Wall clock time and date at job start Tue Mar 31 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38848 * 126.98602 * 260.23835 * 3 2 1 5 5 C 1.48201 * 126.35385 * 359.97438 * 4 3 2 6 6 N 1.34131 * 126.69343 * 359.68242 * 5 4 3 7 7 N 1.28982 * 107.26337 * 179.89736 * 6 5 4 8 8 N 1.28721 * 108.96781 * 0.37574 * 7 6 5 9 9 H 0.97004 * 125.32702 * 179.76264 * 8 7 6 10 10 N 1.28868 * 109.34604 * 359.76146 * 8 7 6 11 11 N 1.34259 * 107.28710 * 179.83825 * 4 3 2 12 12 C 1.30537 * 109.68212 * 0.44031 * 11 4 3 13 13 N 1.34725 * 109.68944 * 359.72209 * 12 11 4 14 14 C 1.46497 * 126.34363 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47105 * 264.99992 * 14 13 12 16 16 O 1.21294 * 120.00176 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00061 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00289 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99792 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00550 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00439 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46645 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46914 * 120.00264 * 22 20 18 25 25 H 1.48494 * 109.47247 * 240.00130 * 22 20 18 26 26 H 1.08003 * 125.15742 * 179.72489 * 12 11 4 27 27 H 1.09002 * 109.46933 * 24.99823 * 14 13 12 28 28 H 1.09003 * 109.47444 * 144.99818 * 14 13 12 29 29 H 0.97007 * 120.00152 * 359.97438 * 17 15 14 30 30 H 0.96995 * 119.99958 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4032 0.1891 1.0930 5 6 2.9782 0.4301 2.4922 6 7 1.7181 0.5139 2.9439 7 7 1.7803 0.7282 4.2143 8 7 3.0164 0.7888 4.5683 9 1 3.3342 0.9446 5.4715 10 7 3.7656 0.6100 3.5352 11 7 4.6673 0.1093 0.6476 12 6 4.6670 -0.1049 -0.6400 13 7 3.3985 -0.1799 -1.0875 14 6 2.9783 -0.4109 -2.4718 15 6 2.7152 0.9119 -3.1442 16 8 2.8636 1.9458 -2.5277 17 7 2.3151 0.9460 -4.4307 18 6 2.0752 2.1493 -5.0424 19 1 2.2073 3.0700 -4.4933 20 6 1.6632 2.1845 -6.3689 21 7 1.5029 1.0643 -7.0371 22 14 1.3370 3.8241 -7.2025 23 1 1.5895 4.9271 -6.2408 24 1 2.2388 3.9723 -8.3730 25 1 -0.0758 3.8762 -7.6565 26 1 5.5499 -0.2066 -1.2537 27 1 3.7666 -0.9402 -3.0071 28 1 2.0678 -1.0101 -2.4800 29 1 2.1968 0.1191 -4.9240 30 1 1.2150 1.0889 -7.9630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678597.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:26 Heat of formation + Delta-G solvation = 163.254210 kcal Electronic energy + Delta-G solvation = -21211.524478 eV Core-core repulsion = 17659.856862 eV Total energy + Delta-G solvation = -3551.667616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.51584 -43.33784 -40.12342 -37.67953 -36.24612 -35.66959 -35.22736 -34.03226 -33.35304 -31.32308 -29.46668 -26.75553 -25.79358 -25.60077 -23.77938 -22.22047 -21.62297 -20.49064 -20.07435 -19.08664 -18.33328 -18.13374 -17.66872 -16.76631 -16.25917 -16.08796 -15.81571 -15.64943 -15.44364 -14.91155 -14.56419 -14.37541 -14.23561 -13.93301 -13.56762 -13.39389 -13.34376 -12.90900 -12.54264 -12.46324 -12.25599 -12.24434 -12.15107 -11.58916 -11.43119 -11.13653 -10.37053 -10.09506 -9.59413 -8.53254 -6.01732 -0.42100 0.10773 0.87173 1.01989 1.32613 1.35445 1.42229 1.54111 1.68389 1.86230 1.88573 2.26303 2.32168 2.43951 2.63175 2.95703 3.08977 3.13585 3.80335 3.84002 3.97605 4.15726 4.22371 4.25980 4.37813 4.83736 4.96101 5.37771 5.60189 5.79185 5.93092 6.25988 6.48348 6.59148 7.04997 7.06537 7.42418 7.96640 8.63028 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.029070 B = 0.003601 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.972929 B = 7773.168038 C = 8016.451067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.295 3.705 3 C 0.067 3.933 4 C 0.138 3.862 5 C 0.240 3.760 6 N -0.294 5.294 7 N -0.052 5.052 8 N -0.193 5.193 9 H 0.497 0.503 10 N -0.265 5.265 11 N -0.479 5.479 12 C 0.264 3.736 13 N -0.407 5.407 14 C 0.095 3.905 15 C 0.416 3.584 16 O -0.623 6.623 17 N -0.555 5.555 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.910 5.910 22 Si 0.986 3.014 23 H -0.276 1.276 24 H -0.267 1.267 25 H -0.274 1.274 26 H 0.273 0.727 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.402 0.598 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -7.209 13.921 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.021 4.021 3 C -0.056 4.056 4 C -0.001 4.001 5 C -0.041 4.041 6 N -0.167 5.167 7 N -0.046 5.046 8 N -0.046 5.046 9 H 0.357 0.643 10 N -0.119 5.119 11 N -0.197 5.197 12 C -0.020 4.020 13 N -0.085 5.085 14 C -0.030 4.030 15 C 0.202 3.798 16 O -0.510 6.510 17 N -0.191 5.191 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.550 5.550 22 Si 0.810 3.190 23 H -0.201 1.201 24 H -0.192 1.192 25 H -0.200 1.200 26 H 0.289 0.711 27 H 0.202 0.798 28 H 0.147 0.853 29 H 0.237 0.763 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.681 -6.443 14.893 17.548 hybrid contribution -0.291 0.572 -1.112 1.284 sum 6.390 -5.871 13.781 16.285 Atomic orbital electron populations 1.81197 1.11733 1.09760 1.06407 1.23929 0.90678 0.93350 0.94135 1.16008 0.83902 1.16561 0.89079 1.17075 0.89450 1.07034 0.86496 1.22152 0.85939 1.03065 0.92949 1.76195 1.20684 1.18462 1.01383 1.78852 1.03905 1.14950 1.06927 1.47836 1.01790 1.42441 1.12485 0.64254 1.75080 1.22815 1.19682 0.94291 1.70201 1.18779 1.20398 1.10285 1.26120 0.87555 0.97647 0.90628 1.45035 1.06894 1.49879 1.06738 1.22044 1.07392 0.95607 0.77927 1.20795 0.84357 0.91519 0.83152 1.90619 1.58782 1.36429 1.65155 1.41786 1.58122 1.09297 1.09944 1.19627 1.44811 0.86666 0.95201 0.90431 1.25938 0.96059 1.01947 0.96542 1.69636 1.46051 1.27573 1.11727 0.84962 0.78260 0.77631 0.78098 1.20102 1.19175 1.19963 0.71137 0.79830 0.85316 0.76258 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -16.26 18.54 19.00 0.35 -15.91 16 2 C 0.30 10.72 14.57 88.33 1.29 12.01 16 3 C 0.07 2.16 6.85 39.56 0.27 2.43 16 4 C 0.14 4.32 7.15 41.57 0.30 4.61 16 5 C 0.24 7.28 8.18 137.24 1.12 8.41 16 6 N -0.29 -9.26 11.73 -52.28 -0.61 -9.88 16 7 N -0.05 -1.27 13.47 37.02 0.50 -0.77 16 8 N -0.19 -3.41 7.90 37.02 0.29 -3.11 16 9 H 0.50 2.95 8.96 -347.52 -3.12 -0.16 16 10 N -0.27 -6.56 12.41 -52.23 -0.65 -7.20 16 11 N -0.48 -13.28 11.23 -187.81 -2.11 -15.38 16 12 C 0.26 5.81 12.47 180.35 2.25 8.06 16 13 N -0.41 -10.88 2.26 -522.50 -1.18 -12.06 16 14 C 0.10 2.37 6.41 85.63 0.55 2.92 16 15 C 0.42 16.83 7.85 87.66 0.69 17.51 16 16 O -0.62 -31.40 16.01 -3.07 -0.05 -31.45 16 17 N -0.55 -24.98 5.29 -306.98 -1.62 -26.61 16 18 C -0.33 -17.58 9.68 84.04 0.81 -16.77 16 19 H 0.08 4.47 7.16 -2.91 -0.02 4.45 16 20 C 0.00 -0.17 5.50 84.92 0.47 0.29 16 21 N -0.91 -45.55 13.05 21.66 0.28 -45.26 16 22 Si 0.99 41.02 29.55 68.60 2.03 43.05 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H 0.27 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.18 2.50 8.13 -2.39 -0.02 2.48 16 28 H 0.13 2.86 8.02 -2.39 -0.02 2.84 16 29 H 0.40 16.62 7.90 -92.70 -0.73 15.89 16 30 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -78.06 297.93 2.40 -75.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.58 Total: 9.45 kcal Atomic # 6 Polarization: 31.73 SS G_CDS: 7.75 Total: 39.48 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -4.75 Total: -136.18 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -78.06 2.40 -75.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678597.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.914 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds