Wall clock time and date at job start Tue Mar 31 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28714 * 126.03362 * 2 1 4 4 N 1.28516 * 110.63668 * 179.73779 * 3 2 1 5 5 C 1.33325 * 109.43545 * 0.39741 * 4 3 2 6 6 C 1.37006 * 106.37264 * 359.61743 * 5 4 3 7 7 C 1.47239 * 127.18689 * 180.20661 * 6 5 4 8 8 O 1.21616 * 119.99620 * 174.36553 * 7 6 5 9 9 N 1.34771 * 119.99831 * 354.36046 * 7 6 5 10 10 S 1.65602 * 119.99863 * 185.07802 * 9 7 6 11 11 O 1.42101 * 104.27707 * 181.07378 * 10 9 7 12 12 O 1.42104 * 104.27365 * 308.92880 * 10 9 7 13 13 C 1.81393 * 104.44947 * 64.99938 * 10 9 7 14 14 C 1.53002 * 109.47335 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47468 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00232 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99339 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47007 * 89.99301 * 19 17 15 21 21 H 1.48489 * 109.47061 * 209.99731 * 19 17 15 22 22 H 1.48504 * 109.46892 * 329.99969 * 19 17 15 23 23 H 1.09002 * 109.47281 * 274.04533 * 1 2 3 24 24 H 1.09001 * 109.47493 * 34.04222 * 1 2 3 25 25 H 1.09000 * 109.47643 * 154.04556 * 1 2 3 26 26 H 1.07999 * 126.80980 * 179.87917 * 5 4 3 27 27 H 0.97004 * 120.00865 * 5.07282 * 9 7 6 28 28 H 1.09002 * 109.47561 * 300.00126 * 13 10 9 29 29 H 1.09000 * 109.47325 * 60.00427 * 13 10 9 30 30 H 1.09009 * 109.47005 * 299.99830 * 14 13 10 31 31 H 1.09002 * 109.47373 * 59.99518 * 14 13 10 32 32 H 0.97008 * 119.99564 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4612 0.6997 0.0055 5 6 3.5551 -0.6303 0.0007 6 6 2.2711 -1.1081 0.0005 7 6 1.8461 -2.5179 0.0002 8 8 0.6671 -2.7975 0.1034 9 7 2.7638 -3.4982 -0.1145 10 16 2.2780 -5.0763 -0.2414 11 8 3.4917 -5.8115 -0.3170 12 8 1.3797 -5.2548 0.8451 13 6 1.3893 -5.1507 -1.8209 14 6 0.8840 -6.5757 -2.0553 15 6 0.1461 -6.6377 -3.3678 16 1 0.0471 -5.7494 -3.9740 17 6 -0.4034 -7.8282 -3.7943 18 7 -0.2832 -8.9097 -3.0557 19 14 -1.3186 -7.9048 -5.4209 20 1 -0.3661 -8.2411 -6.5094 21 1 -2.3736 -8.9472 -5.3466 22 1 -1.9437 -6.5869 -5.6997 23 1 -0.3634 0.0725 1.0251 24 1 -0.3634 0.8515 -0.5753 25 1 -0.3634 -0.9240 -0.4497 26 1 4.4632 -1.2148 0.0016 27 1 3.7088 -3.2796 -0.1228 28 1 0.5423 -4.4651 -1.7940 29 1 2.0617 -4.8657 -2.6300 30 1 1.7308 -7.2616 -2.0822 31 1 0.2114 -6.8604 -1.2461 32 1 -0.6695 -9.7474 -3.3559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339826389.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:29 Heat of formation + Delta-G solvation = -41.341719 kcal Electronic energy + Delta-G solvation = -20653.943469 eV Core-core repulsion = 17164.262357 eV Total energy + Delta-G solvation = -3489.681113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -44.50609 -41.17944 -38.32609 -37.26194 -36.27121 -35.92141 -35.46787 -33.17602 -32.55250 -29.10495 -27.65226 -25.91027 -23.92655 -23.54165 -22.36250 -20.78654 -19.84857 -19.19637 -18.36663 -18.05543 -17.99633 -17.28656 -16.76862 -16.56426 -16.42646 -16.12407 -15.39213 -15.16799 -14.48963 -14.29923 -14.10375 -13.80425 -13.75834 -13.38999 -13.34382 -13.27417 -12.94496 -12.83982 -12.38621 -12.32258 -12.26699 -12.09439 -11.81593 -11.70132 -11.35002 -11.10177 -10.75153 -10.64009 -8.26299 -6.39786 -1.11274 -0.44055 0.90020 1.00632 1.42089 1.42762 1.43371 1.54308 1.56544 2.37163 2.50495 2.69945 3.07646 3.10185 3.25207 3.58053 3.63172 3.91302 3.98138 4.04112 4.21639 4.50543 4.62078 4.70226 4.86011 5.18557 5.24743 5.25119 5.44839 5.67910 6.03998 6.07651 6.73156 7.12704 7.30349 8.85905 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.004331 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.327624 B = 6464.148857 C = 7174.555378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.246 5.246 3 N -0.065 5.065 4 N -0.299 5.299 5 C 0.031 3.969 6 C -0.093 4.093 7 C 0.627 3.373 8 O -0.510 6.510 9 N -1.024 6.024 10 S 2.603 3.397 11 O -0.960 6.960 12 O -0.969 6.969 13 C -0.578 4.578 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.075 0.925 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.972 3.028 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.112 0.888 26 H 0.245 0.755 27 H 0.453 0.547 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.017 0.983 31 H 0.008 0.992 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 17.892 4.187 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.044 5.044 3 N -0.046 5.046 4 N -0.160 5.160 5 C -0.130 4.130 6 C -0.229 4.229 7 C 0.413 3.587 8 O -0.383 6.383 9 N -0.790 5.790 10 S 2.702 3.298 11 O -0.950 6.950 12 O -0.959 6.959 13 C -0.711 4.711 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.093 0.907 17 C -0.200 4.200 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.184 1.184 23 H 0.133 0.867 24 H 0.148 0.852 25 H 0.130 0.870 26 H 0.261 0.739 27 H 0.294 0.706 28 H 0.156 0.844 29 H 0.173 0.827 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.074 18.434 4.960 19.752 hybrid contribution -0.438 -1.249 -1.024 1.673 sum 4.636 17.185 3.937 18.229 Atomic orbital electron populations 1.22974 0.69493 1.08015 1.07424 1.48016 1.11071 1.02940 1.42410 1.78291 0.97111 1.11822 1.17383 1.74950 1.09208 1.13589 1.18232 1.24707 0.97488 0.91415 0.99437 1.21624 0.92617 0.89413 1.19250 1.16644 0.84632 0.83943 0.73496 1.91026 1.17068 1.83789 1.46421 1.54666 1.19314 1.25699 1.79283 1.05462 0.74458 0.72024 0.77866 1.93592 1.45197 1.68068 1.88192 1.93571 1.67153 1.83341 1.51804 1.30244 1.14139 1.07705 1.19001 1.18851 0.96448 0.88162 0.98360 1.21469 1.35242 0.96251 1.04829 0.90701 1.26062 0.97100 0.95233 1.01560 1.70091 1.46170 1.01015 1.39869 0.85339 0.78137 0.78364 0.78583 1.19445 1.20938 1.18404 0.86750 0.85236 0.86952 0.73920 0.70595 0.84353 0.82709 0.96491 0.97345 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.98 127.77 1.40 2.18 16 2 N -0.25 -4.65 3.79 -356.77 -1.35 -6.01 16 3 N -0.06 -1.40 13.14 37.02 0.49 -0.91 16 4 N -0.30 -6.32 12.35 -57.50 -0.71 -7.03 16 5 C 0.03 0.48 11.54 84.18 0.97 1.45 16 6 C -0.09 -1.76 6.98 40.41 0.28 -1.47 16 7 C 0.63 14.03 7.54 86.61 0.65 14.68 16 8 O -0.51 -14.73 13.08 13.44 0.18 -14.56 16 9 N -1.02 -20.54 5.59 -176.03 -0.98 -21.52 16 10 S 2.60 83.35 5.12 -56.49 -0.29 83.06 16 11 O -0.96 -33.76 18.08 -127.65 -2.31 -36.07 16 12 O -0.97 -39.07 16.92 -120.37 -2.04 -41.11 16 13 C -0.58 -20.48 5.84 71.98 0.42 -20.06 16 14 C 0.02 1.05 4.98 29.85 0.15 1.19 16 15 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 18 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 19 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 1.68 6.36 -2.39 -0.02 1.67 16 26 H 0.24 1.21 7.56 -2.91 -0.02 1.19 16 27 H 0.45 4.73 7.82 -96.74 -0.76 3.97 16 28 H 0.14 4.67 7.40 -2.39 -0.02 4.65 16 29 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -80.34 300.57 0.28 -80.06 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.42 Total: 5.10 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.57 Total: -30.32 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -2.28 Total: -90.47 kcal Atomic # 8 Polarization: -87.56 SS G_CDS: -4.17 Total: -91.73 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 83.35 SS G_CDS: -0.29 Total: 83.06 kcal Total: -80.34 0.28 -80.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339826389.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.719 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds