Wall clock time and date at job start Tue Mar 31 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47224 * 57.71349 * 3 2 1 5 5 C 1.36968 * 120.00134 * 264.97383 * 4 3 2 6 6 H 1.07993 * 119.99651 * 193.76482 * 5 4 3 7 7 C 1.38974 * 119.99808 * 13.75932 * 5 4 3 8 8 N 1.31419 * 120.00262 * 24.44217 * 7 5 4 9 9 Si 1.86799 * 120.00058 * 204.43657 * 7 5 4 10 10 H 1.48504 * 109.46998 * 60.00156 * 9 7 5 11 11 H 1.48496 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47147 * 300.00347 * 9 7 5 13 13 C 1.34779 * 119.99871 * 84.97367 * 4 3 2 14 14 O 1.21633 * 119.99611 * 185.23002 * 13 4 3 15 15 C 1.47342 * 119.99870 * 5.22899 * 13 4 3 16 16 C 1.36651 * 127.11630 * 343.05802 * 15 13 4 17 17 O 1.33666 * 108.63644 * 179.97438 * 16 15 13 18 18 C 1.34567 * 110.87594 * 359.97438 * 17 16 15 19 19 C 1.47932 * 125.56970 * 180.02562 * 18 17 16 20 20 N 1.34196 * 126.69969 * 180.02562 * 19 18 17 21 21 N 1.28986 * 107.25254 * 179.97438 * 20 19 18 22 22 N 1.28717 * 108.99180 * 0.02562 * 21 20 19 23 23 H 0.96995 * 125.31967 * 180.02562 * 22 21 20 24 24 N 1.28876 * 109.36212 * 359.72033 * 22 21 20 25 25 C 1.35556 * 108.85872 * 359.75817 * 18 17 16 26 26 H 1.09000 * 109.46989 * 177.71512 * 3 2 1 27 27 H 1.09005 * 109.46697 * 297.71702 * 3 2 1 28 28 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 29 29 H 1.07998 * 125.68630 * 359.93999 * 16 15 13 30 30 H 1.07994 * 127.07136 * 180.22953 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.7369 -1.1677 5 6 3.4236 -2.0621 -1.0531 6 1 3.9861 -2.5490 -1.8358 7 6 3.0313 -2.7798 0.0705 8 7 1.9897 -2.3884 0.7697 9 14 3.9846 -4.3011 0.5867 10 1 5.3936 -3.9290 0.8725 11 1 3.3681 -4.8813 1.8067 12 1 3.9497 -5.3027 -0.5092 13 6 3.2246 -0.1114 -2.3547 14 8 3.5387 -0.7443 -3.3447 15 6 2.9839 1.3389 -2.4529 16 6 2.3302 2.1293 -1.5500 17 8 2.3254 3.3855 -2.0066 18 6 2.9575 3.4673 -3.1918 19 6 3.1420 4.7021 -3.9852 20 7 3.7669 4.8096 -5.1679 21 7 3.7086 6.0490 -5.5202 22 7 3.0796 6.7128 -4.6143 23 1 2.9005 7.6657 -4.6401 24 7 2.7193 5.9123 -3.6708 25 6 3.4027 2.2343 -3.5370 26 1 2.9708 1.0277 -0.0410 27 1 2.9715 -0.4772 0.9098 28 1 1.7158 -2.8897 1.5537 29 1 1.8901 1.7946 -0.6222 30 1 3.9505 1.9658 -4.4281 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:57 Heat of formation + Delta-G solvation = 154.030227 kcal Electronic energy + Delta-G solvation = -21592.750009 eV Core-core repulsion = 18008.389659 eV Total energy + Delta-G solvation = -3584.360350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.60779 -43.71442 -40.54048 -37.80326 -36.29691 -35.65832 -34.67932 -34.35514 -33.42093 -31.13702 -29.30386 -27.25275 -25.76638 -25.41561 -24.00293 -22.33109 -21.15709 -20.27669 -19.89332 -18.82075 -18.38590 -18.09730 -17.87832 -17.15641 -16.77221 -16.10710 -15.92048 -15.34469 -15.23733 -14.72738 -14.50646 -14.10048 -13.92065 -13.56775 -13.49302 -13.41685 -13.21610 -12.93249 -12.60436 -12.36085 -12.33634 -12.31530 -12.19403 -12.09282 -11.17326 -10.90040 -10.66240 -10.03617 -9.70178 -8.47967 -5.97045 -0.32878 0.10269 0.47575 1.00715 1.43726 1.49419 1.52421 1.54011 1.60954 1.77900 2.01420 2.29400 2.37000 2.58307 2.93421 3.05120 3.20532 3.37715 3.60926 3.64862 3.93030 4.15490 4.24323 4.42436 4.52234 4.67271 4.80014 5.06850 5.46320 5.53152 5.72005 5.96082 6.34017 6.81664 6.96070 7.03678 7.24168 7.82458 8.56203 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003959 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.229443 B = 7070.170574 C = 7664.924854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.243 3.757 3 C 0.196 3.804 4 N -0.436 5.436 5 C -0.345 4.345 6 H 0.089 0.911 7 C 0.012 3.988 8 N -0.882 5.882 9 Si 0.990 3.010 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.613 6.613 15 C -0.222 4.222 16 C 0.026 3.974 17 O -0.152 6.152 18 C 0.046 3.954 19 C 0.245 3.755 20 N -0.274 5.274 21 N -0.042 5.042 22 N -0.189 5.189 23 H 0.499 0.501 24 N -0.280 5.280 25 C -0.094 4.094 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.281 0.719 29 H 0.241 0.759 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 17.565 -0.816 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.075 4.075 3 C 0.070 3.930 4 N -0.153 5.153 5 C -0.472 4.472 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.520 5.520 9 Si 0.814 3.186 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.208 1.208 13 C 0.297 3.703 14 O -0.500 6.500 15 C -0.227 4.227 16 C -0.046 4.046 17 O -0.046 6.046 18 C -0.005 4.005 19 C -0.034 4.034 20 N -0.148 5.148 21 N -0.037 5.037 22 N -0.042 5.042 23 H 0.359 0.641 24 N -0.134 5.134 25 C -0.117 4.117 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.075 17.799 -1.488 17.982 hybrid contribution 0.261 -1.075 0.483 1.207 sum 2.336 16.725 -1.005 16.917 Atomic orbital electron populations 1.80973 1.14210 1.11462 1.09432 1.29549 0.95647 0.90408 0.91879 1.19672 0.80425 0.99423 0.93497 1.43638 1.55277 1.09955 1.06464 1.19691 1.34420 0.86169 1.06920 0.89334 1.25930 0.95200 1.01842 0.96187 1.69953 1.20609 1.42557 1.18863 0.85029 0.79081 0.77116 0.77370 1.18329 1.20097 1.20797 1.17463 0.83883 0.85987 0.82932 1.90612 1.54799 1.68003 1.36572 1.21498 1.08515 0.94398 0.98287 1.25834 0.99590 0.79564 0.99589 1.83805 1.60293 1.30121 1.30415 1.17623 1.05051 0.90171 0.87685 1.21691 0.99548 0.89725 0.92439 1.76210 1.19120 1.08994 1.10433 1.78905 1.11659 0.98245 1.14878 1.47757 1.32701 1.14407 1.09293 0.64060 1.75125 1.21723 1.00880 1.15641 1.22781 1.00328 0.89039 0.99550 0.84110 0.84298 0.90907 0.74351 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.15 18.54 20.01 0.37 -20.78 16 2 C 0.24 9.82 11.39 89.44 1.02 10.84 16 3 C 0.20 7.15 4.71 84.57 0.40 7.55 16 4 N -0.44 -20.04 2.60 -649.22 -1.69 -21.72 16 5 C -0.35 -17.53 9.34 84.07 0.79 -16.74 16 6 H 0.09 4.87 7.39 -2.91 -0.02 4.85 16 7 C 0.01 0.57 4.83 84.93 0.41 0.98 16 8 N -0.88 -41.52 9.51 21.67 0.21 -41.32 16 9 Si 0.99 38.08 29.62 68.60 2.03 40.12 16 10 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 11 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 12 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.51 23.83 7.56 86.64 0.65 24.49 16 14 O -0.61 -33.97 16.66 -4.14 -0.07 -34.03 16 15 C -0.22 -8.32 6.08 -19.04 -0.12 -8.43 16 16 C 0.03 0.78 9.61 67.45 0.65 1.43 16 17 O -0.15 -4.44 10.54 0.91 0.01 -4.43 16 18 C 0.05 1.39 7.22 24.22 0.17 1.56 16 19 C 0.25 6.52 8.20 137.12 1.12 7.64 16 20 N -0.27 -7.20 12.52 -52.41 -0.66 -7.86 16 21 N -0.04 -0.83 13.46 37.02 0.50 -0.33 16 22 N -0.19 -2.62 7.90 37.02 0.29 -2.32 16 23 H 0.50 1.25 8.96 -347.52 -3.11 -1.87 16 24 N -0.28 -5.95 12.41 -52.36 -0.65 -6.60 16 25 C -0.09 -3.16 10.96 23.86 0.26 -2.90 16 26 H 0.14 3.81 4.67 -2.39 -0.01 3.80 16 27 H 0.14 5.06 6.31 -2.38 -0.02 5.05 16 28 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 29 H 0.24 6.58 3.50 -2.91 -0.01 6.57 16 30 H 0.17 5.64 8.06 -2.91 -0.02 5.61 16 Total: -1.00 -69.80 282.18 3.86 -65.94 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -1.85 Total: 6.93 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 5.36 Total: 26.42 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -1.62 Total: -100.93 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.06 Total: -38.46 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.12 kcal Total: -69.80 3.86 -65.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.966 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds