Wall clock time and date at job start Tue Mar 31 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99826 * 2 1 4 4 C 1.53007 * 109.46581 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46991 * 65.00835 * 4 3 2 6 6 C 1.42895 * 114.00238 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.49393 * 329.93342 * 6 5 4 8 8 C 1.53033 * 109.49863 * 209.83176 * 6 5 4 9 9 C 1.53046 * 109.53692 * 178.67800 * 8 6 5 10 10 H 1.08999 * 109.50267 * 301.41520 * 9 8 6 11 11 C 1.52998 * 109.49587 * 181.34863 * 9 8 6 12 12 O 1.42908 * 109.47194 * 175.00446 * 11 9 8 13 13 C 1.52764 * 109.38137 * 61.24284 * 9 8 6 14 14 N 1.46920 * 109.00584 * 305.58735 * 13 9 8 15 15 C 1.34778 * 120.62907 * 233.57979 * 14 13 9 16 16 O 1.21690 * 120.00306 * 354.89520 * 15 14 13 17 17 C 1.46375 * 120.00052 * 174.89060 * 15 14 13 18 18 H 1.07995 * 119.99882 * 15.28112 * 17 15 14 19 19 C 1.40053 * 120.00102 * 195.27413 * 17 15 14 20 20 N 1.30666 * 120.00003 * 192.03586 * 19 17 15 21 21 Si 1.86797 * 119.99768 * 12.04158 * 19 17 15 22 22 H 1.48510 * 109.46969 * 269.99701 * 21 19 17 23 23 H 1.48504 * 109.47329 * 29.99188 * 21 19 17 24 24 H 1.48496 * 109.47161 * 149.99923 * 21 19 17 25 25 C 1.46926 * 118.74136 * 53.31243 * 14 13 9 26 26 H 1.09004 * 109.46976 * 59.99644 * 1 2 3 27 27 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47258 * 300.00054 * 1 2 3 29 29 H 1.09000 * 109.46892 * 60.00523 * 3 2 1 30 30 H 1.08989 * 109.47086 * 299.99780 * 3 2 1 31 31 H 1.08992 * 109.47461 * 304.99708 * 4 3 2 32 32 H 1.09000 * 109.46414 * 184.99793 * 4 3 2 33 33 H 1.08991 * 109.46392 * 298.69981 * 8 6 5 34 34 H 1.09002 * 109.46020 * 58.66749 * 8 6 5 35 35 H 1.09002 * 109.47594 * 295.00487 * 11 9 8 36 36 H 1.08996 * 109.47251 * 55.00674 * 11 9 8 37 37 H 0.96697 * 114.00046 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.50803 * 185.70098 * 13 9 8 39 39 H 1.08999 * 109.43019 * 65.42406 * 13 9 8 40 40 H 0.96996 * 120.00019 * 354.88166 * 20 19 17 41 41 H 1.08996 * 109.58971 * 66.42836 * 25 14 13 42 42 H 1.09003 * 109.58643 * 186.85762 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4197 -1.3222 7 1 5.8788 1.2123 -0.7624 8 6 5.7999 0.4929 -2.7926 9 6 7.3203 0.3551 -2.9002 10 1 7.7992 1.1482 -2.3260 11 6 7.7402 0.4621 -4.3675 12 8 9.1664 0.4501 -4.4571 13 6 7.7470 -1.0018 -2.3430 14 7 7.2229 -1.1448 -0.9779 15 6 8.0455 -1.4508 0.0449 16 8 9.2164 -1.7027 -0.1703 17 6 7.5304 -1.4801 1.4147 18 1 6.4652 -1.5034 1.5907 19 6 8.4191 -1.4781 2.4972 20 7 7.9831 -1.7395 3.7009 21 14 10.2276 -1.1015 2.2201 22 1 10.9592 -2.3637 1.9422 23 1 10.3701 -0.1817 1.0629 24 1 10.7914 -0.4598 3.4349 25 6 5.7860 -0.9420 -0.7480 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1765 0.0902 33 1 5.3220 -0.3149 -3.3466 34 1 5.4919 1.4515 -3.2103 35 1 7.3341 -0.3825 -4.9243 36 1 7.3576 1.3921 -4.7880 37 1 9.5043 0.5153 -5.3607 38 1 8.8352 -1.0620 -2.3249 39 1 7.3456 -1.7952 -2.9735 40 1 7.0336 -1.8617 3.8569 41 1 5.2214 -1.7304 -1.2457 42 1 5.5807 -0.9626 0.3223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339265432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:36 Heat of formation + Delta-G solvation = -191.666810 kcal Electronic energy + Delta-G solvation = -23995.833753 eV Core-core repulsion = 20361.680534 eV Total energy + Delta-G solvation = -3634.153220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.49901 -38.20783 -37.20815 -37.01829 -35.23291 -32.88533 -32.35827 -30.95083 -29.04189 -26.85941 -26.33342 -25.39395 -24.16931 -22.63894 -21.49509 -20.28472 -19.05933 -17.42620 -17.27945 -16.83216 -16.61521 -15.91476 -15.56579 -15.35793 -15.18207 -14.95556 -14.21635 -14.11849 -13.75662 -13.50666 -13.28603 -13.13991 -12.76099 -12.55666 -12.23615 -12.03989 -11.91839 -11.60573 -11.48075 -11.35664 -10.85225 -10.77201 -10.58426 -10.43284 -10.26621 -9.99227 -9.90284 -9.78911 -9.50925 -9.10927 -8.89209 -7.92767 -7.50271 -6.96752 -4.86007 3.51859 3.60159 3.66119 3.69091 4.02009 4.26786 4.32688 4.39686 4.57977 4.90741 4.96207 5.02289 5.09133 5.15808 5.22460 5.23619 5.25854 5.34027 5.42981 5.45777 5.51050 5.55733 5.62199 5.68492 5.73968 5.79740 5.87628 5.98693 6.21091 6.30413 6.44528 6.54271 6.59282 7.04367 7.20783 7.44814 7.67568 7.79236 7.83660 8.17122 8.88361 9.01596 10.09042 10.36427 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.006200 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.947997 B = 4515.289873 C = 6704.848111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.061 3.939 5 O -0.375 6.375 6 C 0.078 3.922 7 H 0.065 0.935 8 C -0.103 4.103 9 C -0.101 4.101 10 H 0.081 0.919 11 C 0.088 3.912 12 O -0.567 6.567 13 C 0.127 3.873 14 N -0.631 5.631 15 C 0.558 3.442 16 O -0.612 6.612 17 C -0.602 4.602 18 H 0.076 0.924 19 C 0.065 3.935 20 N -0.835 5.835 21 Si 1.115 2.885 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.317 1.317 25 C 0.104 3.896 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.375 0.625 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.277 0.723 41 H 0.054 0.946 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 8.379 -12.182 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.011 4.011 4 C -0.016 4.016 5 O -0.293 6.293 6 C 0.019 3.981 7 H 0.083 0.917 8 C -0.141 4.141 9 C -0.121 4.121 10 H 0.099 0.901 11 C 0.009 3.991 12 O -0.371 6.371 13 C 0.003 3.997 14 N -0.367 5.367 15 C 0.367 3.633 16 O -0.503 6.503 17 C -0.638 4.638 18 H 0.094 0.906 19 C -0.152 4.152 20 N -0.462 5.462 21 Si 0.946 3.054 22 H -0.212 1.212 23 H -0.205 1.205 24 H -0.248 1.248 25 C -0.021 4.021 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.221 0.779 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.030 8.027 -10.999 16.912 hybrid contribution -2.032 0.263 -1.196 2.372 sum -12.062 8.290 -12.195 19.050 Atomic orbital electron populations 1.22729 0.81447 1.02755 0.99608 1.88017 1.19248 1.27335 1.95300 1.22566 0.92677 0.85383 1.00493 1.22569 0.92819 0.97663 0.88545 1.87886 1.21995 1.81949 1.37506 1.22469 0.80733 0.98383 0.96485 0.91728 1.21470 0.94450 1.02462 0.95690 1.21434 0.94816 1.00757 0.95103 0.90061 1.22104 0.81216 0.99348 0.96401 1.86590 1.20799 1.97294 1.32452 1.21151 1.01366 0.93392 0.83808 1.47773 1.07042 1.74758 1.07100 1.18433 0.84118 0.75624 0.85112 1.90244 1.18363 1.57827 1.83896 1.22071 0.95926 1.56001 0.89842 0.90645 1.27011 1.08301 0.88650 0.91277 1.70612 1.18261 1.34124 1.23229 0.82705 0.71841 0.78268 0.72542 1.21203 1.20463 1.24828 1.21863 0.82528 0.94967 1.02702 0.94248 0.89665 0.94305 0.91983 0.92667 0.91840 0.91821 0.91068 0.91577 0.93571 0.93761 0.77888 0.88678 0.93750 0.91161 0.92753 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.20 10.67 -40.08 -0.43 -5.63 16 3 C 0.07 0.75 6.32 37.16 0.23 0.99 16 4 C 0.06 0.82 6.13 37.16 0.23 1.05 16 5 O -0.37 -5.87 9.96 -40.08 -0.40 -6.27 16 6 C 0.08 1.28 2.76 -26.61 -0.07 1.21 16 7 H 0.06 1.09 7.79 -51.92 -0.40 0.69 16 8 C -0.10 -1.47 4.82 -26.69 -0.13 -1.59 16 9 C -0.10 -1.59 2.56 -90.72 -0.23 -1.83 16 10 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 11 C 0.09 1.08 6.43 37.16 0.24 1.32 16 12 O -0.57 -7.63 13.30 -35.23 -0.47 -8.10 16 13 C 0.13 2.49 5.51 -3.93 -0.02 2.47 16 14 N -0.63 -14.39 2.98 -174.69 -0.52 -14.91 16 15 C 0.56 15.44 7.24 -12.99 -0.09 15.35 16 16 O -0.61 -18.36 12.00 5.20 0.06 -18.29 16 17 C -0.60 -17.23 9.16 -35.63 -0.33 -17.55 16 18 H 0.08 2.12 6.02 -52.49 -0.32 1.80 16 19 C 0.07 1.90 5.52 -17.37 -0.10 1.81 16 20 N -0.83 -24.29 13.64 55.55 0.76 -23.53 16 21 Si 1.12 29.89 26.36 -169.99 -4.48 25.41 16 22 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 23 H -0.28 -7.66 6.62 56.52 0.37 -7.28 16 24 H -0.32 -8.07 7.11 56.52 0.40 -7.67 16 25 C 0.10 2.05 5.97 -3.71 -0.02 2.03 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.94 -0.42 0.15 16 31 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 32 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.37 2.99 9.12 45.56 0.42 3.40 16 38 H 0.09 2.14 6.87 -51.93 -0.36 1.78 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.28 7.77 8.72 -40.82 -0.36 7.41 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 2.05 5.23 -51.93 -0.27 1.78 16 LS Contribution 340.75 15.07 5.13 5.13 Total: -1.00 -35.11 340.75 -5.54 -40.66 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.02 Total: -1.12 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.82 Total: 6.66 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.24 Total: -38.44 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -1.23 Total: -38.30 kcal Atomic # 14 Polarization: 29.89 SS G_CDS: -4.48 Total: 25.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.11 -5.54 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339265432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.009 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds