Wall clock time and date at job start Tue Mar 31 2020 03:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28714 * 126.03362 * 2 1 4 4 N 1.28516 * 110.63668 * 179.73779 * 3 2 1 5 5 C 1.33325 * 109.43545 * 0.39741 * 4 3 2 6 6 C 1.37006 * 106.37264 * 359.61743 * 5 4 3 7 7 C 1.47239 * 127.18689 * 180.20661 * 6 5 4 8 8 O 1.21616 * 119.99620 * 174.36553 * 7 6 5 9 9 N 1.34771 * 119.99831 * 354.36046 * 7 6 5 10 10 S 1.65602 * 119.99863 * 185.07802 * 9 7 6 11 11 O 1.42101 * 104.27707 * 181.07378 * 10 9 7 12 12 O 1.42104 * 104.27365 * 308.92880 * 10 9 7 13 13 C 1.81393 * 104.44947 * 64.99938 * 10 9 7 14 14 C 1.53002 * 109.47335 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47468 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00232 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99339 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47007 * 89.99301 * 19 17 15 21 21 H 1.48489 * 109.47061 * 209.99731 * 19 17 15 22 22 H 1.48504 * 109.46892 * 329.99969 * 19 17 15 23 23 H 1.09002 * 109.47281 * 274.04533 * 1 2 3 24 24 H 1.09001 * 109.47493 * 34.04222 * 1 2 3 25 25 H 1.09000 * 109.47643 * 154.04556 * 1 2 3 26 26 H 1.07999 * 126.80980 * 179.87917 * 5 4 3 27 27 H 0.97004 * 120.00865 * 5.07282 * 9 7 6 28 28 H 1.09002 * 109.47561 * 300.00126 * 13 10 9 29 29 H 1.09000 * 109.47325 * 60.00427 * 13 10 9 30 30 H 1.09009 * 109.47005 * 299.99830 * 14 13 10 31 31 H 1.09002 * 109.47373 * 59.99518 * 14 13 10 32 32 H 0.97008 * 119.99564 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4612 0.6997 0.0055 5 6 3.5551 -0.6303 0.0007 6 6 2.2711 -1.1081 0.0005 7 6 1.8461 -2.5179 0.0002 8 8 0.6671 -2.7975 0.1034 9 7 2.7638 -3.4982 -0.1145 10 16 2.2780 -5.0763 -0.2414 11 8 3.4917 -5.8115 -0.3170 12 8 1.3797 -5.2548 0.8451 13 6 1.3893 -5.1507 -1.8209 14 6 0.8840 -6.5757 -2.0553 15 6 0.1461 -6.6377 -3.3678 16 1 0.0471 -5.7494 -3.9740 17 6 -0.4034 -7.8282 -3.7943 18 7 -0.2832 -8.9097 -3.0557 19 14 -1.3186 -7.9048 -5.4209 20 1 -0.3661 -8.2411 -6.5094 21 1 -2.3736 -8.9472 -5.3466 22 1 -1.9437 -6.5869 -5.6997 23 1 -0.3634 0.0725 1.0251 24 1 -0.3634 0.8515 -0.5753 25 1 -0.3634 -0.9240 -0.4497 26 1 4.4632 -1.2148 0.0016 27 1 3.7088 -3.2796 -0.1228 28 1 0.5423 -4.4651 -1.7940 29 1 2.0617 -4.8657 -2.6300 30 1 1.7308 -7.2616 -2.0822 31 1 0.2114 -6.8604 -1.2461 32 1 -0.6695 -9.7474 -3.3559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339826389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:31 Heat of formation + Delta-G solvation = -10.869356 kcal Electronic energy + Delta-G solvation = -20652.622088 eV Core-core repulsion = 17164.262357 eV Total energy + Delta-G solvation = -3488.359732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.71216 -40.13600 -36.86941 -35.79586 -35.36092 -34.56769 -33.99712 -31.72776 -31.28253 -28.43974 -25.75054 -24.97728 -23.05245 -21.78966 -21.44904 -19.58006 -18.83746 -17.73397 -17.24744 -17.20323 -16.62446 -15.88223 -15.56643 -15.29096 -14.96437 -14.62224 -14.60163 -13.68990 -13.57389 -13.38849 -12.68375 -12.58126 -12.47099 -11.92887 -11.86578 -11.77306 -11.54040 -11.20640 -11.13278 -11.06318 -10.76310 -10.60623 -10.49149 -10.45306 -9.95455 -9.81370 -9.28521 -8.56533 -6.18968 -4.25002 0.24252 0.41812 1.71971 1.84487 2.38630 2.53889 3.22380 3.28961 3.31449 3.55508 3.92356 3.97119 4.31300 4.32684 4.39357 4.49792 4.63453 4.72130 5.05740 5.16522 5.22665 5.44337 5.50416 5.55833 5.92358 6.27512 6.34590 6.99854 7.19149 7.25181 7.73568 7.92181 8.08233 8.77845 9.40110 10.92016 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.004331 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.327624 B = 6464.148857 C = 7174.555378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.249 5.249 3 N -0.052 5.052 4 N -0.273 5.273 5 C 0.013 3.987 6 C -0.080 4.080 7 C 0.621 3.379 8 O -0.482 6.482 9 N -1.045 6.045 10 S 2.564 3.436 11 O -0.945 6.945 12 O -0.930 6.930 13 C -0.574 4.574 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.203 0.797 27 H 0.431 0.569 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 16.207 5.087 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.046 5.046 3 N -0.033 5.033 4 N -0.135 5.135 5 C -0.148 4.148 6 C -0.215 4.215 7 C 0.405 3.595 8 O -0.353 6.353 9 N -0.805 5.805 10 S 2.664 3.336 11 O -0.935 6.935 12 O -0.921 6.921 13 C -0.709 4.709 14 C -0.010 4.010 15 C -0.561 4.561 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.119 0.881 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.220 0.780 27 H 0.267 0.733 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.402 16.728 5.876 18.268 hybrid contribution -0.274 -0.807 -1.362 1.607 sum 4.128 15.921 4.513 17.055 Atomic orbital electron populations 1.22711 0.70856 1.07386 1.06148 1.47729 1.10163 1.03249 1.43484 1.78312 0.96718 1.11399 1.16886 1.74949 1.09107 1.12313 1.17105 1.23987 0.96625 0.92088 1.02103 1.21805 0.91918 0.90386 1.17418 1.16514 0.85195 0.83357 0.74441 1.91023 1.15726 1.83443 1.45067 1.55326 1.17889 1.27647 1.79641 1.06937 0.75644 0.71500 0.79507 1.93615 1.44946 1.66615 1.88351 1.93616 1.65831 1.81968 1.50635 1.30349 1.12711 1.11655 1.16145 1.19014 0.97641 0.84499 0.99838 1.20950 1.35473 0.95768 1.03883 0.91965 1.25059 0.96087 0.95548 0.97685 1.69953 1.44743 1.00297 1.37705 0.86441 0.79492 0.77976 0.83216 1.20412 1.20943 1.19750 0.88072 0.87559 0.86152 0.77999 0.73301 0.85214 0.85739 0.94600 0.94457 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.98 59.85 0.66 1.15 16 2 N -0.25 -2.58 3.79 -64.12 -0.24 -2.83 16 3 N -0.05 -0.60 13.14 60.35 0.79 0.19 16 4 N -0.27 -3.19 12.35 30.47 0.38 -2.81 16 5 C 0.01 0.12 11.54 -17.35 -0.20 -0.08 16 6 C -0.08 -0.84 6.98 -82.33 -0.57 -1.42 16 7 C 0.62 7.55 7.54 -12.61 -0.09 7.45 16 8 O -0.48 -7.19 13.08 -13.06 -0.17 -7.36 16 9 N -1.05 -11.71 5.59 30.39 0.17 -11.54 16 10 S 2.56 42.19 5.12 -107.50 -0.55 41.64 16 11 O -0.94 -17.14 18.08 -57.54 -1.04 -18.18 16 12 O -0.93 -18.74 16.92 -65.15 -1.10 -19.85 16 13 C -0.57 -10.39 5.84 37.16 0.22 -10.17 16 14 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 15 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 19 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.12 0.96 6.36 -51.93 -0.33 0.63 16 26 H 0.20 0.96 7.56 -52.49 -0.40 0.56 16 27 H 0.43 2.98 7.82 -34.47 -0.27 2.71 16 28 H 0.13 2.24 7.40 -51.92 -0.38 1.86 16 29 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 30 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -36.73 300.57 -5.10 -41.83 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.04 Total: -1.06 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.55 Total: -15.22 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 1.83 Total: -42.03 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.31 Total: -45.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 42.19 SS G_CDS: -0.55 Total: 41.64 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.73 -5.10 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339826389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -36.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds