Wall clock time and date at job start Tue Mar 31 2020 02:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00095 * 2 1 4 4 O 1.20824 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99969 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47052 * 177.35838 * 5 3 2 7 7 N 1.46897 * 109.52425 * 59.40186 * 6 5 3 8 8 C 1.46905 * 110.99765 * 54.19445 * 7 6 5 9 9 C 1.52995 * 109.47262 * 179.29031 * 8 7 6 10 10 H 1.09004 * 109.46989 * 59.99578 * 9 8 7 11 11 O 1.42901 * 109.46876 * 300.00066 * 9 8 7 12 12 C 1.50699 * 109.47224 * 179.97438 * 9 8 7 13 13 H 1.07991 * 120.00108 * 0.27159 * 12 9 8 14 14 C 1.37877 * 119.99793 * 180.02562 * 12 9 8 15 15 N 1.31522 * 120.00348 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99955 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47351 * 89.99592 * 16 14 12 18 18 H 1.48503 * 109.47390 * 209.99497 * 16 14 12 19 19 H 1.48500 * 109.47229 * 329.99905 * 16 14 12 20 20 C 1.53180 * 109.57420 * 179.56159 * 6 5 3 21 21 C 1.53180 * 109.03865 * 176.91480 * 20 6 5 22 22 C 1.53088 * 109.16015 * 303.02081 * 21 20 6 23 23 O 1.42907 * 109.41659 * 57.61087 * 22 21 20 24 24 C 1.42901 * 114.09469 * 298.83195 * 23 22 21 25 25 H 1.09000 * 109.47294 * 300.00184 * 1 2 3 26 26 H 1.09002 * 109.47211 * 60.00140 * 1 2 3 27 27 H 1.08999 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47119 * 57.35770 * 5 3 2 29 29 H 1.09000 * 109.47043 * 297.36215 * 5 3 2 30 30 H 1.00894 * 111.00011 * 290.23929 * 7 6 5 31 31 H 1.08995 * 109.47470 * 59.28672 * 8 7 6 32 32 H 1.09005 * 109.46610 * 299.28955 * 8 7 6 33 33 H 0.96700 * 113.99783 * 299.99277 * 11 9 8 34 34 H 0.96998 * 119.99938 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.54328 * 296.78471 * 20 6 5 36 36 H 1.09001 * 109.54037 * 57.04650 * 20 6 5 37 37 H 1.08998 * 109.52248 * 183.11319 * 21 20 6 38 38 H 1.09001 * 109.56828 * 62.95405 * 21 20 6 39 39 H 1.08998 * 109.48448 * 297.62022 * 22 21 20 40 40 H 1.09011 * 109.47702 * 177.58898 * 22 21 20 41 41 H 1.08994 * 109.48406 * 301.18395 * 24 23 22 42 42 H 1.09000 * 109.48073 * 181.13628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7405 -0.0660 7 7 3.4604 3.4654 1.0919 8 6 3.8374 2.8051 2.3489 9 6 3.2732 3.5970 3.5302 10 1 2.1867 3.6393 3.4535 11 8 3.8040 4.9237 3.5111 12 6 3.6595 2.9194 4.8196 13 1 4.2521 2.0168 4.7988 14 6 3.2605 3.4545 6.0260 15 7 2.5433 4.5566 6.0516 16 14 3.7386 2.6141 7.6243 17 1 5.0386 3.1536 8.0977 18 1 2.6944 2.8686 8.6491 19 1 3.8630 1.1519 7.3968 20 6 5.5297 2.8239 -0.0545 21 6 5.9513 4.2894 -0.1993 22 6 5.3479 4.8612 -1.4848 23 8 3.9260 4.7244 -1.4439 24 6 3.4722 3.3722 -1.3568 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9585 0.7401 -0.8645 29 1 3.9535 0.8223 0.9135 30 1 2.4587 3.5643 1.0217 31 1 4.9238 2.7629 2.4255 32 1 3.4325 1.7932 2.3633 33 1 4.7680 4.9626 3.5760 34 1 2.2629 4.9333 6.9003 35 1 5.9095 2.4264 0.8867 36 1 5.9327 2.2447 -0.8854 37 1 7.0384 4.3526 -0.2476 38 1 5.5910 4.8592 0.6572 39 1 5.7409 4.3176 -2.3440 40 1 5.6093 5.9160 -1.5712 41 1 3.8407 2.8091 -2.2142 42 1 2.3824 3.3541 -1.3508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333357361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:13 Heat of formation + Delta-G solvation = -202.308435 kcal Electronic energy + Delta-G solvation = -24881.229222 eV Core-core repulsion = 21246.614547 eV Total energy + Delta-G solvation = -3634.614675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08571 -40.39696 -38.21146 -37.62721 -36.36994 -34.22890 -33.34498 -32.42323 -30.11160 -29.08218 -27.80638 -26.43490 -25.64898 -23.64301 -22.41972 -21.86919 -20.15585 -18.89939 -18.68013 -17.84241 -17.53540 -17.29497 -16.89239 -16.66246 -16.54258 -15.98403 -15.66634 -15.47846 -15.18177 -14.68995 -14.52849 -14.22932 -13.90640 -13.75532 -13.48471 -13.17373 -13.05239 -12.99867 -12.84882 -12.80418 -12.54127 -12.38126 -12.04040 -11.99137 -11.84809 -11.76802 -11.36258 -11.10966 -10.90728 -10.72862 -10.23973 -10.02333 -9.07396 -8.12923 -6.40057 1.08000 1.39266 1.40221 1.50977 1.70606 2.37811 3.00997 3.12765 3.41857 3.53392 3.76150 3.91086 4.00954 4.21782 4.25882 4.26560 4.29315 4.32067 4.42499 4.44685 4.52400 4.60283 4.65732 4.66225 4.74430 4.78574 4.87470 5.01131 5.06905 5.18900 5.31200 5.37914 5.57945 5.60585 5.76362 6.05396 6.31287 6.39984 6.57368 6.71181 6.77730 7.34713 7.63894 8.91772 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.005896 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.637200 B = 4747.452692 C = 6037.964710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.528 6.528 5 C -0.146 4.146 6 C 0.091 3.909 7 N -0.665 5.665 8 C 0.056 3.944 9 C 0.236 3.764 10 H 0.000 1.000 11 O -0.569 6.569 12 C -0.585 4.585 13 H 0.063 0.937 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.102 4.102 21 C -0.144 4.144 22 C 0.059 3.941 23 O -0.396 6.396 24 C 0.069 3.931 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.339 0.661 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.351 0.649 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -10.189 -17.054 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.418 6.418 5 C -0.186 4.186 6 C -0.001 4.001 7 N -0.300 5.300 8 C -0.073 4.073 9 C 0.178 3.822 10 H 0.018 0.982 11 O -0.372 6.372 12 C -0.623 4.623 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.187 1.187 20 C -0.140 4.140 21 C -0.182 4.182 22 C -0.017 4.017 23 O -0.314 6.314 24 C -0.008 4.008 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.195 0.805 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.616 -9.010 -16.998 19.784 hybrid contribution -0.438 -1.175 1.383 1.867 sum 4.178 -10.185 -15.615 19.105 Atomic orbital electron populations 1.23517 0.75031 1.05652 1.02278 1.86489 1.24869 1.32900 1.83690 1.24272 0.92972 0.81246 0.71196 1.90593 1.68009 1.36821 1.46361 1.22345 0.86554 1.01533 1.08129 1.21624 0.97074 0.88576 0.92851 1.60504 1.18558 1.50764 1.00133 1.22504 1.00255 0.94617 0.89934 1.19108 0.91729 0.80472 0.90887 0.98166 1.86523 1.23605 1.30461 1.96631 1.22035 1.35993 1.11621 0.92663 0.91908 1.25974 0.93969 0.95010 1.03058 1.70259 1.36164 1.20857 1.26648 0.85517 0.78048 0.79163 0.78573 1.19573 1.21129 1.18669 1.21632 0.91467 0.97656 1.03249 1.22003 1.00950 0.96210 0.99036 1.22705 0.80329 1.01947 0.96759 1.87960 1.22920 1.26248 1.94305 1.22839 1.00015 0.83429 0.94540 0.93257 0.91336 0.84847 0.83667 0.86775 0.83934 0.90765 0.96589 0.80450 0.93097 0.91554 0.88504 0.89399 0.92763 0.91360 0.89002 0.90559 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -9.11 10.57 -51.42 -0.54 -9.65 16 3 C 0.46 12.94 7.33 71.24 0.52 13.47 16 4 O -0.53 -18.32 11.41 21.97 0.25 -18.07 16 5 C -0.15 -3.36 4.35 29.85 0.13 -3.23 16 6 C 0.09 2.47 0.30 3.62 0.00 2.47 16 7 N -0.67 -25.11 5.14 -469.72 -2.42 -27.53 16 8 C 0.06 2.31 4.46 86.30 0.38 2.70 16 9 C 0.24 12.68 3.04 29.85 0.09 12.77 16 10 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 11 O -0.57 -31.61 12.60 -148.98 -1.88 -33.49 16 12 C -0.58 -32.75 8.76 25.60 0.22 -32.52 16 13 H 0.06 3.32 7.74 -2.92 -0.02 3.30 16 14 C 0.02 1.26 5.40 84.65 0.46 1.72 16 15 N -0.90 -56.02 12.84 21.45 0.28 -55.74 16 16 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 C -0.10 -2.29 4.68 30.71 0.14 -2.14 16 21 C -0.14 -3.48 5.97 30.68 0.18 -3.30 16 22 C 0.06 1.36 6.84 72.01 0.49 1.86 16 23 O -0.40 -12.27 10.67 -148.98 -1.59 -13.86 16 24 C 0.07 1.86 5.33 72.02 0.38 2.24 16 25 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 26 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.70 6.39 -2.39 -0.02 2.69 16 30 H 0.34 14.73 6.12 -89.70 -0.55 14.18 16 31 H 0.07 2.87 6.38 -2.39 -0.02 2.85 16 32 H 0.02 0.65 6.15 -2.38 -0.01 0.64 16 33 H 0.35 17.37 9.04 -74.06 -0.67 16.70 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.07 1.58 6.41 -2.39 -0.02 1.57 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.75 7.76 -2.39 -0.02 1.74 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 2.68 5.74 -2.39 -0.01 2.67 16 Total: -1.00 -74.01 332.54 0.16 -73.85 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.18 Total: 40.72 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.21 Total: -2.20 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.14 Total: -83.27 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -3.76 Total: -75.07 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -74.01 0.16 -73.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333357361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.455 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds