Wall clock time and date at job start Tue Mar 31 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47395 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21613 * 119.99966 * 0.02562 * 12 11 10 14 14 C 1.47380 * 119.99852 * 180.27819 * 12 11 10 15 15 C 1.36414 * 127.19289 * 359.41239 * 14 12 11 16 16 O 1.33657 * 108.39539 * 179.83849 * 15 14 12 17 17 C 1.34218 * 110.90829 * 0.44701 * 16 15 14 18 18 S 1.76192 * 125.43554 * 179.74925 * 17 16 15 19 19 N 1.65598 * 107.21826 * 269.97484 * 18 17 16 20 20 O 1.42106 * 106.40607 * 23.51624 * 18 17 16 21 21 O 1.42100 * 106.40182 * 156.43253 * 18 17 16 22 22 C 1.34177 * 109.12322 * 359.72524 * 17 16 15 23 23 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46468 * 60.00319 * 9 7 2 25 25 H 1.09002 * 109.47275 * 300.00904 * 9 7 2 26 26 H 1.08998 * 109.47186 * 60.00403 * 10 9 7 27 27 H 1.08997 * 109.47401 * 300.00322 * 10 9 7 28 28 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 29 29 H 1.08002 * 125.80220 * 359.97438 * 15 14 12 30 30 H 0.97003 * 120.00196 * 0.02562 * 19 18 17 31 31 H 0.97002 * 119.99930 * 180.02562 * 19 18 17 32 32 H 1.07998 * 127.01998 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5130 -4.9308 0.0020 12 6 2.1869 -6.0979 0.0013 13 8 3.4030 -6.0979 0.0008 14 6 1.4500 -7.3743 -0.0043 15 6 0.0966 -7.5451 0.0018 16 8 -0.1631 -8.8562 -0.0103 17 6 0.9738 -9.5696 -0.0146 18 16 1.0759 -11.3286 -0.0238 19 7 1.1059 -11.8261 1.5553 20 8 -0.1490 -11.7989 -0.5696 21 8 2.3463 -11.6539 -0.5712 22 6 2.0200 -8.7295 -0.0114 23 1 -0.4849 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6046 -0.8890 28 1 0.5430 -4.9308 0.0020 29 1 -0.6399 -6.7552 0.0123 30 1 1.0680 -11.1721 2.2707 31 1 1.1613 -12.7716 1.7650 32 1 3.0669 -8.9947 -0.0130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342261699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:31 Heat of formation + Delta-G solvation = -135.225161 kcal Electronic energy + Delta-G solvation = -19668.897520 eV Core-core repulsion = 16142.852565 eV Total energy + Delta-G solvation = -3526.044955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 4.09 seconds Orbital eigenvalues (eV) -43.86244 -40.54658 -38.41901 -37.13300 -36.67800 -34.92806 -34.27109 -34.13294 -32.17760 -30.90761 -27.06490 -24.80197 -23.64593 -22.81691 -21.91298 -20.61509 -20.03323 -18.62971 -18.54318 -17.98213 -17.42789 -17.39973 -16.89493 -16.60408 -16.55091 -16.42011 -16.35726 -14.96127 -14.84996 -14.54087 -14.31974 -13.99609 -13.43743 -13.34716 -13.27532 -13.24471 -12.96444 -12.86607 -12.54434 -12.27632 -11.73294 -11.51131 -11.43622 -11.32662 -11.16037 -10.61990 -10.56042 -10.09391 -8.25213 -6.34926 -0.93666 -0.14036 0.28431 1.41894 1.42387 1.51934 1.53724 1.96579 2.12466 2.20065 2.43074 2.48733 3.10279 3.27914 3.51669 3.60706 3.96908 4.07828 4.46884 4.46965 4.54100 4.75275 4.83641 5.18158 5.23154 5.38477 5.45686 5.57439 5.77242 6.14922 6.28891 6.48922 6.78068 7.10689 7.34519 8.86446 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.052821 B = 0.002642 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.960453 B =10594.757359 C =10930.734008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.707 5.707 12 C 0.580 3.420 13 O -0.585 6.585 14 C -0.278 4.278 15 C 0.104 3.896 16 O -0.118 6.118 17 C -0.581 4.581 18 S 2.772 3.228 19 N -1.227 6.227 20 O -0.975 6.975 21 O -0.969 6.969 22 C -0.035 4.035 23 H 0.266 0.734 24 H 0.012 0.988 25 H 0.014 0.986 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.412 0.588 29 H 0.269 0.731 30 H 0.432 0.568 31 H 0.436 0.564 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -22.833 4.427 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.357 5.357 12 C 0.368 3.632 13 O -0.467 6.467 14 C -0.283 4.283 15 C 0.030 3.970 16 O -0.011 6.011 17 C -0.708 4.708 18 S 2.851 3.149 19 N -0.911 5.911 20 O -0.965 6.965 21 O -0.958 6.958 22 C -0.057 4.057 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.249 0.751 29 H 0.284 0.716 30 H 0.262 0.738 31 H 0.271 0.729 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.355 -23.280 3.483 23.656 hybrid contribution 0.255 1.890 0.560 1.988 sum -2.099 -21.389 4.043 21.869 Atomic orbital electron populations 1.70032 1.07415 1.28011 1.50974 1.25814 0.95776 1.02928 0.94447 0.85491 0.78674 0.78701 0.78463 1.19908 1.20534 1.19153 1.21466 0.93606 0.91987 1.51557 0.92387 1.19141 0.94194 0.91413 0.96717 1.21301 0.95171 0.81641 1.00200 1.45922 1.11086 1.05191 1.73549 1.17536 0.86555 0.83228 0.75856 1.90765 1.15194 1.88096 1.52628 1.21653 0.94673 0.93722 1.18287 1.25896 0.96392 0.84679 0.90046 1.83982 1.30711 1.16978 1.69402 1.35223 0.88524 1.21333 1.25748 0.99950 0.72966 0.69159 0.72780 1.52555 1.94544 1.19045 1.24966 1.93597 1.47321 1.77701 1.77842 1.93654 1.44007 1.80327 1.77834 1.23195 1.01075 0.90017 0.91364 0.92518 0.96993 0.96795 0.93116 0.93351 0.75094 0.71584 0.73793 0.72915 0.79989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 13.29 21.45 0.28 -52.20 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -29.58 9.11 25.60 0.23 -29.34 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.02 1.08 5.09 29.85 0.15 1.24 16 10 C 0.14 5.68 5.61 86.38 0.48 6.17 16 11 N -0.71 -22.31 5.55 -466.44 -2.59 -24.90 16 12 C 0.58 18.83 7.81 86.65 0.68 19.51 16 13 O -0.58 -24.07 16.98 -4.07 -0.07 -24.14 16 14 C -0.28 -6.69 6.31 -18.99 -0.12 -6.81 16 15 C 0.10 1.69 11.61 67.39 0.78 2.47 16 16 O -0.12 -2.07 10.52 4.39 0.05 -2.03 16 17 C -0.58 -10.46 7.29 66.89 0.49 -9.97 16 18 S 2.77 41.51 6.43 -56.49 -0.36 41.14 16 19 N -1.23 -7.30 9.55 37.02 0.35 -6.94 16 20 O -0.98 -21.07 18.02 -127.90 -2.30 -23.38 16 21 O -0.97 -20.56 17.82 -128.00 -2.28 -22.84 16 22 C -0.03 -0.77 10.70 23.65 0.25 -0.51 16 23 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 24 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.41 10.00 7.44 -92.71 -0.69 9.31 16 29 H 0.27 1.81 7.47 -2.91 -0.02 1.78 16 30 H 0.43 0.82 8.92 -96.74 -0.86 -0.04 16 31 H 0.44 0.84 8.96 -96.74 -0.87 -0.03 16 32 H 0.18 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -80.81 307.48 -2.70 -83.50 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -1.22 Total: 3.45 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 3.41 Total: -16.28 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.95 Total: -84.04 kcal Atomic # 8 Polarization: -67.77 SS G_CDS: -4.61 Total: -72.38 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 41.51 SS G_CDS: -0.36 Total: 41.14 kcal Total: -80.81 -2.70 -83.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342261699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.723 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds