Wall clock time and date at job start Tue Mar 31 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47074 * 272.55083 * 3 2 1 5 5 H 1.48502 * 109.47079 * 32.54715 * 3 2 1 6 6 H 1.48502 * 109.47203 * 152.54867 * 3 2 1 7 7 C 1.37876 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 354.70316 * 7 2 1 9 9 C 1.50703 * 119.99771 * 174.70381 * 7 2 1 10 10 C 1.52996 * 115.55102 * 88.55106 * 9 7 2 11 11 S 1.81398 * 109.47492 * 65.27183 * 10 9 7 12 12 O 1.42100 * 110.53950 * 62.39096 * 11 10 9 13 13 O 1.42099 * 110.54694 * 285.64329 * 11 10 9 14 14 N 1.65606 * 104.45078 * 174.01625 * 11 10 9 15 15 C 1.47580 * 134.49164 * 90.00333 * 14 11 10 16 16 C 1.53950 * 86.11433 * 204.63681 * 15 14 11 17 17 C 1.50694 * 113.74275 * 221.94033 * 16 15 14 18 18 N 1.34775 * 120.00341 * 178.07760 * 17 16 15 19 19 O 1.21285 * 119.99908 * 358.07341 * 17 16 15 20 20 C 1.47927 * 134.49806 * 270.00332 * 14 11 10 21 21 C 1.53008 * 117.49736 * 234.21744 * 9 7 2 22 22 C 1.52997 * 117.50080 * 302.87675 * 9 7 2 23 23 H 0.97001 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46869 * 305.27487 * 10 9 7 25 25 H 1.08999 * 109.47721 * 185.27573 * 10 9 7 26 26 H 1.09002 * 113.76719 * 90.33995 * 15 14 11 27 27 H 1.08993 * 113.76609 * 318.93391 * 15 14 11 28 28 H 1.09004 * 113.74293 * 90.73788 * 16 15 14 29 29 H 0.97003 * 119.99944 * 359.97438 * 18 17 16 30 30 H 0.96998 * 120.00084 * 180.02562 * 18 17 16 31 31 H 1.08992 * 113.87465 * 41.09743 * 20 14 11 32 32 H 1.09005 * 113.76485 * 269.59906 * 20 14 11 33 33 H 1.08998 * 117.49414 * 215.00467 * 21 9 7 34 34 H 1.08999 * 117.49425 * 0.02562 * 21 9 7 35 35 H 1.09010 * 117.49760 * 359.97438 * 22 9 7 36 36 H 1.09000 * 117.50037 * 144.99730 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4427 2.0775 -1.3987 5 1 1.4746 2.6365 0.7532 6 1 3.5727 1.4251 0.6454 7 6 2.0045 -1.1941 0.0005 8 1 1.4680 -2.1273 0.0873 9 6 3.5067 -1.1969 -0.1199 10 6 4.2747 -1.0990 1.1997 11 16 3.9656 -2.5863 2.1911 12 8 4.4433 -3.7427 1.5175 13 8 2.6593 -2.5509 2.7494 14 7 4.9721 -2.4291 3.4968 15 6 4.8415 -1.8238 4.8364 16 6 6.3746 -1.6857 4.8085 17 6 7.0393 -2.0369 6.1144 18 7 8.3824 -1.9973 6.2191 19 8 6.3657 -2.3552 7.0715 20 6 6.3631 -2.8390 3.7889 21 6 4.1243 -2.0423 -1.2358 22 6 4.1184 -0.5155 -1.3456 23 1 -0.4850 0.8401 -0.0004 24 1 3.9406 -0.2195 1.7501 25 1 5.3418 -1.0149 0.9938 26 1 4.4765 -2.5143 5.5967 27 1 4.3145 -0.8698 4.8378 28 1 6.7224 -0.7386 4.3958 29 1 8.9213 -1.7430 5.4536 30 1 8.8103 -2.2237 7.0596 31 1 7.0498 -2.6950 2.9548 32 1 6.4439 -3.8270 4.2423 33 1 5.0778 -2.5286 -1.0296 34 1 3.4441 -2.5959 -1.8829 35 1 3.4343 -0.0654 -2.0651 36 1 5.0680 0.0027 -1.2118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622473362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:32 Heat of formation + Delta-G solvation = -43.897888 kcal Electronic energy + Delta-G solvation = -21495.138649 eV Core-core repulsion = 18108.887036 eV Total energy + Delta-G solvation = -3386.251613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45967 -37.93869 -37.16889 -36.35340 -35.18901 -33.94210 -32.18855 -29.08768 -28.51864 -26.33990 -25.56531 -23.26236 -21.75176 -20.17781 -19.33100 -18.50788 -17.80066 -17.22012 -17.09641 -16.62525 -15.78968 -15.38542 -15.09300 -14.91914 -14.55465 -13.99563 -13.70711 -13.36183 -13.03716 -12.79546 -12.66462 -12.55064 -12.35631 -11.45203 -11.37933 -11.25759 -11.19806 -11.14853 -10.97187 -10.69100 -10.41347 -10.21192 -10.06678 -10.01282 -9.76061 -9.19857 -9.06742 -8.68735 -8.48489 -6.19068 -4.26893 0.78604 2.30533 3.02599 3.19679 3.27843 3.29213 3.31403 4.06332 4.32166 4.42385 4.43722 4.56130 4.69410 4.79744 4.87831 5.02033 5.19315 5.28667 5.41179 5.53797 5.57917 5.88002 5.92649 5.98370 6.12880 6.14775 6.38150 6.38708 6.45084 6.61900 6.84395 6.99418 7.02517 7.56457 7.95470 8.34372 8.86351 9.41716 10.92499 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.005196 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.321590 B = 5387.805815 C = 5585.399289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.511 4.511 8 H 0.087 0.913 9 C 0.000 4.000 10 C -0.571 4.571 11 S 2.628 3.372 12 O -0.962 6.962 13 O -0.932 6.932 14 N -1.050 6.050 15 C 0.150 3.850 16 C -0.157 4.157 17 C 0.528 3.472 18 N -0.855 5.855 19 O -0.537 6.537 20 C 0.146 3.854 21 C -0.177 4.177 22 C -0.184 4.184 23 H 0.268 0.732 24 H 0.127 0.873 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.403 0.597 30 H 0.401 0.599 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.218 -0.036 8.010 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.548 4.548 8 H 0.105 0.895 9 C -0.003 4.003 10 C -0.703 4.703 11 S 2.726 3.274 12 O -0.953 6.953 13 O -0.922 6.922 14 N -0.888 5.888 15 C 0.025 3.975 16 C -0.180 4.180 17 C 0.311 3.689 18 N -0.419 5.419 19 O -0.413 6.413 20 C 0.020 3.980 21 C -0.214 4.214 22 C -0.222 4.222 23 H 0.078 0.922 24 H 0.145 0.855 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.145 0.855 29 H 0.231 0.769 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.667 -0.875 8.213 19.502 hybrid contribution 1.255 1.727 -0.217 2.145 sum 18.922 0.852 7.995 20.559 Atomic orbital electron populations 1.69897 1.06422 1.27368 1.47969 1.24956 0.94536 0.98987 0.93148 0.86913 0.80677 0.83477 0.78719 1.20100 1.21648 1.18158 1.20342 0.85938 0.95561 1.52932 0.89533 1.18876 0.94956 1.02697 0.83788 1.30311 1.07050 1.20528 1.12372 1.04693 0.72959 0.76783 0.72958 1.93503 1.81403 1.45710 1.74662 1.93588 1.35505 1.87098 1.76008 1.60818 1.27017 1.73367 1.27555 1.22515 0.92388 0.99222 0.83407 1.23646 0.98494 1.02077 0.93800 1.20477 0.82434 0.76167 0.89798 1.43903 1.07470 1.72767 1.17726 1.90771 1.63743 1.47111 1.39653 1.22527 0.82814 0.96607 0.96086 1.23028 1.01460 0.92848 1.04054 1.22986 1.01080 0.95242 1.02927 0.92239 0.85524 0.87629 0.88353 0.89280 0.85501 0.76911 0.76880 0.89290 0.89508 0.90030 0.88592 0.88871 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 20.76 24.96 -169.99 -4.24 16.52 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.26 -5.54 5.68 56.52 0.32 -5.22 16 7 C -0.51 -14.24 8.77 -34.44 -0.30 -14.54 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 C 0.00 -0.01 0.79 -155.66 -0.12 -0.13 16 10 C -0.57 -10.86 5.65 37.16 0.21 -10.65 16 11 S 2.63 51.93 5.67 -107.50 -0.61 51.32 16 12 O -0.96 -20.54 18.03 -57.54 -1.04 -21.58 16 13 O -0.93 -22.66 17.68 -57.54 -1.02 -23.68 16 14 N -1.05 -15.25 4.00 -118.53 -0.47 -15.73 16 15 C 0.15 1.90 8.25 -2.96 -0.02 1.88 16 16 C -0.16 -1.39 4.33 -90.84 -0.39 -1.78 16 17 C 0.53 4.94 7.63 -10.99 -0.08 4.86 16 18 N -0.86 -4.34 8.87 31.22 0.28 -4.06 16 19 O -0.54 -7.46 16.75 5.55 0.09 -7.37 16 20 C 0.15 1.47 8.49 -2.77 -0.02 1.45 16 21 C -0.18 -3.58 9.96 -26.69 -0.27 -3.84 16 22 C -0.18 -3.72 7.67 -26.69 -0.20 -3.92 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.13 2.38 6.53 -51.92 -0.34 2.04 16 25 H 0.11 1.56 8.09 -51.92 -0.42 1.14 16 26 H 0.10 1.33 7.44 -51.93 -0.39 0.94 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.40 0.83 8.83 -40.82 -0.36 0.47 16 30 H 0.40 1.72 8.93 -40.82 -0.36 1.35 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.09 1.98 7.34 -51.92 -0.38 1.59 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -37.95 317.29 -7.61 -45.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.85 Total: 4.40 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -1.31 Total: -24.26 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.58 Total: -45.71 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.96 Total: -52.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.24 Total: 16.52 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.61 Total: 51.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.95 -7.61 -45.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622473362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.664 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds