Wall clock time and date at job start Tue Mar 31 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 359.29373 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 S 1.81408 * 109.46799 * 180.02562 * 5 4 3 7 7 O 1.42102 * 110.54035 * 291.62208 * 6 5 4 8 8 O 1.42098 * 110.54418 * 68.37375 * 6 5 4 9 9 N 1.65603 * 104.44779 * 180.02562 * 6 5 4 10 10 C 1.47429 * 125.64303 * 269.69188 * 9 6 5 11 11 C 1.55130 * 104.72103 * 155.81891 * 10 9 6 12 12 C 1.55164 * 101.48653 * 37.28858 * 11 10 9 13 13 O 1.42902 * 110.86518 * 82.77080 * 12 11 10 14 14 C 1.50696 * 110.72067 * 205.97141 * 12 11 10 15 15 H 1.07998 * 120.00399 * 113.52892 * 14 12 11 16 16 C 1.37878 * 119.99900 * 293.52384 * 14 12 11 17 17 N 1.31518 * 120.00251 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99925 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47109 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46949 * 120.00104 * 18 16 14 21 21 H 1.48497 * 109.46992 * 239.99908 * 18 16 14 22 22 C 1.47015 * 125.65207 * 89.99698 * 9 6 5 23 23 H 1.09002 * 109.47018 * 239.29146 * 3 2 1 24 24 H 1.08998 * 109.46895 * 119.29991 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99856 * 4 3 2 26 26 H 1.09001 * 109.46832 * 300.00046 * 4 3 2 27 27 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 29 29 H 1.09003 * 110.36613 * 274.74352 * 10 9 6 30 30 H 1.08996 * 110.37028 * 37.06991 * 10 9 6 31 31 H 1.09002 * 111.18815 * 279.18852 * 11 10 9 32 32 H 1.08998 * 110.94110 * 155.28736 * 11 10 9 33 33 H 0.96695 * 114.00589 * 66.39120 * 13 12 11 34 34 H 0.96999 * 120.00001 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.88435 * 300.43993 * 22 9 6 36 36 H 1.08998 * 109.88000 * 61.44706 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4414 0.0178 5 6 4.6487 -1.4406 0.0184 6 16 5.2542 -3.1505 0.0387 7 8 4.9579 -3.7696 1.2830 8 8 4.9589 -3.7988 -1.1908 9 7 6.9038 -3.0047 0.0385 10 6 7.7612 -2.9494 -1.1596 11 6 9.0433 -2.2111 -0.6931 12 6 9.2131 -2.7659 0.7459 13 8 9.8729 -4.0334 0.7282 14 6 9.9661 -1.7870 1.6094 15 1 9.4689 -1.3033 2.4372 16 6 11.2900 -1.5090 1.3428 17 7 11.8955 -2.0977 0.3345 18 14 12.2237 -0.2961 2.4136 19 1 11.3231 0.2237 3.4737 20 1 13.3829 -0.9801 3.0410 21 1 12.7076 0.8318 1.5776 22 6 7.7564 -2.9154 1.2328 23 1 2.9711 0.5256 0.8836 24 1 2.9710 0.5037 -0.8962 25 1 2.7556 -1.9664 -0.8658 26 1 2.7556 -1.9444 0.9140 27 1 5.0122 -0.9375 -0.8776 28 1 5.0114 -0.9158 0.9021 29 1 8.0031 -3.9563 -1.4998 30 1 7.2683 -2.3881 -1.9533 31 1 8.8936 -1.1314 -0.6804 32 1 9.8956 -2.4779 -1.3179 33 1 10.7917 -3.9944 0.4294 34 1 12.8269 -1.9024 0.1472 35 1 7.4730 -2.0462 1.8265 36 1 7.6538 -3.8214 1.8301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332121500.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:25 Heat of formation + Delta-G solvation = -125.042689 kcal Electronic energy + Delta-G solvation = -21111.759819 eV Core-core repulsion = 17721.989504 eV Total energy + Delta-G solvation = -3389.770316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -39.66149 -38.12913 -38.06974 -36.96896 -36.02192 -35.56340 -34.04578 -30.78197 -29.90611 -29.54263 -26.62852 -23.72419 -22.80862 -21.49792 -19.87473 -19.17596 -18.88462 -18.22080 -17.24897 -17.04857 -16.84187 -16.44775 -16.02399 -15.75138 -15.15360 -14.87292 -14.61828 -14.42469 -13.98246 -13.83212 -13.66338 -13.28836 -13.18501 -13.15715 -13.11497 -13.04264 -12.85114 -12.75482 -12.68536 -12.53339 -12.19916 -12.10095 -11.85907 -11.74076 -11.55731 -11.10965 -10.54556 -10.00747 -9.77291 -8.15905 -6.29828 -0.70580 1.47162 1.52729 1.61218 1.67954 1.81454 1.85088 2.45620 2.89147 3.07891 3.11660 3.18354 3.77580 3.86558 3.89580 4.08126 4.15698 4.35682 4.46025 4.54738 4.60764 4.75965 4.82584 4.86448 4.99416 5.05910 5.11687 5.32048 5.34760 5.47752 5.61774 5.66765 5.88488 6.18240 6.62770 6.75970 7.41593 7.55132 8.90309 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.004230 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.265669 B = 6617.470593 C = 7329.424934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.233 3.767 3 C -0.011 4.011 4 C -0.121 4.121 5 C -0.597 4.597 6 S 2.613 3.387 7 O -0.996 6.996 8 O -0.990 6.990 9 N -1.013 6.013 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.227 3.773 13 O -0.602 6.602 14 C -0.553 4.553 15 H 0.066 0.934 16 C 0.031 3.969 17 N -0.914 5.914 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.140 3.860 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.379 0.621 34 H 0.269 0.731 35 H 0.090 0.910 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 7.462 -2.956 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.083 4.083 3 C -0.052 4.052 4 C -0.162 4.162 5 C -0.731 4.731 6 S 2.714 3.286 7 O -0.987 6.987 8 O -0.981 6.981 9 N -0.850 5.850 10 C 0.000 4.000 11 C -0.165 4.165 12 C 0.186 3.814 13 O -0.412 6.412 14 C -0.591 4.591 15 H 0.084 0.916 16 C -0.170 4.170 17 N -0.554 5.554 18 Si 0.786 3.214 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.204 1.204 22 C 0.014 3.986 23 H 0.164 0.836 24 H 0.167 0.833 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.192 0.808 28 H 0.187 0.813 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.648 6.363 -2.821 14.436 hybrid contribution 1.936 0.870 0.332 2.148 sum -10.711 7.233 -2.488 13.162 Atomic orbital electron populations 1.81282 1.15433 1.10319 1.11477 1.29908 0.95934 0.91446 0.91054 1.19551 0.78542 0.97354 1.09756 1.21377 0.90713 0.98825 1.05258 1.30400 1.04947 1.21809 1.15916 1.04740 0.71422 0.79732 0.72726 1.93533 1.83435 1.75755 1.45981 1.93533 1.83369 1.74477 1.46713 1.58420 1.22791 1.90225 1.13591 1.22069 0.91519 0.99860 0.86563 1.23162 0.95412 0.99598 0.98347 1.19810 0.87831 0.81388 0.92387 1.86105 1.30925 1.33495 1.90633 1.21900 0.97033 1.25049 1.15162 0.91580 1.25653 0.98207 0.97265 0.95831 1.69677 1.12435 1.44053 1.29230 0.85480 0.78250 0.78705 0.78933 1.19120 1.21502 1.20434 1.21651 0.90167 1.00499 0.86240 0.83585 0.83296 0.89277 0.89638 0.80778 0.81321 0.93781 0.88295 0.90615 0.92016 0.76993 0.92160 0.89230 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.77 18.54 20.01 0.37 -11.40 16 2 C 0.23 3.42 15.43 89.44 1.38 4.80 16 3 C -0.01 -0.05 5.70 28.79 0.16 0.11 16 4 C -0.12 -1.21 5.18 30.59 0.16 -1.06 16 5 C -0.60 -6.83 6.18 71.98 0.44 -6.38 16 6 S 2.61 69.67 5.65 -56.49 -0.32 69.35 16 7 O -1.00 -34.15 17.60 -127.65 -2.25 -36.40 16 8 O -0.99 -31.82 17.60 -127.65 -2.25 -34.07 16 9 N -1.01 -32.78 3.62 -506.03 -1.83 -34.61 16 10 C 0.12 4.12 6.89 86.93 0.60 4.72 16 11 C -0.13 -4.91 5.69 32.07 0.18 -4.73 16 12 C 0.23 10.23 0.85 -10.35 -0.01 10.22 16 13 O -0.60 -30.41 13.09 -148.98 -1.95 -32.36 16 14 C -0.55 -26.56 8.21 25.60 0.21 -26.35 16 15 H 0.07 3.07 7.53 -2.91 -0.02 3.05 16 16 C 0.03 1.48 5.28 84.65 0.45 1.93 16 17 N -0.91 -45.19 10.70 21.45 0.23 -44.96 16 18 Si 0.96 38.64 29.54 68.60 2.03 40.66 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.14 5.43 6.24 86.73 0.54 5.97 16 23 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.78 8.04 -2.39 -0.02 2.76 16 32 H 0.06 2.65 7.77 -2.39 -0.02 2.63 16 33 H 0.38 19.55 6.98 -74.06 -0.52 19.03 16 34 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 35 H 0.09 3.00 7.63 -2.38 -0.02 2.98 16 36 H 0.04 1.74 8.07 -2.39 -0.02 1.73 16 Total: -1.00 -72.54 322.79 -1.27 -73.81 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.58 Total: 20.74 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.12 Total: -10.77 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -1.23 Total: -90.97 kcal Atomic # 8 Polarization: -96.38 SS G_CDS: -6.44 Total: -102.82 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.66 kcal Atomic # 16 Polarization: 69.67 SS G_CDS: -0.32 Total: 69.35 kcal Total: -72.54 -1.27 -73.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332121500.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.232 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds