Wall clock time and date at job start Tue Mar 31 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47224 * 57.71349 * 3 2 1 5 5 C 1.36968 * 120.00134 * 264.97383 * 4 3 2 6 6 H 1.07993 * 119.99651 * 193.76482 * 5 4 3 7 7 C 1.38974 * 119.99808 * 13.75932 * 5 4 3 8 8 N 1.31419 * 120.00262 * 24.44217 * 7 5 4 9 9 Si 1.86799 * 120.00058 * 204.43657 * 7 5 4 10 10 H 1.48504 * 109.46998 * 60.00156 * 9 7 5 11 11 H 1.48496 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 300.00347 * 9 7 5 13 13 C 1.34779 * 119.99871 * 84.97367 * 4 3 2 14 14 O 1.21633 * 119.99611 * 185.23002 * 13 4 3 15 15 C 1.47342 * 119.99870 * 5.22899 * 13 4 3 16 16 C 1.36651 * 127.11630 * 343.05802 * 15 13 4 17 17 O 1.33666 * 108.63644 * 179.97438 * 16 15 13 18 18 C 1.34567 * 110.87594 * 359.97438 * 17 16 15 19 19 C 1.47932 * 125.56970 * 180.02562 * 18 17 16 20 20 N 1.34196 * 126.69969 * 180.02562 * 19 18 17 21 21 N 1.28986 * 107.25254 * 179.97438 * 20 19 18 22 22 N 1.28717 * 108.99180 * 0.02562 * 21 20 19 23 23 H 0.96995 * 125.31967 * 180.02562 * 22 21 20 24 24 N 1.28876 * 109.36212 * 359.72033 * 22 21 20 25 25 C 1.35556 * 108.85872 * 359.75817 * 18 17 16 26 26 H 1.09000 * 109.46989 * 177.71512 * 3 2 1 27 27 H 1.09005 * 109.46697 * 297.71702 * 3 2 1 28 28 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 29 29 H 1.07998 * 125.68630 * 359.93999 * 16 15 13 30 30 H 1.07994 * 127.07136 * 180.22953 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7369 -1.1677 5 6 3.4236 -2.0621 -1.0531 6 1 3.9861 -2.5490 -1.8358 7 6 3.0313 -2.7798 0.0705 8 7 1.9897 -2.3884 0.7697 9 14 3.9846 -4.3011 0.5867 10 1 5.3936 -3.9290 0.8725 11 1 3.3681 -4.8813 1.8067 12 1 3.9497 -5.3027 -0.5092 13 6 3.2246 -0.1114 -2.3547 14 8 3.5387 -0.7443 -3.3447 15 6 2.9839 1.3389 -2.4529 16 6 2.3302 2.1293 -1.5500 17 8 2.3254 3.3855 -2.0066 18 6 2.9575 3.4673 -3.1918 19 6 3.1420 4.7021 -3.9852 20 7 3.7669 4.8096 -5.1679 21 7 3.7086 6.0490 -5.5202 22 7 3.0796 6.7128 -4.6143 23 1 2.9005 7.6657 -4.6401 24 7 2.7193 5.9123 -3.6708 25 6 3.4027 2.2343 -3.5370 26 1 2.9708 1.0277 -0.0410 27 1 2.9715 -0.4772 0.9098 28 1 1.7158 -2.8897 1.5537 29 1 1.8901 1.7946 -0.6222 30 1 3.9505 1.9658 -4.4281 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:59 Heat of formation + Delta-G solvation = 177.200401 kcal Electronic energy + Delta-G solvation = -21591.745275 eV Core-core repulsion = 18008.389659 eV Total energy + Delta-G solvation = -3583.355615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -44.65953 -42.37136 -38.81466 -36.04184 -34.68954 -34.51248 -33.66207 -32.77486 -31.83166 -29.79161 -27.70305 -25.51919 -24.79070 -24.28393 -22.46097 -21.09497 -19.70607 -19.25680 -18.14621 -17.41282 -17.37468 -16.61193 -16.35715 -15.85195 -15.10308 -14.51897 -14.29003 -14.18845 -13.57681 -13.18618 -12.94225 -12.67294 -12.55655 -12.17364 -11.98377 -11.80252 -11.64464 -11.48730 -11.33836 -11.32354 -11.24329 -10.71370 -10.51501 -10.46210 -9.50203 -9.34567 -8.83774 -8.42225 -8.21036 -6.66570 -4.07583 0.71221 1.15472 1.89942 1.92983 2.53381 2.69386 3.11137 3.16754 3.18706 3.41346 3.63446 3.69156 4.00856 4.06859 4.29169 4.60171 4.73400 4.86430 4.96852 5.09534 5.19644 5.27713 5.60896 5.78624 5.89325 6.01680 6.13847 6.32737 6.43203 7.04716 7.34744 7.76348 7.91918 8.15561 8.47940 8.86703 9.04335 9.61390 10.39373 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003959 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.229443 B = 7070.170574 C = 7664.924854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.231 3.769 3 C 0.195 3.805 4 N -0.427 5.427 5 C -0.311 4.311 6 H 0.115 0.885 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.931 3.069 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.512 3.488 14 O -0.565 6.565 15 C -0.197 4.197 16 C -0.001 4.001 17 O -0.162 6.162 18 C 0.031 3.969 19 C 0.264 3.736 20 N -0.251 5.251 21 N -0.046 5.046 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.285 5.285 25 C -0.081 4.081 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.277 0.723 29 H 0.227 0.773 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 15.576 -1.721 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.087 4.087 3 C 0.068 3.932 4 N -0.146 5.146 5 C -0.438 4.438 6 H 0.133 0.867 7 C -0.171 4.171 8 N -0.508 5.508 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.302 3.698 14 O -0.448 6.448 15 C -0.202 4.202 16 C -0.072 4.072 17 O -0.057 6.057 18 C -0.021 4.021 19 C -0.015 4.015 20 N -0.126 5.126 21 N -0.041 5.041 22 N -0.073 5.073 23 H 0.331 0.669 24 N -0.137 5.137 25 C -0.105 4.105 26 H 0.114 0.886 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.243 0.757 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.003 15.756 -2.414 16.066 hybrid contribution 0.329 -0.632 0.823 1.089 sum 2.332 15.125 -1.590 15.386 Atomic orbital electron populations 1.80966 1.13280 1.10381 1.08460 1.29236 0.95365 0.91330 0.92814 1.19355 0.81619 0.97349 0.94871 1.43513 1.55460 1.10178 1.05435 1.19779 1.32921 0.84656 1.06438 0.86740 1.25322 0.95061 0.99743 0.97002 1.69896 1.20368 1.41676 1.18825 0.85909 0.79752 0.80528 0.78176 1.19457 1.20901 1.19598 1.16909 0.84974 0.84451 0.83486 1.90661 1.52737 1.66452 1.34951 1.21841 1.05967 0.96217 0.96162 1.25819 1.01398 0.79879 1.00121 1.83775 1.60724 1.30734 1.30425 1.17557 1.06517 0.89880 0.88142 1.21897 0.97983 0.89577 0.92029 1.76197 1.18387 1.07745 1.10236 1.78944 1.11537 0.98869 1.14765 1.47689 1.35051 1.13605 1.10957 0.66907 1.75175 1.22178 1.01323 1.15058 1.22807 0.99357 0.88758 0.99574 0.88583 0.84579 0.91221 0.75719 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.11 18.54 42.15 0.78 -9.32 16 2 C 0.23 4.78 11.39 -20.76 -0.24 4.54 16 3 C 0.20 3.67 4.71 -6.83 -0.03 3.63 16 4 N -0.43 -9.72 2.60 -119.18 -0.31 -10.03 16 5 C -0.31 -7.73 9.34 -14.98 -0.14 -7.87 16 6 H 0.11 3.00 7.39 -52.49 -0.39 2.61 16 7 C 0.03 0.79 4.83 -17.46 -0.08 0.70 16 8 N -0.87 -20.75 9.51 55.50 0.53 -20.22 16 9 Si 0.93 18.68 29.62 -169.99 -5.03 13.65 16 10 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.51 11.78 7.56 -12.56 -0.09 11.69 16 14 O -0.56 -14.97 16.66 5.25 0.09 -14.88 16 15 C -0.20 -3.71 6.08 -103.35 -0.63 -4.34 16 16 C 0.00 -0.02 9.61 30.16 0.29 0.27 16 17 O -0.16 -2.54 10.54 6.66 0.07 -2.47 16 18 C 0.03 0.48 7.22 -36.57 -0.26 0.22 16 19 C 0.26 3.76 8.20 -156.25 -1.28 2.48 16 20 N -0.25 -3.50 12.52 32.08 0.40 -3.10 16 21 N -0.05 -0.51 13.46 60.35 0.81 0.30 16 22 N -0.23 -1.92 7.90 60.35 0.48 -1.44 16 23 H 0.48 1.46 8.96 -340.34 -3.05 -1.59 16 24 N -0.29 -3.43 12.41 32.10 0.40 -3.03 16 25 C -0.08 -1.38 10.96 -37.12 -0.41 -1.79 16 26 H 0.10 1.40 4.67 -51.93 -0.24 1.16 16 27 H 0.14 2.56 6.31 -51.93 -0.33 2.23 16 28 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 29 H 0.23 3.36 3.50 -52.49 -0.18 3.17 16 30 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -31.98 282.18 -4.16 -36.14 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.75 Total: 0.61 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -2.88 Total: 9.54 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 3.09 Total: -46.84 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.16 Total: -17.35 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.98 -4.16 -36.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.343 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds