Wall clock time and date at job start Tue Mar 31 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47074 * 272.55083 * 3 2 1 5 5 H 1.48502 * 109.47079 * 32.54715 * 3 2 1 6 6 H 1.48502 * 109.47203 * 152.54867 * 3 2 1 7 7 C 1.37876 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00315 * 354.70316 * 7 2 1 9 9 C 1.50703 * 119.99771 * 174.70381 * 7 2 1 10 10 C 1.52996 * 115.55102 * 88.55106 * 9 7 2 11 11 S 1.81398 * 109.47492 * 65.27183 * 10 9 7 12 12 O 1.42100 * 110.53950 * 62.39096 * 11 10 9 13 13 O 1.42099 * 110.54694 * 285.64329 * 11 10 9 14 14 N 1.65606 * 104.45078 * 174.01625 * 11 10 9 15 15 C 1.47580 * 134.49164 * 90.00333 * 14 11 10 16 16 C 1.53950 * 86.11433 * 204.63681 * 15 14 11 17 17 C 1.50694 * 113.74275 * 221.94033 * 16 15 14 18 18 N 1.34775 * 120.00341 * 178.07760 * 17 16 15 19 19 O 1.21285 * 119.99908 * 358.07341 * 17 16 15 20 20 C 1.47927 * 134.49806 * 270.00332 * 14 11 10 21 21 C 1.53008 * 117.49736 * 234.21744 * 9 7 2 22 22 C 1.52997 * 117.50080 * 302.87675 * 9 7 2 23 23 H 0.97001 * 119.99715 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46869 * 305.27487 * 10 9 7 25 25 H 1.08999 * 109.47721 * 185.27573 * 10 9 7 26 26 H 1.09002 * 113.76719 * 90.33995 * 15 14 11 27 27 H 1.08993 * 113.76609 * 318.93391 * 15 14 11 28 28 H 1.09004 * 113.74293 * 90.73788 * 16 15 14 29 29 H 0.97003 * 119.99944 * 359.97438 * 18 17 16 30 30 H 0.96998 * 120.00084 * 180.02562 * 18 17 16 31 31 H 1.08992 * 113.87465 * 41.09743 * 20 14 11 32 32 H 1.09005 * 113.76485 * 269.59906 * 20 14 11 33 33 H 1.08998 * 117.49414 * 215.00467 * 21 9 7 34 34 H 1.08999 * 117.49425 * 0.02562 * 21 9 7 35 35 H 1.09010 * 117.49760 * 359.97438 * 22 9 7 36 36 H 1.09000 * 117.50037 * 144.99730 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4427 2.0775 -1.3987 5 1 1.4746 2.6365 0.7532 6 1 3.5727 1.4251 0.6454 7 6 2.0045 -1.1941 0.0005 8 1 1.4680 -2.1273 0.0873 9 6 3.5067 -1.1969 -0.1199 10 6 4.2747 -1.0990 1.1997 11 16 3.9656 -2.5863 2.1911 12 8 4.4433 -3.7427 1.5175 13 8 2.6593 -2.5509 2.7494 14 7 4.9721 -2.4291 3.4968 15 6 4.8415 -1.8238 4.8364 16 6 6.3746 -1.6857 4.8085 17 6 7.0393 -2.0369 6.1144 18 7 8.3824 -1.9973 6.2191 19 8 6.3657 -2.3552 7.0715 20 6 6.3631 -2.8390 3.7889 21 6 4.1243 -2.0423 -1.2358 22 6 4.1184 -0.5155 -1.3456 23 1 -0.4850 0.8401 -0.0004 24 1 3.9406 -0.2195 1.7501 25 1 5.3418 -1.0149 0.9938 26 1 4.4765 -2.5143 5.5967 27 1 4.3145 -0.8698 4.8378 28 1 6.7224 -0.7386 4.3958 29 1 8.9213 -1.7430 5.4536 30 1 8.8103 -2.2237 7.0596 31 1 7.0498 -2.6950 2.9548 32 1 6.4439 -3.8270 4.2423 33 1 5.0778 -2.5286 -1.0296 34 1 3.4441 -2.5959 -1.8829 35 1 3.4343 -0.0654 -2.0651 36 1 5.0680 0.0027 -1.2118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622473362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:32 Heat of formation + Delta-G solvation = -78.606720 kcal Electronic energy + Delta-G solvation = -21496.643737 eV Core-core repulsion = 18108.887036 eV Total energy + Delta-G solvation = -3387.756701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.26368 -38.87974 -38.77370 -37.99014 -36.83138 -34.56910 -34.30105 -30.19728 -29.89301 -27.61952 -27.21309 -24.16037 -23.32688 -21.29222 -20.74019 -19.76207 -18.89849 -18.47176 -18.12607 -17.80996 -17.18492 -16.95787 -16.63592 -16.06544 -15.55076 -15.44821 -14.87623 -14.77773 -14.67138 -14.37144 -13.94682 -13.60466 -13.41160 -13.21819 -13.00406 -12.98959 -12.67832 -12.47354 -12.38304 -12.03842 -11.98092 -11.75227 -11.69242 -10.97478 -10.93553 -10.72430 -10.59025 -10.35667 -9.96396 -8.32590 -6.46680 -0.68362 1.35794 1.38074 1.51365 1.60348 1.80876 2.36194 2.65348 2.94465 3.00478 3.12019 3.18133 3.36203 3.50959 3.85845 4.07733 4.11071 4.28779 4.32335 4.38488 4.49011 4.58390 4.62568 4.64643 4.87238 4.90208 5.06401 5.10650 5.22821 5.40353 5.46715 5.61445 5.97072 6.18398 6.53921 6.65155 7.26303 7.41471 8.84183 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.005196 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.321590 B = 5387.805815 C = 5585.399289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.021 3.979 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.208 1.208 7 C -0.516 4.516 8 H 0.022 0.978 9 C -0.038 4.038 10 C -0.558 4.558 11 S 2.627 3.373 12 O -0.990 6.990 13 O -1.001 7.001 14 N -1.052 6.052 15 C 0.130 3.870 16 C -0.128 4.128 17 C 0.527 3.473 18 N -0.830 5.830 19 O -0.592 6.592 20 C 0.140 3.860 21 C -0.174 4.174 22 C -0.163 4.163 23 H 0.268 0.732 24 H 0.133 0.867 25 H 0.167 0.833 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.422 0.578 30 H 0.408 0.592 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.681 2.291 7.733 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.130 1.130 7 C -0.554 4.554 8 H 0.041 0.959 9 C -0.041 4.041 10 C -0.691 4.691 11 S 2.729 3.271 12 O -0.980 6.980 13 O -0.991 6.991 14 N -0.892 5.892 15 C 0.005 3.995 16 C -0.152 4.152 17 C 0.311 3.689 18 N -0.393 5.393 19 O -0.472 6.472 20 C 0.015 3.985 21 C -0.211 4.211 22 C -0.201 4.201 23 H 0.077 0.923 24 H 0.151 0.849 25 H 0.184 0.816 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.188 0.812 29 H 0.254 0.746 30 H 0.239 0.761 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.208 1.407 7.910 24.560 hybrid contribution -0.438 0.844 -0.108 0.957 sum 22.770 2.252 7.803 24.175 Atomic orbital electron populations 1.70089 1.08999 1.28519 1.50714 1.26054 0.95327 1.03769 0.92581 0.85917 0.81181 0.77170 0.79802 1.18599 1.22383 1.12968 1.20479 0.89512 0.93193 1.52179 0.95939 1.18805 0.92179 1.06497 0.86602 1.30093 1.10145 1.19283 1.09594 1.04214 0.72178 0.77112 0.73594 1.93450 1.81482 1.47362 1.75708 1.93507 1.40040 1.88049 1.77501 1.60371 1.28391 1.73729 1.26747 1.22737 0.96028 0.98959 0.81809 1.23515 0.95015 1.03433 0.93207 1.20547 0.83467 0.75678 0.89232 1.43693 1.06090 1.70701 1.18863 1.90769 1.65203 1.49820 1.41417 1.22960 0.80634 0.97092 0.97775 1.23109 1.02200 0.93628 1.02162 1.23106 1.02248 0.95051 0.99729 0.92289 0.84858 0.81561 0.90483 0.88596 0.81229 0.74634 0.76081 0.85208 0.89885 0.86571 0.90584 0.90383 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.02 1.24 5.47 84.65 0.46 1.70 16 3 Si 0.94 41.41 24.96 68.60 1.71 43.12 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.21 -7.48 5.68 99.48 0.57 -6.91 16 7 C -0.52 -29.86 8.77 25.60 0.22 -29.64 16 8 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 9 C -0.04 -1.65 0.79 -52.93 -0.04 -1.70 16 10 C -0.56 -18.97 5.65 71.98 0.41 -18.56 16 11 S 2.63 102.44 5.67 -56.49 -0.32 102.12 16 12 O -0.99 -41.75 18.03 -127.65 -2.30 -44.05 16 13 O -1.00 -51.44 17.68 -127.65 -2.26 -53.69 16 14 N -1.05 -28.35 4.00 -528.93 -2.12 -30.47 16 15 C 0.13 3.13 8.25 86.49 0.71 3.84 16 16 C -0.13 -1.75 4.33 -10.88 -0.05 -1.80 16 17 C 0.53 8.31 7.63 87.66 0.67 8.98 16 18 N -0.83 -5.04 8.87 -173.54 -1.54 -6.58 16 19 O -0.59 -15.93 16.75 -3.05 -0.05 -15.98 16 20 C 0.14 2.27 8.49 86.42 0.73 3.01 16 21 C -0.17 -6.58 9.96 30.62 0.30 -6.27 16 22 C -0.16 -5.83 7.67 30.62 0.23 -5.59 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.13 4.40 6.53 -2.39 -0.02 4.39 16 25 H 0.17 3.60 8.09 -2.39 -0.02 3.59 16 26 H 0.08 2.16 7.44 -2.39 -0.02 2.14 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.17 0.91 8.14 -2.38 -0.02 0.90 16 29 H 0.42 -0.53 8.83 -92.71 -0.82 -1.35 16 30 H 0.41 2.09 8.93 -92.71 -0.83 1.26 16 31 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.41 8.09 -2.38 -0.02 1.39 16 33 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.08 3.05 7.34 -2.38 -0.02 3.03 16 36 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -92.83 317.29 -3.58 -96.41 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.67 Total: 15.36 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 3.66 Total: -46.03 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.36 Total: -97.25 kcal Atomic # 8 Polarization: -109.12 SS G_CDS: -4.61 Total: -113.73 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.71 Total: 43.12 kcal Atomic # 16 Polarization: 102.44 SS G_CDS: -0.32 Total: 102.12 kcal Total: -92.83 -3.58 -96.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622473362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.803 kcal (2) G-P(sol) polarization free energy of solvation -92.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds