Wall clock time and date at job start Tue Mar 31 2020 02:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00475 * 2 1 4 4 O 1.20826 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00261 * 179.97438 * 3 2 1 6 6 N 1.46897 * 109.47289 * 183.80924 * 5 3 2 7 7 C 1.46907 * 111.00021 * 283.70288 * 6 5 3 8 8 C 1.53004 * 109.47047 * 169.99799 * 7 6 5 9 9 H 1.09002 * 109.46902 * 59.99872 * 8 7 6 10 10 O 1.42896 * 109.47245 * 299.99960 * 8 7 6 11 11 C 1.50696 * 109.47084 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99752 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00166 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00335 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 120.00013 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47373 * 270.00693 * 15 13 11 17 17 H 1.48503 * 109.46731 * 30.00111 * 15 13 11 18 18 H 1.48499 * 109.47002 * 150.00138 * 15 13 11 19 19 C 1.46893 * 111.00206 * 159.74739 * 6 5 3 20 20 C 1.53172 * 109.54511 * 52.90771 * 19 6 5 21 21 C 1.53092 * 109.16812 * 183.15500 * 20 19 6 22 22 O 1.42901 * 109.41358 * 57.60419 * 21 20 19 23 23 C 1.42894 * 114.10404 * 298.84813 * 22 21 20 24 24 C 1.53099 * 109.41537 * 61.15230 * 23 22 21 25 25 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46787 * 300.00270 * 1 2 3 27 27 H 1.08998 * 109.47212 * 59.99584 * 1 2 3 28 28 H 1.09005 * 109.46670 * 63.81073 * 5 3 2 29 29 H 1.08999 * 109.47002 * 303.81222 * 5 3 2 30 30 H 1.09002 * 109.47374 * 49.99961 * 7 6 5 31 31 H 1.08997 * 109.46961 * 289.99743 * 7 6 5 32 32 H 0.96704 * 114.00028 * 300.00274 * 10 8 7 33 33 H 0.96993 * 120.00280 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.54373 * 173.17708 * 19 6 5 35 35 H 1.08999 * 109.52574 * 303.06045 * 20 19 6 36 36 H 1.09002 * 109.52290 * 63.24623 * 20 19 6 37 37 H 1.09006 * 109.47512 * 297.62762 * 21 20 19 38 38 H 1.08994 * 109.48501 * 177.59376 * 21 20 19 39 39 H 1.09005 * 109.47778 * 301.17492 * 23 22 21 40 40 H 1.08993 * 109.49485 * 181.14645 * 23 22 21 41 41 H 1.08997 * 109.52091 * 182.48764 * 24 23 22 42 42 H 1.08995 * 109.51654 * 62.30056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9831 2.6803 0.0925 7 6 3.8168 3.3641 -1.1971 8 6 4.0193 4.8687 -1.0064 9 1 5.0227 5.0546 -0.6232 10 8 3.0547 5.3650 -0.0762 11 6 3.8493 5.5701 -2.3293 12 1 3.6203 4.9997 -3.2174 13 6 3.9873 6.9398 -2.4062 14 7 3.8385 7.5520 -3.5606 15 14 4.3842 7.9262 -0.8703 16 1 3.1213 8.3396 -0.2073 17 1 5.1820 7.0902 0.0624 18 1 5.1647 9.1327 -1.2449 19 6 5.3676 2.7888 0.5711 20 6 6.2800 1.9177 -0.2978 21 6 7.7060 1.9749 0.2561 22 8 7.7046 1.5405 1.6175 23 6 6.9059 2.3461 2.4863 24 6 5.4477 2.3039 2.0219 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9533 0.8406 -0.9214 29 1 3.9588 0.7228 0.8547 30 1 2.8134 3.1783 -1.5802 31 1 4.5526 2.9856 -1.9066 32 1 2.1375 5.2333 -0.3528 33 1 3.9351 8.5155 -3.6146 34 1 5.6924 3.8279 0.5156 35 1 5.9239 0.8877 -0.2812 36 1 6.2718 2.2904 -1.3221 37 1 8.0763 2.9987 0.2016 38 1 8.3512 1.3231 -0.3329 39 1 7.2657 3.3748 2.4610 40 1 6.9746 1.9620 3.5039 41 1 4.8443 2.9528 2.6567 42 1 5.0748 1.2816 2.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354431558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:07 Heat of formation + Delta-G solvation = -167.160027 kcal Electronic energy + Delta-G solvation = -24692.792326 eV Core-core repulsion = 21059.701800 eV Total energy + Delta-G solvation = -3633.090526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.49897 -39.58078 -37.44195 -36.13008 -35.30294 -32.21935 -31.82735 -31.10095 -29.71985 -28.04239 -26.44579 -25.08932 -23.54223 -22.82167 -21.20476 -20.58112 -19.11145 -17.67110 -17.32366 -16.51830 -16.32112 -16.30911 -15.98946 -14.99493 -14.86415 -14.73599 -14.48145 -14.35275 -13.78308 -13.68354 -13.45556 -13.09192 -12.86320 -12.72647 -12.51358 -12.14954 -12.01266 -11.47792 -11.45595 -11.17825 -10.94662 -10.88414 -10.76809 -10.63354 -10.60362 -10.29679 -10.04587 -9.75735 -9.60250 -9.09780 -8.64327 -8.38517 -7.92415 -6.12566 -4.24095 2.42777 2.69285 3.45238 3.50014 3.62484 3.85219 4.13621 4.51164 4.73091 4.81524 4.95760 4.99444 5.08918 5.09987 5.17429 5.18357 5.20670 5.23430 5.28605 5.45533 5.49755 5.58237 5.67026 5.75162 5.83747 5.91287 5.96418 6.01626 6.13982 6.28684 6.31735 6.46559 6.64375 7.14127 7.16836 7.25467 7.46825 7.65243 7.99775 8.30265 8.83631 9.15797 9.51571 10.97943 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.007102 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.080821 B = 3941.561100 C = 5722.832903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.370 6.370 3 C 0.454 3.546 4 O -0.474 6.474 5 C 0.058 3.942 6 N -0.507 5.507 7 C 0.037 3.963 8 C 0.204 3.796 9 H 0.055 0.945 10 O -0.574 6.574 11 C -0.562 4.562 12 H 0.071 0.929 13 C 0.082 3.918 14 N -0.894 5.894 15 Si 0.916 3.084 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.307 1.307 19 C 0.085 3.915 20 C -0.194 4.194 21 C 0.066 3.934 22 O -0.387 6.387 23 C 0.062 3.938 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.363 0.637 33 H 0.265 0.735 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -15.807 9.471 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.288 6.288 3 C 0.294 3.706 4 O -0.358 6.358 5 C -0.071 4.071 6 N -0.230 5.230 7 C -0.089 4.089 8 C 0.146 3.854 9 H 0.073 0.927 10 O -0.380 6.380 11 C -0.600 4.600 12 H 0.089 0.911 13 C -0.122 4.122 14 N -0.531 5.531 15 Si 0.747 3.253 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.236 1.236 19 C -0.024 4.024 20 C -0.233 4.233 21 C -0.011 4.011 22 O -0.306 6.306 23 C -0.016 4.016 24 C -0.186 4.186 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.210 0.790 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.978 -15.094 10.106 18.272 hybrid contribution -0.285 0.286 -0.547 0.679 sum 1.693 -14.809 9.559 17.707 Atomic orbital electron populations 1.23184 0.76685 1.03165 1.02593 1.86470 1.23187 1.34162 1.84947 1.23792 0.92118 0.81296 0.73360 1.90705 1.66521 1.35902 1.42657 1.21602 0.88060 0.93597 1.03840 1.61817 1.20948 1.09245 1.31039 1.22977 1.01195 0.97930 0.86847 1.19792 0.89518 0.87054 0.89047 0.92739 1.86307 1.18346 1.83249 1.50065 1.21529 1.51176 0.93037 0.94267 0.91056 1.24998 0.92957 0.97932 0.96331 1.69959 1.48537 1.09742 1.24892 0.86202 0.78708 0.77837 0.82601 1.20391 1.19415 1.23557 1.21828 0.86461 1.00615 0.93448 1.22970 0.97241 1.01468 1.01632 1.22499 0.95969 1.00119 0.82546 1.87887 1.69233 1.54806 1.18647 1.22588 0.89824 0.95344 0.93802 1.22293 0.97263 1.02242 0.96777 0.88502 0.92019 0.91977 0.90774 0.87179 0.90582 0.94612 0.78994 0.92560 0.88384 0.91027 0.90029 0.92854 0.89010 0.92948 0.88876 0.89756 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -4.82 10.56 -39.25 -0.41 -5.24 16 3 C 0.45 6.93 7.69 36.01 0.28 7.21 16 4 O -0.47 -8.87 14.85 -18.75 -0.28 -9.15 16 5 C 0.06 0.79 4.14 -4.98 -0.02 0.77 16 6 N -0.51 -8.36 3.90 -227.86 -0.89 -9.25 16 7 C 0.04 0.73 4.06 -3.82 -0.02 0.72 16 8 C 0.20 4.79 2.20 -27.88 -0.06 4.73 16 9 H 0.06 1.32 5.41 -51.93 -0.28 1.04 16 10 O -0.57 -13.80 10.90 -35.23 -0.38 -14.19 16 11 C -0.56 -15.67 9.34 -34.44 -0.32 -15.99 16 12 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 13 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 14 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 15 Si 0.92 23.58 26.18 -169.99 -4.45 19.13 16 16 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 18 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16 19 C 0.08 1.24 2.15 -67.54 -0.15 1.10 16 20 C -0.19 -2.45 4.77 -26.60 -0.13 -2.58 16 21 C 0.07 0.77 6.84 37.20 0.25 1.03 16 22 O -0.39 -4.89 10.76 -35.23 -0.38 -5.27 16 23 C 0.06 0.70 6.84 37.21 0.25 0.95 16 24 C -0.15 -1.84 5.46 -26.59 -0.15 -1.98 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.07 0.92 7.29 -51.93 -0.38 0.54 16 29 H 0.11 1.27 5.83 -51.93 -0.30 0.97 16 30 H 0.08 1.60 6.64 -51.93 -0.35 1.26 16 31 H 0.04 0.68 6.52 -51.93 -0.34 0.34 16 32 H 0.36 8.34 9.04 45.56 0.41 8.76 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.10 1.68 6.07 -51.93 -0.32 1.37 16 35 H 0.07 0.83 6.58 -51.93 -0.34 0.49 16 36 H 0.08 1.10 6.76 -51.93 -0.35 0.75 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.79 6.18 -51.93 -0.32 0.47 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -33.21 329.13 -5.67 -38.88 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.53 Total: 7.01 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.92 Total: -0.30 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.11 Total: -35.83 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.46 Total: -33.85 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.45 Total: 19.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.21 -5.67 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354431558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.282 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds