Wall clock time and date at job start Tue Mar 31 2020 03:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99757 * 2 1 4 4 H 1.48499 * 109.47426 * 272.55529 * 3 2 1 5 5 H 1.48505 * 109.47412 * 32.55694 * 3 2 1 6 6 H 1.48500 * 109.47190 * 152.55431 * 3 2 1 7 7 C 1.37875 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 354.69303 * 7 2 1 9 9 C 1.50699 * 119.99771 * 174.69885 * 7 2 1 10 10 C 1.53010 * 115.54971 * 88.54898 * 9 7 2 11 11 S 1.81398 * 109.47089 * 65.26810 * 10 9 7 12 12 O 1.42099 * 110.54265 * 62.17939 * 11 10 9 13 13 O 1.42101 * 110.54152 * 285.42501 * 11 10 9 14 14 N 1.65600 * 104.44619 * 173.80219 * 11 10 9 15 15 C 1.46501 * 119.99939 * 65.00179 * 14 11 10 16 16 H 1.08993 * 110.88447 * 338.80788 * 15 14 11 17 17 C 1.54484 * 110.96794 * 102.61907 * 15 14 11 18 18 N 1.46762 * 105.53024 * 143.32769 * 17 15 14 19 19 C 1.34423 * 111.30478 * 343.36412 * 18 17 15 20 20 O 1.21278 * 124.94291 * 180.28250 * 19 18 17 21 21 C 1.51284 * 110.11301 * 0.02562 * 19 18 17 22 22 C 1.52998 * 117.49687 * 234.21401 * 9 7 2 23 23 C 1.52997 * 117.50102 * 302.87790 * 9 7 2 24 24 H 0.96998 * 120.00239 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46596 * 305.26682 * 10 9 7 26 26 H 1.09002 * 109.46796 * 185.26702 * 10 9 7 27 27 H 0.96998 * 119.99913 * 244.99737 * 14 11 10 28 28 H 1.08997 * 110.24374 * 262.53034 * 17 15 14 29 29 H 1.08998 * 110.24529 * 24.53380 * 17 15 14 30 30 H 0.97004 * 124.35057 * 163.21644 * 18 17 15 31 31 H 1.08992 * 110.48374 * 135.17675 * 21 19 18 32 32 H 1.09004 * 110.48397 * 257.81625 * 21 19 18 33 33 H 1.09003 * 117.49656 * 215.00187 * 22 9 7 34 34 H 1.08991 * 117.50140 * 0.02817 * 22 9 7 35 35 H 1.09001 * 117.49819 * 359.97438 * 23 9 7 36 36 H 1.09003 * 117.50221 * 144.97677 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4425 2.0777 -1.3986 5 1 1.4746 2.6365 0.7534 6 1 3.5726 1.4252 0.6453 7 6 2.0046 -1.1940 -0.0005 8 1 1.4681 -2.1273 0.0856 9 6 3.5067 -1.1967 -0.1211 10 6 4.2749 -1.0998 1.1986 11 16 3.9657 -2.5879 2.1889 12 8 4.4390 -3.7443 1.5122 13 8 2.6612 -2.5505 2.7512 14 7 4.9766 -2.4346 3.4916 15 6 4.7761 -1.3450 4.4501 16 1 4.2017 -0.5342 4.0021 17 6 4.0949 -1.8596 5.7376 18 7 4.7048 -1.1002 6.8354 19 6 5.8487 -0.5116 6.4456 20 8 6.5559 0.1709 7.1561 21 6 6.1289 -0.8298 4.9933 22 6 4.1243 -2.0411 -1.2376 23 6 4.1183 -0.5141 -1.3462 24 1 -0.4850 0.8400 0.0004 25 1 3.9408 -0.2207 1.7497 26 1 5.3419 -1.0156 0.9926 27 1 5.7013 -3.0663 3.6200 28 1 3.0218 -1.6729 5.6969 29 1 4.2887 -2.9244 5.8670 30 1 4.3294 -1.0300 7.7271 31 1 6.4379 0.0684 4.4588 32 1 6.8918 -1.6042 4.9128 33 1 5.0778 -2.5275 -1.0319 34 1 3.4441 -2.5942 -1.8851 35 1 3.4342 -0.0635 -2.0652 36 1 5.0678 0.0043 -1.2120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663235478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:42 Heat of formation + Delta-G solvation = -76.634870 kcal Electronic energy + Delta-G solvation = -21650.808779 eV Core-core repulsion = 18263.137584 eV Total energy + Delta-G solvation = -3387.671195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46825 -37.21662 -37.09219 -36.44255 -35.31676 -34.15441 -32.23293 -29.91877 -28.63635 -27.31314 -25.60529 -22.04716 -21.78552 -20.82400 -19.89184 -18.87652 -17.77512 -17.33131 -16.72387 -16.42049 -15.64951 -15.38151 -15.18672 -14.88630 -14.25942 -14.04142 -13.97941 -13.66114 -13.35548 -13.07133 -12.72367 -12.49296 -12.31419 -11.66217 -11.61794 -11.51200 -11.37248 -11.29857 -11.01753 -10.72816 -10.45441 -10.34107 -10.12072 -9.83240 -9.56737 -9.32930 -9.23224 -8.73323 -8.55507 -6.23623 -4.31739 0.74984 2.37564 3.02911 3.16396 3.20362 3.26910 3.28125 4.09169 4.13610 4.28007 4.33821 4.54961 4.63021 4.74047 4.80805 4.98179 5.06958 5.26110 5.37384 5.42747 5.57750 5.60992 5.82274 5.93732 5.96911 6.10666 6.36838 6.53053 6.57857 6.76730 6.79628 6.93190 7.00141 7.52337 8.01391 8.29733 8.81696 9.37225 10.87642 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.005956 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.500854 B = 4699.797092 C = 5194.114124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.000 4.000 10 C -0.577 4.577 11 S 2.611 3.389 12 O -0.963 6.963 13 O -0.934 6.934 14 N -1.120 6.120 15 C 0.142 3.858 16 H 0.114 0.886 17 C 0.083 3.917 18 N -0.728 5.728 19 C 0.522 3.478 20 O -0.537 6.537 21 C -0.166 4.166 22 C -0.176 4.176 23 C -0.185 4.185 24 H 0.268 0.732 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.414 0.586 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.412 0.588 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -2.004 8.288 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.547 4.547 8 H 0.105 0.895 9 C -0.003 4.003 10 C -0.709 4.709 11 S 2.706 3.294 12 O -0.953 6.953 13 O -0.924 6.924 14 N -0.875 5.875 15 C 0.033 3.967 16 H 0.131 0.869 17 C -0.044 4.044 18 N -0.384 5.384 19 C 0.308 3.692 20 O -0.414 6.414 21 C -0.207 4.207 22 C -0.214 4.214 23 C -0.223 4.223 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.128 0.872 27 H 0.248 0.752 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.250 0.750 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.571 -2.161 8.385 13.664 hybrid contribution 0.818 1.362 0.285 1.614 sum 11.389 -0.800 8.670 14.335 Atomic orbital electron populations 1.69891 1.06403 1.27391 1.47900 1.24953 0.94523 0.98958 0.93172 0.86944 0.80649 0.83509 0.78860 1.20092 1.21673 1.18119 1.20331 0.85907 0.95510 1.52978 0.89485 1.18857 0.94902 1.02769 0.83739 1.30318 1.07478 1.20373 1.12703 1.05161 0.73808 0.76807 0.73593 1.93538 1.81411 1.46057 1.74336 1.93599 1.36333 1.86774 1.75689 1.56163 1.50456 1.39524 1.41399 1.21511 0.95726 0.89636 0.89851 0.86854 1.22712 0.99648 0.96685 0.85321 1.46258 1.25211 1.52109 1.14854 1.20769 0.80494 0.78171 0.89790 1.90762 1.51263 1.39119 1.60269 1.22749 0.98870 1.04967 0.94146 1.23032 1.01479 0.92878 1.03982 1.22994 1.01138 0.95270 1.02929 0.92227 0.85618 0.87201 0.75242 0.88395 0.89928 0.74975 0.87037 0.86816 0.89970 0.88599 0.88893 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.43 0.77 -24.96 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 20.05 24.96 -169.99 -4.24 15.81 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.30 5.68 56.52 0.32 -4.98 16 7 C -0.51 -13.52 8.77 -34.44 -0.30 -13.83 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.00 0.00 0.79 -155.66 -0.12 -0.12 16 10 C -0.58 -10.01 5.44 37.16 0.20 -9.81 16 11 S 2.61 44.18 5.12 -107.50 -0.55 43.63 16 12 O -0.96 -18.35 18.08 -57.54 -1.04 -19.39 16 13 O -0.93 -19.44 17.49 -57.54 -1.01 -20.45 16 14 N -1.12 -12.38 5.45 -3.51 -0.02 -12.40 16 15 C 0.14 1.44 3.59 -66.30 -0.24 1.20 16 16 H 0.11 1.16 7.49 -51.93 -0.39 0.77 16 17 C 0.08 0.78 7.52 -3.12 -0.02 0.76 16 18 N -0.73 -6.78 6.24 -59.20 -0.37 -7.15 16 19 C 0.52 5.99 8.43 -10.86 -0.09 5.89 16 20 O -0.54 -8.28 18.03 5.56 0.10 -8.18 16 21 C -0.17 -1.47 6.59 -26.75 -0.18 -1.65 16 22 C -0.18 -3.42 9.96 -26.69 -0.27 -3.69 16 23 C -0.18 -3.61 7.67 -26.69 -0.20 -3.82 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.13 2.11 6.13 -51.93 -0.32 1.79 16 26 H 0.11 1.49 8.09 -51.92 -0.42 1.07 16 27 H 0.41 3.50 8.67 -34.47 -0.30 3.20 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.41 3.17 8.96 -40.82 -0.37 2.81 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.09 1.92 7.34 -51.93 -0.38 1.54 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 313.17 15.07 4.72 4.72 Total: -1.00 -35.28 313.17 -7.71 -42.99 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.75 Total: 8.10 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.32 Total: -22.73 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.39 Total: -44.51 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.95 Total: -48.02 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.24 Total: 15.81 kcal Atomic # 16 Polarization: 44.18 SS G_CDS: -0.55 Total: 43.63 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.28 -7.71 -42.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663235478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.642 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds