Wall clock time and date at job start Tue Mar 31 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00396 * 2 1 4 4 C 1.52994 * 109.47193 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47023 * 65.00351 * 4 3 2 6 6 C 1.42897 * 113.99997 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.50023 * 30.05721 * 6 5 4 8 8 C 1.53032 * 109.50040 * 150.16093 * 6 5 4 9 9 C 1.53042 * 109.54307 * 181.31149 * 8 6 5 10 10 H 1.09009 * 109.52069 * 58.59738 * 9 8 6 11 11 C 1.52992 * 109.50227 * 178.68026 * 9 8 6 12 12 O 1.42900 * 109.47356 * 184.83970 * 11 9 8 13 13 C 1.53195 * 109.31127 * 298.63691 * 9 8 6 14 14 N 1.46926 * 108.77568 * 54.63050 * 13 9 8 15 15 C 1.34779 * 120.62920 * 126.37183 * 14 13 9 16 16 O 1.21685 * 119.99965 * 354.76809 * 15 14 13 17 17 C 1.46379 * 119.99820 * 174.77168 * 15 14 13 18 18 H 1.07997 * 120.00016 * 5.02143 * 17 15 14 19 19 C 1.40048 * 119.99691 * 185.02302 * 17 15 14 20 20 N 1.30673 * 119.99923 * 5.05309 * 19 17 15 21 21 Si 1.86802 * 119.99680 * 185.05968 * 19 17 15 22 22 H 1.48493 * 109.47535 * 84.99677 * 21 19 17 23 23 H 1.48504 * 109.46972 * 204.99960 * 21 19 17 24 24 H 1.48505 * 109.46821 * 324.99604 * 21 19 17 25 25 C 1.46925 * 118.73802 * 306.38862 * 14 13 9 26 26 H 1.09004 * 109.46810 * 59.99556 * 1 2 3 27 27 H 1.08996 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47161 * 300.00442 * 1 2 3 29 29 H 1.09005 * 109.46847 * 59.99856 * 3 2 1 30 30 H 1.08995 * 109.46828 * 300.00413 * 3 2 1 31 31 H 1.09003 * 109.47298 * 305.00114 * 4 3 2 32 32 H 1.09001 * 109.46923 * 184.99963 * 4 3 2 33 33 H 1.09002 * 109.46285 * 301.33239 * 8 6 5 34 34 H 1.08999 * 109.46359 * 61.28937 * 8 6 5 35 35 H 1.09002 * 109.47030 * 304.83849 * 11 9 8 36 36 H 1.09004 * 109.47410 * 64.83824 * 11 9 8 37 37 H 0.96702 * 114.00514 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.58505 * 294.83975 * 13 9 8 39 39 H 1.09004 * 109.58463 * 174.42016 * 13 9 8 40 40 H 0.96997 * 119.99368 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.59036 * 293.82618 * 25 14 13 42 42 H 1.09001 * 109.70242 * 173.46728 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3821 0.4184 -1.3216 7 1 5.8048 0.2805 -0.3265 8 6 5.6969 -0.8051 -2.1852 9 6 7.2130 -0.9972 -2.2676 10 1 7.6194 -1.1225 -1.2638 11 6 7.5257 -2.2396 -3.1038 12 8 8.9337 -2.4831 -3.0871 13 6 7.8447 0.2340 -2.9249 14 7 7.4275 1.4321 -2.1838 15 6 8.3434 2.3002 -1.7103 16 8 9.5296 2.0483 -1.8112 17 6 7.9111 3.5459 -1.0747 18 1 6.8599 3.7326 -0.9120 19 6 8.8607 4.4957 -0.6777 20 7 10.1232 4.3158 -0.9627 21 14 8.3224 6.0194 0.2593 22 1 8.2393 5.7058 1.7084 23 1 9.3099 7.1074 0.0441 24 1 6.9900 6.4562 -0.2298 25 6 5.9931 1.6657 -1.9683 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8508 0.5683 0.8427 32 1 3.9785 2.1764 0.0902 33 1 5.2424 -1.6903 -1.7403 34 1 5.2949 -0.6555 -3.1872 35 1 7.0032 -3.1000 -2.6857 36 1 7.1970 -2.0787 -4.1306 37 1 9.2050 -3.2580 -3.5980 38 1 7.5089 0.3087 -3.9592 39 1 8.9308 0.1465 -2.8966 40 1 10.7809 4.9735 -0.6874 41 1 5.5063 1.8571 -2.9245 42 1 5.8552 2.5234 -1.3099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339265430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:29 Heat of formation + Delta-G solvation = -178.810956 kcal Electronic energy + Delta-G solvation = -23812.920498 eV Core-core repulsion = 20179.324750 eV Total energy + Delta-G solvation = -3633.595748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30188 -38.13437 -36.99245 -36.77940 -34.94772 -32.54853 -32.07233 -30.83841 -28.91912 -26.84264 -26.34959 -25.26376 -24.14432 -22.59956 -21.34855 -20.24600 -18.93288 -17.16293 -17.00857 -16.57637 -16.40040 -15.85173 -15.45206 -15.22502 -15.17316 -14.82913 -14.32869 -14.03403 -13.57519 -13.40273 -13.20951 -12.92949 -12.68771 -12.34119 -12.16366 -11.74079 -11.64347 -11.47718 -11.23494 -11.17355 -10.98486 -10.81376 -10.61532 -10.46651 -10.26646 -10.09919 -9.96278 -9.78915 -9.78269 -9.35278 -8.84776 -7.55938 -7.19801 -6.21228 -4.65058 3.12685 3.18976 3.21472 3.62681 3.69294 4.08263 4.46462 4.55294 4.62154 4.94429 5.07836 5.10990 5.13860 5.21625 5.23206 5.30237 5.37618 5.42468 5.46868 5.55871 5.61741 5.68873 5.74864 5.79342 5.86818 5.90392 6.00629 6.14769 6.34574 6.44325 6.51138 6.75827 6.77569 7.02586 7.38529 7.44557 7.67935 7.79971 8.12877 8.35110 9.01205 9.43625 10.57801 10.76225 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.010100 B = 0.005956 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.717149 B = 4700.171443 C = 7299.035317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.376 6.376 6 C 0.077 3.923 7 H 0.063 0.937 8 C -0.102 4.102 9 C -0.101 4.101 10 H 0.079 0.921 11 C 0.087 3.913 12 O -0.566 6.566 13 C 0.129 3.871 14 N -0.639 5.639 15 C 0.560 3.440 16 O -0.574 6.574 17 C -0.546 4.546 18 H 0.071 0.929 19 C 0.089 3.911 20 N -0.767 5.767 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.265 1.265 25 C 0.105 3.895 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.374 0.626 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.269 0.731 41 H 0.050 0.950 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -8.607 -0.048 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.294 6.294 6 C 0.018 3.982 7 H 0.081 0.919 8 C -0.139 4.139 9 C -0.121 4.121 10 H 0.098 0.902 11 C 0.009 3.991 12 O -0.370 6.370 13 C 0.005 3.995 14 N -0.379 5.379 15 C 0.366 3.634 16 O -0.456 6.456 17 C -0.583 4.583 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.395 5.395 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.020 4.020 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.220 0.780 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.742 -8.334 0.137 16.936 hybrid contribution -0.551 0.559 0.331 0.852 sum -15.293 -7.775 0.468 17.163 Atomic orbital electron populations 1.22720 0.81491 1.02584 0.99754 1.87970 1.19232 1.27703 1.95354 1.22600 0.92768 0.85132 1.00764 1.22552 0.92692 0.98317 0.87943 1.87890 1.22115 1.81681 1.37718 1.22533 0.80308 0.96060 0.99322 0.91863 1.21445 0.94697 0.97188 1.00606 1.21523 0.94751 0.94934 1.00872 0.90225 1.22119 0.81665 0.96619 0.98720 1.86605 1.23165 1.51533 1.75733 1.21147 1.01468 0.83731 0.93143 1.48157 1.04935 1.24688 1.60082 1.18250 0.84209 0.83028 0.77910 1.90601 1.16603 1.77001 1.61377 1.20949 0.93810 1.01638 1.41895 0.91067 1.25712 0.94393 0.98674 0.94319 1.70000 1.01506 1.32791 1.35235 0.86434 0.79211 0.81098 0.80308 1.19627 1.20442 1.18959 1.21817 0.83013 0.97066 1.00124 0.94115 0.89813 0.94347 0.91990 0.92334 0.92575 0.91197 0.91680 0.91236 0.93930 0.93676 0.78049 0.94121 0.88866 0.92013 0.93170 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.88 10.67 -40.09 -0.43 -5.31 16 3 C 0.06 0.72 6.32 37.15 0.23 0.96 16 4 C 0.06 0.82 6.13 37.15 0.23 1.05 16 5 O -0.38 -5.94 9.96 -40.09 -0.40 -6.34 16 6 C 0.08 1.29 2.76 -26.61 -0.07 1.21 16 7 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 8 C -0.10 -1.55 4.82 -26.69 -0.13 -1.67 16 9 C -0.10 -1.70 2.58 -90.50 -0.23 -1.93 16 10 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 11 C 0.09 1.18 6.43 37.15 0.24 1.42 16 12 O -0.57 -8.31 13.30 -35.23 -0.47 -8.77 16 13 C 0.13 2.69 5.56 -3.71 -0.02 2.67 16 14 N -0.64 -15.01 2.97 -174.42 -0.52 -15.53 16 15 C 0.56 16.24 7.61 -12.98 -0.10 16.14 16 16 O -0.57 -18.96 14.49 5.20 0.08 -18.88 16 17 C -0.55 -15.35 8.86 -35.63 -0.32 -15.66 16 18 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16 19 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 20 N -0.77 -23.07 11.87 55.55 0.66 -22.41 16 21 Si 0.90 19.95 29.56 -169.99 -5.03 14.93 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 25 C 0.10 2.05 5.93 -3.71 -0.02 2.03 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.37 3.38 9.12 45.56 0.42 3.80 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 2.26 6.84 -51.93 -0.35 1.91 16 40 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.85 5.26 -51.93 -0.27 1.58 16 LS Contribution 344.42 15.07 5.19 5.19 Total: -1.00 -36.61 344.42 -6.05 -42.66 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.96 Total: 4.51 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 0.83 Total: 9.96 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.14 Total: -37.94 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.22 Total: -39.30 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.61 -6.05 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339265430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.154 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds