Wall clock time and date at job start Tue Mar 31 2020 03:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35485 * 126.98262 * 2 1 4 4 N 1.30524 * 107.30675 * 180.02562 * 3 2 1 5 5 N 1.28592 * 109.67571 * 359.97438 * 4 3 2 6 6 C 1.30523 * 109.67062 * 359.97438 * 5 4 3 7 7 S 1.76200 * 126.34813 * 180.02562 * 6 5 4 8 8 O 1.42095 * 106.40482 * 83.51191 * 7 6 5 9 9 O 1.42103 * 106.40224 * 216.43727 * 7 6 5 10 10 N 1.65603 * 107.21691 * 329.97376 * 7 6 5 11 11 C 1.47074 * 136.05704 * 269.63407 * 10 7 6 12 12 C 1.53752 * 87.88869 * 152.96125 * 11 10 7 13 13 O 1.42901 * 114.39342 * 272.67568 * 12 11 10 14 14 C 1.50689 * 114.26877 * 139.79002 * 12 11 10 15 15 H 1.08001 * 120.00027 * 266.47380 * 14 12 11 16 16 C 1.37879 * 120.00170 * 86.47531 * 14 12 11 17 17 N 1.31511 * 119.99736 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00315 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46992 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47209 * 119.99597 * 18 16 14 21 21 H 1.48497 * 109.47052 * 239.99947 * 18 16 14 22 22 C 1.47065 * 136.05655 * 89.99738 * 10 7 6 23 23 H 1.09005 * 109.46655 * 89.97742 * 1 2 3 24 24 H 1.08992 * 109.47618 * 209.97672 * 1 2 3 25 25 H 1.09003 * 109.47029 * 329.98391 * 1 2 3 26 26 H 1.07998 * 126.34925 * 359.97438 * 3 2 1 27 27 H 1.08999 * 113.46204 * 267.69239 * 11 10 7 28 28 H 1.08996 * 113.46643 * 38.12553 * 11 10 7 29 29 H 0.96701 * 114.00163 * 273.58800 * 13 12 11 30 30 H 0.97005 * 119.99987 * 180.02562 * 17 16 14 31 31 H 1.08996 * 113.46760 * 321.86551 * 22 10 7 32 32 H 1.09000 * 113.46581 * 92.30852 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6428 -0.0006 5 7 3.5091 -0.6431 -0.0004 6 6 2.2800 -1.0825 0.0009 7 16 1.7743 -2.7703 0.0023 8 8 1.8078 -3.1982 1.3568 9 8 0.6080 -2.8405 -0.8064 10 7 2.9450 -3.6334 -0.7897 11 6 3.2002 -4.0447 -2.1785 12 6 4.6987 -4.0712 -1.8353 13 8 5.3636 -2.8167 -1.9973 14 6 5.4524 -5.2273 -2.4404 15 1 5.5885 -6.1379 -1.8759 16 6 5.9682 -5.1225 -3.7148 17 7 5.8020 -4.0138 -4.4023 18 14 6.9019 -6.5559 -4.4653 19 1 6.9480 -7.6790 -3.4949 20 1 6.2140 -7.0006 -5.7040 21 1 8.2854 -6.1278 -4.7938 22 6 4.1834 -4.3313 -0.4129 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8901 0.5134 25 1 -0.3633 0.8899 0.5141 26 1 1.9703 2.1169 -0.0004 27 1 2.7934 -5.0261 -2.4222 28 1 2.9348 -3.2837 -2.9123 29 1 5.6869 -2.6559 -2.8943 30 1 6.1646 -3.9402 -5.2990 31 1 4.7557 -3.8144 0.3574 32 1 4.0358 -5.3882 -0.1912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463536849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:20 Heat of formation + Delta-G solvation = -15.589309 kcal Electronic energy + Delta-G solvation = -21601.258249 eV Core-core repulsion = 18112.693844 eV Total energy + Delta-G solvation = -3488.564404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.34800 -40.37202 -38.62213 -37.40389 -36.29295 -35.76693 -34.00286 -32.12280 -29.68617 -28.76233 -26.78167 -26.55223 -24.50780 -23.69009 -21.48339 -20.14629 -19.56265 -18.93468 -18.36134 -17.84862 -17.45900 -17.19589 -16.84656 -16.24041 -15.97698 -15.48769 -14.96233 -14.81089 -14.54999 -14.19228 -13.82978 -13.62881 -13.53219 -13.48594 -13.33686 -13.26924 -12.78939 -12.74033 -12.52840 -12.15939 -12.04404 -11.78352 -11.44308 -11.10770 -11.03479 -10.60651 -10.33308 -9.83922 -8.19440 -6.35938 -1.09558 0.12595 1.24009 1.46216 1.49444 1.53727 1.58907 1.64768 2.26511 2.45315 2.96402 3.07680 3.40772 3.61605 3.70261 3.88695 4.15453 4.29738 4.35194 4.43651 4.49838 4.66237 4.70063 4.72205 4.99418 4.99691 5.28358 5.54783 5.70466 5.84396 6.04214 6.71862 7.22631 7.37630 7.63060 8.86250 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.005438 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.921702 B = 5147.878323 C = 5599.637382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.427 5.427 3 C 0.203 3.797 4 N -0.344 5.344 5 N -0.213 5.213 6 C -0.396 4.396 7 S 2.768 3.232 8 O -0.959 6.959 9 O -0.951 6.951 10 N -1.026 6.026 11 C 0.111 3.889 12 C 0.217 3.783 13 O -0.574 6.574 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.028 3.972 17 N -0.922 5.922 18 Si 0.970 3.030 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.285 1.285 22 C 0.137 3.863 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.290 0.710 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.383 0.617 30 H 0.273 0.727 31 H 0.068 0.932 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 7.117 5.682 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.116 5.116 3 C -0.085 4.085 4 N -0.187 5.187 5 N -0.059 5.059 6 C -0.742 4.742 7 S 2.850 3.150 8 O -0.949 6.949 9 O -0.941 6.941 10 N -0.868 5.868 11 C -0.014 4.014 12 C 0.174 3.826 13 O -0.385 6.385 14 C -0.585 4.585 15 H 0.098 0.902 16 C -0.172 4.172 17 N -0.564 5.564 18 Si 0.795 3.205 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.211 1.211 22 C 0.013 3.987 23 H 0.130 0.870 24 H 0.105 0.895 25 H 0.173 0.827 26 H 0.305 0.695 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.237 0.763 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.695 7.139 6.657 15.233 hybrid contribution -0.228 0.203 -1.331 1.366 sum -11.922 7.343 5.325 14.981 Atomic orbital electron populations 1.22991 0.71348 1.08152 1.07465 1.46439 1.11018 1.04149 1.49971 1.28068 0.85571 0.97262 0.97587 1.74167 1.21180 1.02771 1.20611 1.74312 1.17042 1.04549 1.09973 1.38754 0.95607 1.18870 1.20922 1.00011 0.71496 0.71047 0.72481 1.93577 1.86503 1.79593 1.35182 1.93569 1.44450 1.86059 1.70000 1.59279 1.41361 1.63719 1.22469 1.23682 0.99670 0.98876 0.79221 1.20040 0.87708 0.83504 0.91374 1.86122 1.77057 1.37897 1.37445 1.21835 1.35707 1.00579 1.00343 0.90213 1.25797 0.95735 0.98596 0.97042 1.69380 1.46551 1.27732 1.12699 0.85322 0.77754 0.79212 0.78167 1.18677 1.20593 1.21145 1.22987 0.80109 0.96965 0.98675 0.87005 0.89461 0.82655 0.69495 0.88229 0.93178 0.76270 0.91685 0.91373 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.45 127.77 1.33 1.91 16 2 N -0.43 -10.88 3.15 -553.84 -1.74 -12.62 16 3 C 0.20 4.75 12.74 180.11 2.30 7.04 16 4 N -0.34 -12.48 12.21 -59.99 -0.73 -13.21 16 5 N -0.21 -8.95 12.21 -57.90 -0.71 -9.66 16 6 C -0.40 -14.32 8.01 180.11 1.44 -12.87 16 7 S 2.77 101.76 6.06 -56.49 -0.34 101.42 16 8 O -0.96 -37.79 18.02 -128.00 -2.31 -40.10 16 9 O -0.95 -34.11 16.81 -128.00 -2.15 -36.26 16 10 N -1.03 -41.90 4.23 -549.81 -2.33 -44.22 16 11 C 0.11 4.84 8.17 83.27 0.68 5.52 16 12 C 0.22 10.46 1.58 -11.12 -0.02 10.44 16 13 O -0.57 -30.66 13.55 -148.98 -2.02 -32.67 16 14 C -0.55 -27.05 8.70 25.60 0.22 -26.83 16 15 H 0.08 3.75 7.81 -2.91 -0.02 3.73 16 16 C 0.03 1.39 5.39 84.66 0.46 1.85 16 17 N -0.92 -47.93 11.01 21.45 0.24 -47.69 16 18 Si 0.97 39.78 29.54 68.60 2.03 41.81 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.14 5.72 8.14 83.19 0.68 6.40 16 23 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.09 1.36 7.36 -2.39 -0.02 1.34 16 25 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.29 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.38 21.20 6.33 -74.06 -0.47 20.73 16 30 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.12 4.15 8.10 -2.39 -0.02 4.13 16 Total: -1.00 -72.92 297.94 -2.27 -75.19 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.70 Total: 24.57 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 7.09 Total: -6.55 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -5.27 Total: -127.40 kcal Atomic # 8 Polarization: -102.55 SS G_CDS: -6.48 Total: -109.03 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: 101.76 SS G_CDS: -0.34 Total: 101.42 kcal Total: -72.92 -2.27 -75.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463536849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds