993 4.43696 4.47833 4.53730 4.55369 4.58816 4.60191 4.72559 4.76783 4.82198 4.85769 4.91968 4.96109 5.07509 5.11745 5.25121 5.73916 5.93536 6.11114 6.22013 6.62801 6.81724 7.07891 7.30898 7.47587 8.79966 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.033881 B = 0.002322 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.234447 B =12057.098709 C =12524.896522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.065 3.935 4 C -0.115 4.115 5 C 0.063 3.937 6 O -0.402 6.402 7 C 0.090 3.910 8 C -0.124 4.124 9 C 0.529 3.471 10 O -0.597 6.597 11 N -0.634 5.634 12 C 0.111 3.889 13 C 0.216 3.784 14 O -0.588 6.588 15 C -0.555 4.555 16 H 0.073 0.927 17 C 0.032 3.968 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.284 1.284 23 C 0.091 3.909 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.388 0.612 40 H 0.276 0.724 41 H 0.096 0.904 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.650 -5.550 -4.078 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.011 4.011 4 C -0.152 4.152 5 C -0.014 4.014 6 O -0.322 6.322 7 C 0.013 3.987 8 C -0.164 4.164 9 C 0.320 3.680 10 O -0.480 6.480 11 N -0.367 5.367 12 C -0.011 4.011 13 C 0.175 3.825 14 O -0.400 6.400 15 C -0.593 4.593 16 H 0.091 0.909 17 C -0.168 4.168 18 N -0.557 5.557 19 Si 0.794 3.206 20 H -0.197 1.197 21 H -0.196 1.196 22 H -0.210 1.210 23 C -0.032 4.032 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.332 -5.038 -4.050 20.384 hybrid contribution 1.068 -0.010 0.004 1.068 sum -18.264 -5.048 -4.046 19.376 Atomic orbital electron populations 1.22940 0.79210 1.03891 1.01031 1.87830 1.21723 1.28721 1.95667 1.22396 0.92431 0.84628 1.01656 1.21314 0.93670 0.96303 1.03938 1.22448 0.79829 0.97394 1.01686 1.87770 1.19337 1.29433 1.95687 1.21962 0.90266 0.85036 1.01423 1.21324 0.94378 0.94183 1.06489 1.20575 0.80602 0.91560 0.75275 1.90616 1.66232 1.37080 1.54105 1.50193 1.03514 1.12397 1.70634 1.23466 0.84566 0.92452 1.00615 1.20145 0.92201 0.90634 0.79537 1.86043 1.70703 1.62921 1.20341 1.21730 0.95307 1.20240 1.22002 0.90921 1.25750 1.02825 0.93689 0.94569 1.69380 1.36345 1.21626 1.28353 0.85384 0.78617 0.78548 0.78043 1.19672 1.19564 1.20986 1.24152 0.83706 0.93818 1.01477 0.92949 0.88619 0.93037 0.91880 0.91729 0.90930 0.91136 0.92063 0.91745 0.92967 0.92321 0.86765 0.87800 0.92275 0.87816 0.75643 0.91422 0.88624 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.68 10.70 -148.98 -1.59 -9.27 16 3 C 0.07 0.97 5.94 71.98 0.43 1.40 16 4 C -0.11 -2.07 5.95 30.59 0.18 -1.89 16 5 C 0.06 1.20 5.94 71.98 0.43 1.63 16 6 O -0.40 -10.37 10.34 -148.98 -1.54 -11.91 16 7 C 0.09 2.48 5.23 71.98 0.38 2.86 16 8 C -0.12 -3.75 5.82 29.85 0.17 -3.58 16 9 C 0.53 20.64 8.06 87.66 0.71 21.35 16 10 O -0.60 -26.52 16.71 -3.04 -0.05 -26.57 16 11 N -0.63 -26.11 3.61 -840.31 -3.03 -29.14 16 12 C 0.11 4.79 8.23 86.48 0.71 5.50 16 13 C 0.22 10.19 1.44 -10.89 -0.02 10.18 16 14 O -0.59 -30.30 13.48 -148.98 -2.01 -32.31 16 15 C -0.55 -27.16 8.62 25.60 0.22 -26.94 16 16 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 17 C 0.03 1.56 5.40 84.66 0.46 2.02 16 18 N -0.92 -45.51 11.09 21.45 0.24 -45.27 16 19 Si 0.97 38.81 29.54 68.60 2.03 40.84 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 23 C 0.09 3.75 8.00 86.47 0.69 4.44 16 24 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 34 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.10 4.03 8.09 -2.38 -0.02 4.01 16 39 H 0.39 20.25 6.46 -74.06 -0.48 19.78 16 40 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 41 H 0.10 3.69 8.09 -2.39 -0.02 3.67 16 42 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -60.10 357.23 0.16 -59.93 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.52 Total: 35.22 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 5.61 Total: 18.48 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -2.79 Total: -74.41 kcal Atomic # 8 Polarization: -74.87 SS G_CDS: -5.19 Total: -80.06 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -60.10 0.16 -59.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328479124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.706 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds