Wall clock time and date at job start Tue Mar 31 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38848 * 126.98602 * 260.23835 * 3 2 1 5 5 C 1.48201 * 126.35385 * 359.97438 * 4 3 2 6 6 N 1.34131 * 126.69343 * 359.68242 * 5 4 3 7 7 N 1.28982 * 107.26337 * 179.89736 * 6 5 4 8 8 N 1.28721 * 108.96781 * 0.37574 * 7 6 5 9 9 H 0.97004 * 125.32702 * 179.76264 * 8 7 6 10 10 N 1.28868 * 109.34604 * 359.76146 * 8 7 6 11 11 N 1.34259 * 107.28710 * 179.83825 * 4 3 2 12 12 C 1.30537 * 109.68212 * 0.44031 * 11 4 3 13 13 N 1.34725 * 109.68944 * 359.72209 * 12 11 4 14 14 C 1.46497 * 126.34363 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47105 * 264.99992 * 14 13 12 16 16 O 1.21294 * 120.00176 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00061 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00289 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99792 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00550 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00439 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46645 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46914 * 120.00264 * 22 20 18 25 25 H 1.48494 * 109.47247 * 240.00130 * 22 20 18 26 26 H 1.08003 * 125.15742 * 179.72489 * 12 11 4 27 27 H 1.09002 * 109.46933 * 24.99823 * 14 13 12 28 28 H 1.09003 * 109.47444 * 144.99818 * 14 13 12 29 29 H 0.97007 * 120.00152 * 359.97438 * 17 15 14 30 30 H 0.96995 * 119.99958 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4032 0.1891 1.0930 5 6 2.9782 0.4301 2.4922 6 7 1.7181 0.5139 2.9439 7 7 1.7803 0.7282 4.2143 8 7 3.0164 0.7888 4.5683 9 1 3.3342 0.9446 5.4715 10 7 3.7656 0.6100 3.5352 11 7 4.6673 0.1093 0.6476 12 6 4.6670 -0.1049 -0.6400 13 7 3.3985 -0.1799 -1.0875 14 6 2.9783 -0.4109 -2.4718 15 6 2.7152 0.9119 -3.1442 16 8 2.8636 1.9458 -2.5277 17 7 2.3151 0.9460 -4.4307 18 6 2.0752 2.1493 -5.0424 19 1 2.2073 3.0700 -4.4933 20 6 1.6632 2.1845 -6.3689 21 7 1.5029 1.0643 -7.0371 22 14 1.3370 3.8241 -7.2025 23 1 1.5895 4.9271 -6.2408 24 1 2.2388 3.9723 -8.3730 25 1 -0.0758 3.8762 -7.6565 26 1 5.5499 -0.2066 -1.2537 27 1 3.7666 -0.9402 -3.0071 28 1 2.0678 -1.0101 -2.4800 29 1 2.1968 0.1191 -4.9240 30 1 1.2150 1.0889 -7.9630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:26 Heat of formation + Delta-G solvation = 189.482961 kcal Electronic energy + Delta-G solvation = -21210.387114 eV Core-core repulsion = 17659.856862 eV Total energy + Delta-G solvation = -3550.530253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.48055 -42.21379 -38.43310 -36.28490 -34.78929 -34.32880 -33.96585 -32.91933 -31.52410 -30.16497 -28.15476 -25.12984 -24.71118 -24.36757 -22.64836 -21.02890 -20.18913 -19.33279 -18.44805 -17.75676 -17.21073 -16.73904 -16.51013 -15.14341 -14.94149 -14.63009 -14.53961 -14.27119 -13.88654 -13.82751 -13.04677 -13.01774 -12.75791 -12.57513 -12.31608 -12.08023 -11.74832 -11.47370 -11.21947 -11.17290 -11.16602 -10.49821 -10.42389 -10.29194 -9.90270 -9.76800 -8.74767 -8.41252 -8.24237 -6.64688 -4.06628 0.74651 1.15695 1.98466 2.09809 2.28507 2.94498 3.00961 3.01633 3.17265 3.24144 3.48151 3.50860 3.61308 3.86173 4.00207 4.07816 4.56458 4.75756 4.76842 5.09790 5.12301 5.16877 5.33069 5.44596 5.82534 5.96211 6.11418 6.30609 6.84697 7.35205 7.58964 7.70395 7.77098 8.11903 8.28756 8.92083 9.20693 9.68558 10.51741 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003601 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.972929 B = 7773.168038 C = 8016.451067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C 0.283 3.717 3 C 0.099 3.901 4 C 0.135 3.865 5 C 0.261 3.739 6 N -0.260 5.260 7 N -0.051 5.051 8 N -0.230 5.230 9 H 0.475 0.525 10 N -0.268 5.268 11 N -0.461 5.461 12 C 0.241 3.759 13 N -0.401 5.401 14 C 0.083 3.917 15 C 0.411 3.589 16 O -0.576 6.576 17 N -0.543 5.543 18 C -0.304 4.304 19 H 0.107 0.893 20 C 0.029 3.971 21 N -0.892 5.892 22 Si 0.932 3.068 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.225 0.775 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.395 0.605 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -6.362 13.721 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.034 4.034 3 C -0.025 4.025 4 C -0.003 4.003 5 C -0.020 4.020 6 N -0.135 5.135 7 N -0.046 5.046 8 N -0.077 5.077 9 H 0.329 0.671 10 N -0.120 5.120 11 N -0.178 5.178 12 C -0.043 4.043 13 N -0.080 5.080 14 C -0.043 4.043 15 C 0.195 3.805 16 O -0.461 6.461 17 N -0.179 5.179 18 C -0.433 4.433 19 H 0.125 0.875 20 C -0.175 4.175 21 N -0.532 5.532 22 Si 0.759 3.241 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.205 1.205 26 H 0.241 0.759 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.080 -5.571 14.669 16.493 hybrid contribution 0.084 0.293 -1.259 1.296 sum 5.164 -5.277 13.409 15.308 Atomic orbital electron populations 1.81213 1.10731 1.08078 1.05228 1.23632 0.90203 0.94395 0.95149 1.15954 0.84464 1.14153 0.87881 1.16854 0.89000 1.08243 0.86243 1.22061 0.85717 1.01792 0.92456 1.76202 1.19936 1.17082 1.00253 1.78922 1.03047 1.14841 1.07775 1.47783 1.02775 1.45169 1.11936 0.67062 1.75132 1.22754 1.19986 0.94148 1.70147 1.19470 1.19169 1.09030 1.25037 0.87056 1.01256 0.90909 1.44934 1.06636 1.49314 1.07090 1.21985 1.04175 0.99736 0.78434 1.19667 0.87308 0.89455 0.84102 1.90640 1.57685 1.33550 1.64232 1.41780 1.57111 1.10034 1.08955 1.19790 1.42884 0.86177 0.94484 0.87522 1.25330 0.96503 0.99172 0.96469 1.69602 1.45711 1.26557 1.11371 0.85748 0.78122 0.81192 0.79054 1.19021 1.20458 1.20478 0.75911 0.85594 0.87098 0.77130 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -7.21 18.54 41.83 0.78 -6.44 16 2 C 0.28 5.09 14.57 -22.47 -0.33 4.76 16 3 C 0.10 1.63 6.85 -82.93 -0.57 1.06 16 4 C 0.14 2.17 7.15 -82.49 -0.59 1.58 16 5 C 0.26 4.04 8.18 -156.26 -1.28 2.76 16 6 N -0.26 -4.12 11.73 32.12 0.38 -3.74 16 7 N -0.05 -0.65 13.47 60.35 0.81 0.17 16 8 N -0.23 -2.23 7.90 60.35 0.48 -1.75 16 9 H 0.48 1.96 8.96 -340.35 -3.05 -1.09 16 10 N -0.27 -3.51 12.41 32.14 0.40 -3.11 16 11 N -0.46 -6.88 11.23 -10.71 -0.12 -7.00 16 12 C 0.24 3.06 12.47 -90.63 -1.13 1.93 16 13 N -0.40 -5.85 2.26 -116.50 -0.26 -6.11 16 14 C 0.08 1.15 6.41 -5.20 -0.03 1.12 16 15 C 0.41 8.51 7.85 -10.99 -0.09 8.42 16 16 O -0.58 -14.47 16.01 5.54 0.09 -14.38 16 17 N -0.54 -12.31 5.29 -10.96 -0.06 -12.37 16 18 C -0.30 -7.90 9.68 -14.94 -0.14 -8.04 16 19 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 20 C 0.03 0.72 5.50 -17.47 -0.10 0.62 16 21 N -0.89 -22.58 13.05 55.50 0.72 -21.86 16 22 Si 0.93 20.01 29.55 -169.99 -5.02 14.98 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H 0.22 1.79 8.06 -52.48 -0.42 1.36 16 27 H 0.13 1.19 8.13 -51.93 -0.42 0.77 16 28 H 0.11 1.39 8.02 -51.93 -0.42 0.97 16 29 H 0.39 8.32 7.90 -40.82 -0.32 8.00 16 30 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -34.70 297.93 -5.72 -40.42 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.14 Total: 2.49 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -4.25 Total: 14.22 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 3.12 Total: -62.22 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.70 -5.72 -40.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.903 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds