Wall clock time and date at job start Tue Mar 31 2020 03:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35485 * 126.98262 * 2 1 4 4 N 1.30524 * 107.30675 * 180.02562 * 3 2 1 5 5 N 1.28592 * 109.67571 * 359.97438 * 4 3 2 6 6 C 1.30523 * 109.67062 * 359.97438 * 5 4 3 7 7 S 1.76200 * 126.34813 * 180.02562 * 6 5 4 8 8 O 1.42095 * 106.40482 * 83.51191 * 7 6 5 9 9 O 1.42103 * 106.40224 * 216.43727 * 7 6 5 10 10 N 1.65603 * 107.21691 * 329.97376 * 7 6 5 11 11 C 1.47074 * 136.05704 * 269.63407 * 10 7 6 12 12 C 1.53752 * 87.88869 * 152.96125 * 11 10 7 13 13 O 1.42901 * 114.39342 * 272.67568 * 12 11 10 14 14 C 1.50689 * 114.26877 * 139.79002 * 12 11 10 15 15 H 1.08001 * 120.00027 * 266.47380 * 14 12 11 16 16 C 1.37879 * 120.00170 * 86.47531 * 14 12 11 17 17 N 1.31511 * 119.99736 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00315 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46992 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47209 * 119.99597 * 18 16 14 21 21 H 1.48497 * 109.47052 * 239.99947 * 18 16 14 22 22 C 1.47065 * 136.05655 * 89.99738 * 10 7 6 23 23 H 1.09005 * 109.46655 * 89.97742 * 1 2 3 24 24 H 1.08992 * 109.47618 * 209.97672 * 1 2 3 25 25 H 1.09003 * 109.47029 * 329.98391 * 1 2 3 26 26 H 1.07998 * 126.34925 * 359.97438 * 3 2 1 27 27 H 1.08999 * 113.46204 * 267.69239 * 11 10 7 28 28 H 1.08996 * 113.46643 * 38.12553 * 11 10 7 29 29 H 0.96701 * 114.00163 * 273.58800 * 13 12 11 30 30 H 0.97005 * 119.99987 * 180.02562 * 17 16 14 31 31 H 1.08996 * 113.46760 * 321.86551 * 22 10 7 32 32 H 1.09000 * 113.46581 * 92.30852 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6428 -0.0006 5 7 3.5091 -0.6431 -0.0004 6 6 2.2800 -1.0825 0.0009 7 16 1.7743 -2.7703 0.0023 8 8 1.8078 -3.1982 1.3568 9 8 0.6080 -2.8405 -0.8064 10 7 2.9450 -3.6334 -0.7897 11 6 3.2002 -4.0447 -2.1785 12 6 4.6987 -4.0712 -1.8353 13 8 5.3636 -2.8167 -1.9973 14 6 5.4524 -5.2273 -2.4404 15 1 5.5885 -6.1379 -1.8759 16 6 5.9682 -5.1225 -3.7148 17 7 5.8020 -4.0138 -4.4023 18 14 6.9019 -6.5559 -4.4653 19 1 6.9480 -7.6790 -3.4949 20 1 6.2140 -7.0006 -5.7040 21 1 8.2854 -6.1278 -4.7938 22 6 4.1834 -4.3313 -0.4129 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8901 0.5134 25 1 -0.3633 0.8899 0.5141 26 1 1.9703 2.1169 -0.0004 27 1 2.7934 -5.0261 -2.4222 28 1 2.9348 -3.2837 -2.9123 29 1 5.6869 -2.6559 -2.8943 30 1 6.1646 -3.9402 -5.2990 31 1 4.7557 -3.8144 0.3574 32 1 4.0358 -5.3882 -0.1912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463536849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:22 Heat of formation + Delta-G solvation = 11.209807 kcal Electronic energy + Delta-G solvation = -21600.096152 eV Core-core repulsion = 18112.693844 eV Total energy + Delta-G solvation = -3487.402308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.14107 -38.63845 -37.11413 -35.90643 -35.16512 -33.90467 -32.07283 -30.86062 -27.94956 -27.85829 -25.08715 -24.75462 -23.20551 -22.55924 -19.77816 -18.69874 -18.00840 -17.36506 -16.82054 -16.50984 -16.26443 -15.66946 -15.17947 -15.01953 -14.24547 -13.76718 -13.66204 -13.48712 -13.18062 -13.09488 -12.12244 -12.08590 -12.07027 -11.99448 -11.77281 -11.45308 -11.41348 -11.04981 -10.78965 -10.54625 -10.42349 -10.38164 -10.15811 -9.78865 -9.26506 -8.76584 -8.59419 -8.02243 -6.32222 -4.42232 0.36842 1.32411 2.26458 2.71847 3.03524 3.18802 3.28378 3.32016 3.67854 4.23508 4.25659 4.35681 4.53051 4.76144 4.92226 5.01891 5.08108 5.38414 5.49946 5.83583 6.06289 6.11726 6.30304 6.42202 6.50576 6.64310 6.74977 7.05189 7.49631 7.72691 7.91135 8.47229 8.61551 9.28645 9.64687 10.73925 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.005438 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.921702 B = 5147.878323 C = 5599.637382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.432 5.432 3 C 0.173 3.827 4 N -0.293 5.293 5 N -0.167 5.167 6 C -0.372 4.372 7 S 2.744 3.256 8 O -0.945 6.945 9 O -0.952 6.952 10 N -1.020 6.020 11 C 0.104 3.896 12 C 0.242 3.758 13 O -0.560 6.560 14 C -0.531 4.531 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.135 3.865 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.227 0.773 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.391 0.609 30 H 0.272 0.728 31 H 0.072 0.928 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 6.560 5.368 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.122 5.122 3 C -0.114 4.114 4 N -0.137 5.137 5 N -0.012 5.012 6 C -0.715 4.715 7 S 2.825 3.175 8 O -0.934 6.934 9 O -0.941 6.941 10 N -0.864 5.864 11 C -0.021 4.021 12 C 0.197 3.803 13 O -0.372 6.372 14 C -0.570 4.570 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.010 3.990 23 H 0.118 0.882 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.243 0.757 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.131 6.615 6.329 13.655 hybrid contribution -0.604 0.224 -1.276 1.430 sum -10.735 6.840 5.053 13.695 Atomic orbital electron populations 1.22434 0.74419 1.05691 1.05871 1.46110 1.09290 1.05360 1.51420 1.26968 0.87240 0.95391 1.01808 1.74301 1.17884 1.03445 1.18062 1.74407 1.15339 1.03008 1.08422 1.39165 0.95113 1.18054 1.19144 1.00828 0.72206 0.71322 0.73171 1.93599 1.86369 1.78873 1.34547 1.93578 1.44628 1.85827 1.70100 1.59315 1.41215 1.62721 1.23144 1.23884 1.00860 0.98514 0.78806 1.19723 0.86843 0.84467 0.89223 1.86124 1.76552 1.36508 1.38043 1.21547 1.35325 1.00125 1.00008 0.90818 1.25083 0.94962 0.96477 0.96600 1.69295 1.45780 1.26286 1.12472 0.86285 0.79413 0.81833 0.78966 1.19414 1.20819 1.20731 1.22962 0.80061 0.95502 1.00450 0.88187 0.88958 0.87886 0.75662 0.89633 0.91942 0.75324 0.91735 0.90971 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 10.45 59.85 0.63 1.14 16 2 N -0.43 -6.03 3.15 -126.41 -0.40 -6.43 16 3 C 0.17 2.29 12.74 -89.95 -1.15 1.14 16 4 N -0.29 -5.42 12.21 29.69 0.36 -5.06 16 5 N -0.17 -3.48 12.21 30.35 0.37 -3.11 16 6 C -0.37 -6.84 8.01 -89.94 -0.72 -7.56 16 7 S 2.74 51.12 6.06 -107.50 -0.65 50.47 16 8 O -0.94 -18.84 18.02 -57.17 -1.03 -19.87 16 9 O -0.95 -17.57 16.81 -57.17 -0.96 -18.53 16 10 N -1.02 -20.83 4.23 -124.98 -0.53 -21.36 16 11 C 0.10 2.27 8.17 -8.36 -0.07 2.20 16 12 C 0.24 5.74 1.58 -91.13 -0.14 5.60 16 13 O -0.56 -14.48 13.55 -35.23 -0.48 -14.96 16 14 C -0.53 -13.14 8.70 -34.44 -0.30 -13.44 16 15 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 17 N -0.90 -22.99 11.01 55.43 0.61 -22.38 16 18 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 22 C 0.13 2.81 8.14 -8.50 -0.07 2.74 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 0.84 7.36 -51.93 -0.38 0.45 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.23 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.39 10.41 6.33 45.56 0.29 10.69 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -32.82 297.94 -7.75 -40.57 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.59 Total: 8.25 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.92 Total: -6.51 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.42 Total: -58.34 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -2.47 Total: -53.36 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.65 Total: 50.47 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.82 -7.75 -40.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463536849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.777 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds