Wall clock time and date at job start Tue Mar 31 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34628 * 124.80592 * 2 1 4 4 C 1.37850 * 108.20354 * 179.89180 * 3 2 1 5 5 C 1.47110 * 127.02371 * 180.13754 * 4 3 2 6 6 O 1.21551 * 119.99694 * 180.26710 * 5 4 3 7 7 O 1.34783 * 119.99747 * 0.26672 * 5 4 3 8 8 C 1.46742 * 105.94898 * 0.36049 * 4 3 2 9 9 C 1.34435 * 106.37779 * 359.77795 * 8 4 3 10 10 S 1.76197 * 125.45597 * 180.02562 * 9 8 4 11 11 O 1.42097 * 106.40377 * 85.56603 * 10 9 8 12 12 O 1.42109 * 106.40072 * 218.48434 * 10 9 8 13 13 N 1.65602 * 107.21952 * 332.01981 * 10 9 8 14 14 C 1.46500 * 119.99605 * 66.80446 * 13 10 9 15 15 C 1.50699 * 109.46898 * 161.37444 * 14 13 10 16 16 H 1.07997 * 120.00418 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99582 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47067 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47012 * 210.00224 * 19 17 15 22 22 H 1.48504 * 109.46984 * 330.00271 * 19 17 15 23 23 H 1.08993 * 109.46809 * 269.69587 * 1 2 3 24 24 H 1.08999 * 109.46895 * 149.69512 * 1 2 3 25 25 H 1.09000 * 109.46626 * 29.69787 * 1 2 3 26 26 H 1.07992 * 125.90068 * 0.04265 * 3 2 1 27 27 H 0.96708 * 116.99584 * 180.02562 * 7 5 4 28 28 H 1.08005 * 126.80971 * 179.76118 * 8 4 3 29 29 H 0.96998 * 120.00002 * 246.79810 * 13 10 9 30 30 H 1.08997 * 109.46979 * 281.37463 * 14 13 10 31 31 H 1.09000 * 109.47361 * 41.37900 * 14 13 10 32 32 H 0.97001 * 119.99593 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2335 1.1054 0.0000 4 6 3.5545 0.7115 0.0025 5 6 4.7390 1.5840 0.0062 6 8 5.8526 1.0968 0.0032 7 8 4.5893 2.9235 0.0129 8 6 3.5378 -0.7558 -0.0048 9 6 2.2438 -1.1201 -0.0060 10 16 1.6489 -2.7786 -0.0133 11 8 1.6132 -3.1981 1.3438 12 8 0.5087 -2.7922 -0.8613 13 7 2.7980 -3.7083 -0.7602 14 6 4.1058 -3.9033 -0.1293 15 6 4.7809 -5.1069 -0.7347 16 1 4.2857 -5.6700 -1.5119 17 6 6.0315 -5.4887 -0.2970 18 7 6.6348 -4.8028 0.6491 19 14 6.8687 -6.9802 -1.0479 20 1 7.6802 -6.5561 -2.2169 21 1 7.7517 -7.6139 -0.0360 22 1 5.8396 -7.9564 -1.4876 23 1 -0.3633 -0.0055 1.0276 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3632 0.8927 -0.5091 26 1 1.8767 2.1247 0.0007 27 1 5.3969 3.4554 0.0148 28 1 4.3951 -1.4127 -0.0088 29 1 2.6052 -4.1237 -1.6152 30 1 4.7232 -3.0200 -0.2924 31 1 3.9730 -4.0613 0.9410 32 1 7.5147 -5.0711 0.9567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608102766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:11 Heat of formation + Delta-G solvation = -114.286270 kcal Electronic energy + Delta-G solvation = -20836.963979 eV Core-core repulsion = 17311.827002 eV Total energy + Delta-G solvation = -3525.136977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33763 -39.53129 -36.87278 -35.87375 -35.55126 -34.83675 -32.96519 -32.16181 -29.82270 -27.10090 -26.77889 -23.77926 -22.58873 -21.40553 -20.34405 -19.14771 -18.00222 -17.51333 -17.35220 -16.13188 -15.92939 -15.67972 -15.44712 -15.31020 -15.09250 -14.62373 -13.98169 -13.63668 -13.25226 -12.90137 -12.82414 -12.57393 -12.14417 -12.03125 -11.86539 -11.69713 -11.65246 -11.44868 -11.08874 -10.92960 -10.75478 -10.51395 -10.13547 -9.48306 -9.00148 -8.87364 -8.76638 -8.28782 -6.16759 -4.22607 0.74970 1.43372 1.83605 2.47211 3.27007 3.27590 3.30288 3.33904 3.36452 3.52856 3.89814 4.35275 4.52789 4.64773 4.94163 5.01875 5.13356 5.20054 5.27081 5.40692 5.75293 5.83148 6.32037 6.42912 6.56209 6.68789 6.86166 7.24526 7.26920 7.70282 7.79356 8.08452 8.12592 8.80497 9.42573 10.93244 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.005973 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.404487 B = 4686.453580 C = 6268.801831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.388 5.388 3 C 0.110 3.890 4 C -0.243 4.243 5 C 0.555 3.445 6 O -0.512 6.512 7 O -0.522 6.522 8 C -0.015 4.015 9 C -0.559 4.559 10 S 2.711 3.289 11 O -0.948 6.948 12 O -0.979 6.979 13 N -1.092 6.092 14 C 0.238 3.762 15 C -0.533 4.533 16 H 0.067 0.933 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.188 0.812 27 H 0.411 0.589 28 H 0.179 0.821 29 H 0.415 0.585 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 13.703 -2.088 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.060 5.060 3 C -0.033 4.033 4 C -0.251 4.251 5 C 0.400 3.600 6 O -0.400 6.400 7 O -0.335 6.335 8 C -0.040 4.040 9 C -0.746 4.746 10 S 2.794 3.206 11 O -0.938 6.938 12 O -0.968 6.968 13 N -0.857 5.857 14 C 0.115 3.885 15 C -0.573 4.573 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.105 0.895 24 H 0.134 0.866 25 H 0.117 0.883 26 H 0.205 0.795 27 H 0.269 0.731 28 H 0.196 0.804 29 H 0.250 0.750 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.346 13.116 -1.424 17.401 hybrid contribution 1.622 0.200 -0.817 1.827 sum -9.724 13.316 -2.241 16.640 Atomic orbital electron populations 1.22788 0.75746 1.07457 1.04988 1.43096 1.06723 1.04092 1.52092 1.22669 0.90032 0.92164 0.98411 1.19796 0.90204 0.92821 1.22324 1.19739 0.88070 0.80025 0.72156 1.90954 1.26708 1.75773 1.46578 1.84541 1.42798 1.19381 1.86733 1.22524 0.95334 0.93137 0.93038 1.33172 0.99929 1.14566 1.26922 1.01531 0.72620 0.72333 0.74156 1.93621 1.85805 1.79349 1.34976 1.93492 1.48250 1.86910 1.68198 1.55324 1.31330 1.62712 1.36306 1.19347 0.76890 0.97979 0.94248 1.21135 1.02120 1.11979 1.22049 0.91448 1.24981 0.96980 0.97282 0.94904 1.69933 1.15248 1.39442 1.27714 0.86391 0.79345 0.82217 0.78830 1.20472 1.21018 1.19704 0.89533 0.86598 0.88333 0.79522 0.73140 0.80370 0.74957 0.95461 0.93746 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.80 59.85 0.65 0.94 16 2 N -0.39 -5.19 3.08 -123.26 -0.38 -5.57 16 3 C 0.11 1.35 11.22 -16.47 -0.18 1.16 16 4 C -0.24 -3.82 6.33 -103.01 -0.65 -4.47 16 5 C 0.56 8.55 8.32 34.33 0.29 8.84 16 6 O -0.51 -9.87 17.76 -19.31 -0.34 -10.21 16 7 O -0.52 -5.56 13.28 -40.72 -0.54 -6.10 16 8 C -0.02 -0.28 10.39 -37.49 -0.39 -0.67 16 9 C -0.56 -9.37 6.81 -16.85 -0.11 -9.49 16 10 S 2.71 48.85 5.62 -107.50 -0.60 48.25 16 11 O -0.95 -20.16 17.38 -57.17 -0.99 -21.15 16 12 O -0.98 -17.13 15.73 -57.17 -0.90 -18.03 16 13 N -1.09 -21.41 5.91 -11.66 -0.07 -21.48 16 14 C 0.24 5.77 5.44 -5.19 -0.03 5.74 16 15 C -0.53 -14.08 9.27 -34.44 -0.32 -14.40 16 16 H 0.07 1.69 7.68 -52.49 -0.40 1.28 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.12 1.25 5.69 -51.93 -0.30 0.96 16 25 H 0.10 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.41 2.53 9.11 45.56 0.42 2.95 16 28 H 0.18 3.54 5.28 -52.48 -0.28 3.26 16 29 H 0.42 7.28 8.58 -34.47 -0.30 6.99 16 30 H 0.03 0.68 5.60 -51.93 -0.29 0.39 16 31 H 0.04 1.17 7.64 -51.93 -0.40 0.77 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -35.86 299.15 -6.40 -42.27 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -1.95 Total: 7.14 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.85 Total: -10.75 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.29 Total: -51.69 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -2.78 Total: -55.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 48.85 SS G_CDS: -0.60 Total: 48.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.86 -6.40 -42.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608102766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.018 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds