Wall clock time and date at job start Tue Mar 31 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99826 * 2 1 4 4 C 1.53007 * 109.46581 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46991 * 65.00835 * 4 3 2 6 6 C 1.42895 * 114.00238 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.49393 * 329.93342 * 6 5 4 8 8 C 1.53033 * 109.49863 * 209.83176 * 6 5 4 9 9 C 1.53046 * 109.53692 * 178.67800 * 8 6 5 10 10 H 1.08999 * 109.50267 * 301.41520 * 9 8 6 11 11 C 1.52998 * 109.49587 * 181.34863 * 9 8 6 12 12 O 1.42908 * 109.47194 * 175.00446 * 11 9 8 13 13 C 1.52764 * 109.38137 * 61.24284 * 9 8 6 14 14 N 1.46920 * 109.00584 * 305.58735 * 13 9 8 15 15 C 1.34778 * 120.62907 * 233.57979 * 14 13 9 16 16 O 1.21690 * 120.00306 * 354.89520 * 15 14 13 17 17 C 1.46375 * 120.00052 * 174.89060 * 15 14 13 18 18 H 1.07995 * 119.99882 * 15.28112 * 17 15 14 19 19 C 1.40053 * 120.00102 * 195.27413 * 17 15 14 20 20 N 1.30666 * 120.00003 * 192.03586 * 19 17 15 21 21 Si 1.86797 * 119.99768 * 12.04158 * 19 17 15 22 22 H 1.48510 * 109.46969 * 269.99701 * 21 19 17 23 23 H 1.48504 * 109.47329 * 29.99188 * 21 19 17 24 24 H 1.48496 * 109.47161 * 149.99923 * 21 19 17 25 25 C 1.46926 * 118.74136 * 53.31243 * 14 13 9 26 26 H 1.09004 * 109.46976 * 59.99644 * 1 2 3 27 27 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47258 * 300.00054 * 1 2 3 29 29 H 1.09000 * 109.46892 * 60.00523 * 3 2 1 30 30 H 1.08989 * 109.47086 * 299.99780 * 3 2 1 31 31 H 1.08992 * 109.47461 * 304.99708 * 4 3 2 32 32 H 1.09000 * 109.46414 * 184.99793 * 4 3 2 33 33 H 1.08991 * 109.46392 * 298.69981 * 8 6 5 34 34 H 1.09002 * 109.46020 * 58.66749 * 8 6 5 35 35 H 1.09002 * 109.47594 * 295.00487 * 11 9 8 36 36 H 1.08996 * 109.47251 * 55.00674 * 11 9 8 37 37 H 0.96697 * 114.00046 * 180.02562 * 12 11 9 38 38 H 1.08996 * 109.50803 * 185.70098 * 13 9 8 39 39 H 1.08999 * 109.43019 * 65.42406 * 13 9 8 40 40 H 0.96996 * 120.00019 * 354.88166 * 20 19 17 41 41 H 1.08996 * 109.58971 * 66.42836 * 25 14 13 42 42 H 1.09003 * 109.58643 * 186.85762 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4197 -1.3222 7 1 5.8788 1.2123 -0.7624 8 6 5.7999 0.4929 -2.7926 9 6 7.3203 0.3551 -2.9002 10 1 7.7992 1.1482 -2.3260 11 6 7.7402 0.4621 -4.3675 12 8 9.1664 0.4501 -4.4571 13 6 7.7470 -1.0018 -2.3430 14 7 7.2229 -1.1448 -0.9779 15 6 8.0455 -1.4508 0.0449 16 8 9.2164 -1.7027 -0.1703 17 6 7.5304 -1.4801 1.4147 18 1 6.4652 -1.5034 1.5907 19 6 8.4191 -1.4781 2.4972 20 7 7.9831 -1.7395 3.7009 21 14 10.2276 -1.1015 2.2201 22 1 10.9592 -2.3637 1.9422 23 1 10.3701 -0.1817 1.0629 24 1 10.7914 -0.4598 3.4349 25 6 5.7860 -0.9420 -0.7480 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8508 0.5685 0.8426 32 1 3.9785 2.1765 0.0902 33 1 5.3220 -0.3149 -3.3466 34 1 5.4919 1.4515 -3.2103 35 1 7.3341 -0.3825 -4.9243 36 1 7.3576 1.3921 -4.7880 37 1 9.5043 0.5153 -5.3607 38 1 8.8352 -1.0620 -2.3249 39 1 7.3456 -1.7952 -2.9735 40 1 7.0336 -1.8617 3.8569 41 1 5.2214 -1.7304 -1.2457 42 1 5.5807 -0.9626 0.3223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339265432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:35 Heat of formation + Delta-G solvation = -220.496940 kcal Electronic energy + Delta-G solvation = -23997.083922 eV Core-core repulsion = 20361.680534 eV Total energy + Delta-G solvation = -3635.403388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04008 -39.45770 -38.70690 -38.06822 -36.67803 -35.13397 -33.92180 -32.13738 -30.25360 -28.79821 -27.15455 -26.71551 -25.90280 -23.63361 -22.83909 -21.89426 -20.80682 -19.40940 -18.26775 -18.01107 -17.71173 -17.58085 -17.04461 -16.50506 -16.31326 -16.19870 -16.07668 -15.39921 -15.31099 -15.01717 -14.74926 -14.58134 -14.26652 -14.05639 -13.83149 -13.55294 -13.19397 -12.88416 -12.79233 -12.65333 -12.32529 -12.18715 -12.02860 -11.92725 -11.85389 -11.59110 -11.29125 -11.15948 -10.87589 -10.75719 -10.61325 -10.10120 -9.35773 -9.22840 -7.12255 1.40751 1.47380 1.86994 2.09912 2.24123 2.40696 2.74553 2.86639 3.22686 3.42873 3.74054 3.79225 3.89177 3.97960 4.10316 4.17013 4.19394 4.38315 4.42126 4.45904 4.53081 4.54500 4.57126 4.58064 4.64752 4.73300 4.75863 4.83404 4.86317 4.86799 4.91676 5.09197 5.25982 5.38206 5.53195 5.80372 6.04148 6.16262 6.28697 6.63334 6.95686 7.00160 7.92989 8.09005 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.010871 B = 0.006200 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.947997 B = 4515.289873 C = 6704.848111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.067 3.933 4 C 0.052 3.948 5 O -0.377 6.377 6 C 0.087 3.913 7 H 0.056 0.944 8 C -0.093 4.093 9 C -0.095 4.095 10 H 0.058 0.942 11 C 0.092 3.908 12 O -0.597 6.597 13 C 0.124 3.876 14 N -0.631 5.631 15 C 0.551 3.449 16 O -0.641 6.641 17 C -0.617 4.617 18 H 0.071 0.929 19 C 0.035 3.965 20 N -0.846 5.846 21 Si 1.146 2.854 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.398 0.602 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.278 0.722 41 H 0.061 0.939 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 9.838 -14.182 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.009 4.009 4 C -0.024 4.024 5 O -0.295 6.295 6 C 0.028 3.972 7 H 0.074 0.926 8 C -0.130 4.130 9 C -0.115 4.115 10 H 0.077 0.923 11 C 0.014 3.986 12 O -0.406 6.406 13 C 0.001 3.999 14 N -0.365 5.365 15 C 0.358 3.642 16 O -0.535 6.535 17 C -0.653 4.653 18 H 0.089 0.911 19 C -0.180 4.180 20 N -0.474 5.474 21 Si 0.976 3.024 22 H -0.219 1.219 23 H -0.222 1.222 24 H -0.223 1.223 25 C -0.021 4.021 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.498 9.505 -13.021 19.801 hybrid contribution -1.676 -0.226 -0.609 1.798 sum -13.174 9.279 -13.630 21.105 Atomic orbital electron populations 1.22910 0.79487 1.03581 1.01021 1.87956 1.21560 1.28735 1.95626 1.22656 0.90878 0.85035 1.02370 1.22803 0.94747 0.97997 0.86897 1.87888 1.21024 1.82257 1.38349 1.22289 0.81425 0.95536 0.97994 0.92572 1.21416 0.93014 1.04703 0.93888 1.21370 0.95869 0.96998 0.97266 0.92306 1.22102 0.80939 1.01837 0.93709 1.86533 1.21636 1.97474 1.34942 1.21335 0.99422 0.96854 0.82304 1.47699 1.07873 1.73344 1.07593 1.18402 0.84182 0.75583 0.86032 1.90215 1.19609 1.58992 1.84674 1.22217 0.95863 1.56392 0.90840 0.91054 1.27683 1.10245 0.88643 0.91427 1.70621 1.18377 1.35072 1.23340 0.82297 0.69949 0.77576 0.72626 1.21910 1.22158 1.22282 1.21953 0.80767 0.97737 1.01615 0.92826 0.89282 0.92825 0.89649 0.91073 0.94321 0.89732 0.89842 0.88394 0.91645 0.90548 0.75199 0.92020 0.91847 0.91180 0.92027 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.94 10.67 -144.35 -1.54 -12.48 16 3 C 0.07 1.40 6.32 71.98 0.45 1.85 16 4 C 0.05 1.35 6.13 71.98 0.44 1.79 16 5 O -0.38 -11.16 9.96 -144.35 -1.44 -12.59 16 6 C 0.09 2.74 2.76 30.67 0.08 2.82 16 7 H 0.06 1.87 7.79 -2.38 -0.02 1.85 16 8 C -0.09 -2.35 4.82 30.62 0.15 -2.20 16 9 C -0.10 -2.81 2.56 -10.86 -0.03 -2.84 16 10 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 11 C 0.09 1.95 6.43 71.98 0.46 2.42 16 12 O -0.60 -14.82 13.30 -148.98 -1.98 -16.80 16 13 C 0.12 4.80 5.51 86.22 0.48 5.27 16 14 N -0.63 -29.11 2.98 -824.83 -2.46 -31.56 16 15 C 0.55 31.26 7.24 86.36 0.63 31.88 16 16 O -0.64 -39.44 12.00 -4.32 -0.05 -39.49 16 17 C -0.62 -36.28 9.16 24.83 0.23 -36.05 16 18 H 0.07 4.16 6.02 -2.91 -0.02 4.15 16 19 C 0.03 2.06 5.52 85.31 0.47 2.53 16 20 N -0.85 -49.79 13.64 21.84 0.30 -49.49 16 21 Si 1.15 61.53 26.36 68.60 1.81 63.34 16 22 H -0.29 -15.86 7.11 99.48 0.71 -15.16 16 23 H -0.29 -16.44 6.62 99.48 0.66 -15.78 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 C 0.10 4.09 5.97 86.36 0.52 4.61 16 26 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.18 8.02 -2.39 -0.02 1.16 16 32 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.40 5.32 9.12 -74.06 -0.68 4.65 16 38 H 0.06 2.82 6.87 -2.39 -0.02 2.81 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.28 15.83 8.72 -92.71 -0.81 15.02 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.07 3.11 5.23 -2.39 -0.01 3.10 16 Total: -1.00 -77.42 340.75 0.02 -77.40 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.25 Total: 7.91 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.13 Total: 13.77 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.16 Total: -81.05 kcal Atomic # 8 Polarization: -76.36 SS G_CDS: -5.01 Total: -81.37 kcal Atomic # 14 Polarization: 61.53 SS G_CDS: 1.81 Total: 63.34 kcal Total: -77.42 0.02 -77.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339265432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.097 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds