Wall clock time and date at job start Tue Mar 31 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00095 * 2 1 4 4 O 1.20824 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99969 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47052 * 177.35838 * 5 3 2 7 7 N 1.46897 * 109.52425 * 59.40186 * 6 5 3 8 8 C 1.46905 * 110.99765 * 54.19445 * 7 6 5 9 9 C 1.52995 * 109.47262 * 179.29031 * 8 7 6 10 10 H 1.09004 * 109.46989 * 59.99578 * 9 8 7 11 11 O 1.42901 * 109.46876 * 300.00066 * 9 8 7 12 12 C 1.50699 * 109.47224 * 179.97438 * 9 8 7 13 13 H 1.07991 * 120.00108 * 0.27159 * 12 9 8 14 14 C 1.37877 * 119.99793 * 180.02562 * 12 9 8 15 15 N 1.31522 * 120.00348 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99955 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47351 * 89.99592 * 16 14 12 18 18 H 1.48503 * 109.47390 * 209.99497 * 16 14 12 19 19 H 1.48500 * 109.47229 * 329.99905 * 16 14 12 20 20 C 1.53180 * 109.57420 * 179.56159 * 6 5 3 21 21 C 1.53180 * 109.03865 * 176.91480 * 20 6 5 22 22 C 1.53088 * 109.16015 * 303.02081 * 21 20 6 23 23 O 1.42907 * 109.41659 * 57.61087 * 22 21 20 24 24 C 1.42901 * 114.09469 * 298.83195 * 23 22 21 25 25 H 1.09000 * 109.47294 * 300.00184 * 1 2 3 26 26 H 1.09002 * 109.47211 * 60.00140 * 1 2 3 27 27 H 1.08999 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47119 * 57.35770 * 5 3 2 29 29 H 1.09000 * 109.47043 * 297.36215 * 5 3 2 30 30 H 1.00894 * 111.00011 * 290.23929 * 7 6 5 31 31 H 1.08995 * 109.47470 * 59.28672 * 8 7 6 32 32 H 1.09005 * 109.46610 * 299.28955 * 8 7 6 33 33 H 0.96700 * 113.99783 * 299.99277 * 11 9 8 34 34 H 0.96998 * 119.99938 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.54328 * 296.78471 * 20 6 5 36 36 H 1.09001 * 109.54037 * 57.04650 * 20 6 5 37 37 H 1.08998 * 109.52248 * 183.11319 * 21 20 6 38 38 H 1.09001 * 109.56828 * 62.95405 * 21 20 6 39 39 H 1.08998 * 109.48448 * 297.62022 * 22 21 20 40 40 H 1.09011 * 109.47702 * 177.58898 * 22 21 20 41 41 H 1.08994 * 109.48406 * 301.18395 * 24 23 22 42 42 H 1.09000 * 109.48073 * 181.13628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7405 -0.0660 7 7 3.4604 3.4654 1.0919 8 6 3.8374 2.8051 2.3489 9 6 3.2732 3.5970 3.5302 10 1 2.1867 3.6393 3.4535 11 8 3.8040 4.9237 3.5111 12 6 3.6595 2.9194 4.8196 13 1 4.2521 2.0168 4.7988 14 6 3.2605 3.4545 6.0260 15 7 2.5433 4.5566 6.0516 16 14 3.7386 2.6141 7.6243 17 1 5.0386 3.1536 8.0977 18 1 2.6944 2.8686 8.6491 19 1 3.8630 1.1519 7.3968 20 6 5.5297 2.8239 -0.0545 21 6 5.9513 4.2894 -0.1993 22 6 5.3479 4.8612 -1.4848 23 8 3.9260 4.7244 -1.4439 24 6 3.4722 3.3722 -1.3568 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9585 0.7401 -0.8645 29 1 3.9535 0.8223 0.9135 30 1 2.4587 3.5643 1.0217 31 1 4.9238 2.7629 2.4255 32 1 3.4325 1.7932 2.3633 33 1 4.7680 4.9626 3.5760 34 1 2.2629 4.9333 6.9003 35 1 5.9095 2.4264 0.8867 36 1 5.9327 2.2447 -0.8854 37 1 7.0384 4.3526 -0.2476 38 1 5.5910 4.8592 0.6572 39 1 5.7409 4.3176 -2.3440 40 1 5.6093 5.9160 -1.5712 41 1 3.8407 2.8091 -2.2142 42 1 2.3824 3.3541 -1.3508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333357361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:14 Heat of formation + Delta-G solvation = -176.145059 kcal Electronic energy + Delta-G solvation = -24880.094693 eV Core-core repulsion = 21246.614547 eV Total energy + Delta-G solvation = -3633.480146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96515 -39.29807 -36.86468 -36.13934 -34.85246 -32.24257 -32.04030 -31.00199 -28.94709 -27.32374 -26.86335 -25.19570 -23.94780 -22.55308 -20.84653 -20.51726 -18.96609 -17.60330 -16.88304 -16.74300 -16.40788 -16.03640 -15.81043 -15.23521 -14.61855 -14.49468 -14.33090 -14.03772 -13.85457 -13.37966 -13.14607 -12.87737 -12.64837 -12.46491 -12.18317 -12.07749 -11.93306 -11.54627 -11.21315 -11.00406 -10.93223 -10.89326 -10.78071 -10.71272 -10.61400 -10.29940 -10.02768 -9.92647 -9.13924 -8.91680 -8.54518 -8.00443 -7.62088 -5.96285 -4.15135 2.17474 2.67724 3.28500 3.35515 3.37481 4.07702 4.38960 4.57956 4.66691 4.81469 4.95948 5.02813 5.04507 5.14192 5.20857 5.29614 5.30871 5.34384 5.47188 5.54728 5.57523 5.63562 5.78410 5.89372 5.99081 6.11758 6.22717 6.24058 6.31173 6.43729 6.59125 6.66707 6.90542 7.43944 7.68008 7.71688 7.77286 7.91173 8.17316 8.27984 8.89148 9.51277 9.68627 11.07676 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.005896 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.637200 B = 4747.452692 C = 6037.964710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.496 6.496 5 C -0.152 4.152 6 C 0.094 3.906 7 N -0.654 5.654 8 C 0.030 3.970 9 C 0.238 3.762 10 H 0.049 0.951 11 O -0.551 6.551 12 C -0.573 4.573 13 H 0.053 0.947 14 C 0.079 3.921 15 N -0.857 5.857 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.105 4.105 21 C -0.146 4.146 22 C 0.063 3.937 23 O -0.363 6.363 24 C 0.067 3.933 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.355 0.645 31 H 0.062 0.938 32 H 0.015 0.985 33 H 0.341 0.659 34 H 0.260 0.740 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -7.931 -15.953 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.384 6.384 5 C -0.191 4.191 6 C 0.001 3.999 7 N -0.290 5.290 8 C -0.099 4.099 9 C 0.179 3.821 10 H 0.067 0.933 11 O -0.353 6.353 12 C -0.612 4.612 13 H 0.071 0.929 14 C -0.127 4.127 15 N -0.492 5.492 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.184 4.184 22 C -0.014 4.014 23 O -0.281 6.281 24 C -0.010 4.010 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.179 0.821 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.184 0.816 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.551 -6.719 -15.878 17.428 hybrid contribution 0.244 -1.911 1.120 2.228 sum 2.795 -8.630 -14.758 17.323 Atomic orbital electron populations 1.23272 0.76277 1.03545 1.02831 1.86497 1.23582 1.33630 1.84105 1.23817 0.92097 0.81386 0.72020 1.90587 1.67158 1.35746 1.44869 1.22345 0.87854 1.02594 1.06341 1.21470 0.95909 0.87844 0.94667 1.60563 1.19625 1.49464 0.99352 1.22983 1.00239 0.95771 0.90895 1.19241 0.94101 0.80149 0.88580 0.93332 1.86585 1.22640 1.29654 1.96404 1.21635 1.36381 1.11412 0.91757 0.92866 1.25032 0.94169 0.94449 0.99020 1.70094 1.34531 1.18895 1.25715 0.86701 0.78333 0.79879 0.83585 1.20519 1.21150 1.19969 1.21583 0.93161 0.97513 1.02006 1.22047 0.99511 0.96390 1.00414 1.22520 0.81876 1.01060 0.95942 1.88002 1.20844 1.25115 1.94090 1.22842 1.01014 0.83577 0.93556 0.91472 0.91931 0.88284 0.87883 0.86673 0.82104 0.91983 0.96697 0.81629 0.93029 0.90901 0.92323 0.91897 0.88721 0.94407 0.89352 0.94025 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.76 10.57 -39.26 -0.41 -5.18 16 3 C 0.46 6.72 7.33 36.01 0.26 6.98 16 4 O -0.50 -8.39 11.41 -18.75 -0.21 -8.60 16 5 C -0.15 -1.92 4.35 -27.88 -0.12 -2.04 16 6 C 0.09 1.36 0.30 -131.46 -0.04 1.32 16 7 N -0.65 -12.14 5.14 -99.82 -0.51 -12.66 16 8 C 0.03 0.61 4.46 -3.82 -0.02 0.59 16 9 C 0.24 6.15 3.04 -27.89 -0.08 6.06 16 10 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 11 O -0.55 -14.73 12.60 -35.23 -0.44 -15.17 16 12 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 15 N -0.86 -25.86 12.84 55.43 0.71 -25.15 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.10 -1.33 4.68 -26.55 -0.12 -1.46 16 21 C -0.15 -1.91 5.97 -26.59 -0.16 -2.06 16 22 C 0.06 0.80 6.84 37.20 0.25 1.05 16 23 O -0.36 -5.78 10.67 -35.23 -0.38 -6.15 16 24 C 0.07 0.96 5.33 37.21 0.20 1.16 16 25 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.12 1.50 6.39 -51.93 -0.33 1.17 16 30 H 0.35 7.35 6.12 -39.29 -0.24 7.11 16 31 H 0.06 1.22 6.38 -51.93 -0.33 0.89 16 32 H 0.01 0.30 6.15 -51.93 -0.32 -0.02 16 33 H 0.34 8.17 9.04 45.56 0.41 8.59 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.07 0.97 6.41 -51.93 -0.33 0.64 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.54 7.76 -51.93 -0.40 1.13 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 1.68 5.74 -51.93 -0.30 1.38 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -32.73 332.54 -6.03 -38.77 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -5.61 Total: 13.79 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 0.84 Total: -0.98 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.20 Total: -37.81 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.45 Total: -35.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.73 -6.03 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333357361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.379 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds