Wall clock time and date at job start Tue Mar 31 2020 03:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99757 * 2 1 4 4 H 1.48499 * 109.47426 * 272.55529 * 3 2 1 5 5 H 1.48505 * 109.47412 * 32.55694 * 3 2 1 6 6 H 1.48500 * 109.47190 * 152.55431 * 3 2 1 7 7 C 1.37875 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00184 * 354.69303 * 7 2 1 9 9 C 1.50699 * 119.99771 * 174.69885 * 7 2 1 10 10 C 1.53010 * 115.54971 * 88.54898 * 9 7 2 11 11 S 1.81398 * 109.47089 * 65.26810 * 10 9 7 12 12 O 1.42099 * 110.54265 * 62.17939 * 11 10 9 13 13 O 1.42101 * 110.54152 * 285.42501 * 11 10 9 14 14 N 1.65600 * 104.44619 * 173.80219 * 11 10 9 15 15 C 1.46501 * 119.99939 * 65.00179 * 14 11 10 16 16 H 1.08993 * 110.88447 * 338.80788 * 15 14 11 17 17 C 1.54484 * 110.96794 * 102.61907 * 15 14 11 18 18 N 1.46762 * 105.53024 * 143.32769 * 17 15 14 19 19 C 1.34423 * 111.30478 * 343.36412 * 18 17 15 20 20 O 1.21278 * 124.94291 * 180.28250 * 19 18 17 21 21 C 1.51284 * 110.11301 * 0.02562 * 19 18 17 22 22 C 1.52998 * 117.49687 * 234.21401 * 9 7 2 23 23 C 1.52997 * 117.50102 * 302.87790 * 9 7 2 24 24 H 0.96998 * 120.00239 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46596 * 305.26682 * 10 9 7 26 26 H 1.09002 * 109.46796 * 185.26702 * 10 9 7 27 27 H 0.96998 * 119.99913 * 244.99737 * 14 11 10 28 28 H 1.08997 * 110.24374 * 262.53034 * 17 15 14 29 29 H 1.08998 * 110.24529 * 24.53380 * 17 15 14 30 30 H 0.97004 * 124.35057 * 163.21644 * 18 17 15 31 31 H 1.08992 * 110.48374 * 135.17675 * 21 19 18 32 32 H 1.09004 * 110.48397 * 257.81625 * 21 19 18 33 33 H 1.09003 * 117.49656 * 215.00187 * 22 9 7 34 34 H 1.08991 * 117.50140 * 0.02817 * 22 9 7 35 35 H 1.09001 * 117.49819 * 359.97438 * 23 9 7 36 36 H 1.09003 * 117.50221 * 144.97677 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4425 2.0777 -1.3986 5 1 1.4746 2.6365 0.7534 6 1 3.5726 1.4252 0.6453 7 6 2.0046 -1.1940 -0.0005 8 1 1.4681 -2.1273 0.0856 9 6 3.5067 -1.1967 -0.1211 10 6 4.2749 -1.0998 1.1986 11 16 3.9657 -2.5879 2.1889 12 8 4.4390 -3.7443 1.5122 13 8 2.6612 -2.5505 2.7512 14 7 4.9766 -2.4346 3.4916 15 6 4.7761 -1.3450 4.4501 16 1 4.2017 -0.5342 4.0021 17 6 4.0949 -1.8596 5.7376 18 7 4.7048 -1.1002 6.8354 19 6 5.8487 -0.5116 6.4456 20 8 6.5559 0.1709 7.1561 21 6 6.1289 -0.8298 4.9933 22 6 4.1243 -2.0411 -1.2376 23 6 4.1183 -0.5141 -1.3462 24 1 -0.4850 0.8400 0.0004 25 1 3.9408 -0.2207 1.7497 26 1 5.3419 -1.0156 0.9926 27 1 5.7013 -3.0663 3.6200 28 1 3.0218 -1.6729 5.6969 29 1 4.2887 -2.9244 5.8670 30 1 4.3294 -1.0300 7.7271 31 1 6.4379 0.0684 4.4588 32 1 6.8918 -1.6042 4.9128 33 1 5.0778 -2.5275 -1.0319 34 1 3.4441 -2.5942 -1.8851 35 1 3.4342 -0.0635 -2.0652 36 1 5.0678 0.0043 -1.2120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663235478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:41 Heat of formation + Delta-G solvation = -108.139338 kcal Electronic energy + Delta-G solvation = -21652.174915 eV Core-core repulsion = 18263.137584 eV Total energy + Delta-G solvation = -3389.037331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30717 -38.80819 -38.12694 -37.79121 -36.76317 -35.07131 -34.25995 -30.71853 -30.05438 -28.13011 -27.56606 -23.31442 -22.87830 -21.64420 -21.39086 -20.29158 -18.79559 -18.56013 -18.32349 -17.40426 -16.93876 -16.83665 -16.56733 -16.01419 -15.56120 -15.27383 -14.90559 -14.79324 -14.66928 -14.49189 -14.09831 -13.88447 -13.20519 -13.16407 -12.92097 -12.89322 -12.75025 -12.65220 -12.40644 -12.34066 -12.00990 -11.75147 -11.66344 -11.15556 -10.93341 -10.69939 -10.60112 -10.16006 -10.09950 -8.29069 -6.42102 -0.56718 1.38808 1.39814 1.52449 1.52717 1.93998 2.38047 2.40897 2.89331 3.03834 3.18969 3.31495 3.42018 3.48213 3.79186 3.89335 3.92197 4.20060 4.32130 4.39525 4.43055 4.60404 4.67800 4.71922 4.89049 4.90099 5.08220 5.09348 5.25516 5.49159 5.65755 5.76058 5.99243 6.14941 6.23330 6.70089 7.19919 7.30741 8.86847 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.005956 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.500854 B = 4699.797092 C = 5194.114124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.208 1.208 7 C -0.511 4.511 8 H 0.030 0.970 9 C -0.032 4.032 10 C -0.577 4.577 11 S 2.622 3.378 12 O -0.989 6.989 13 O -0.986 6.986 14 N -1.096 6.096 15 C 0.134 3.866 16 H 0.116 0.884 17 C 0.079 3.921 18 N -0.718 5.718 19 C 0.516 3.484 20 O -0.582 6.582 21 C -0.153 4.153 22 C -0.174 4.174 23 C -0.172 4.172 24 H 0.267 0.733 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.430 0.570 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.418 0.582 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.792 -0.933 8.513 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.753 3.247 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.129 1.129 7 C -0.548 4.548 8 H 0.048 0.952 9 C -0.034 4.034 10 C -0.709 4.709 11 S 2.719 3.281 12 O -0.979 6.979 13 O -0.975 6.975 14 N -0.856 5.856 15 C 0.025 3.975 16 H 0.133 0.867 17 C -0.047 4.047 18 N -0.373 5.373 19 C 0.303 3.697 20 O -0.463 6.463 21 C -0.195 4.195 22 C -0.211 4.211 23 C -0.210 4.210 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.180 0.820 27 H 0.268 0.732 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.257 0.743 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.283 -1.152 8.608 16.716 hybrid contribution -0.405 0.875 0.219 0.989 sum 13.878 -0.276 8.828 16.450 Atomic orbital electron populations 1.70069 1.08782 1.28354 1.50793 1.25927 0.95205 1.03308 0.92844 0.86030 0.81349 0.77862 0.79507 1.19407 1.22481 1.12934 1.20456 0.89236 0.93270 1.51818 0.95171 1.18791 0.92323 1.05790 0.86541 1.30215 1.10056 1.20487 1.10138 1.04446 0.73230 0.76440 0.74016 1.93496 1.81617 1.47436 1.75394 1.93548 1.39797 1.87375 1.76810 1.55488 1.50010 1.40307 1.39795 1.21687 0.96897 0.89263 0.89647 0.86659 1.22755 0.99364 0.97397 0.85161 1.46261 1.24620 1.51238 1.15210 1.21207 0.80294 0.77453 0.90697 1.90745 1.52705 1.41219 1.61607 1.22752 0.98397 1.06353 0.91975 1.23108 1.02238 0.93386 1.02389 1.23093 1.02185 0.95287 1.00452 0.92385 0.84663 0.81970 0.73247 0.88897 0.88658 0.74263 0.85398 0.84399 0.86709 0.90455 0.90615 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 2 C 0.03 1.45 5.47 84.65 0.46 1.91 16 3 Si 0.93 40.00 24.96 68.60 1.71 41.71 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.21 -7.22 5.68 99.48 0.57 -6.66 16 7 C -0.51 -27.73 8.77 25.60 0.22 -27.51 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C -0.03 -1.30 0.79 -52.93 -0.04 -1.34 16 10 C -0.58 -17.62 5.44 71.99 0.39 -17.23 16 11 S 2.62 83.82 5.12 -56.49 -0.29 83.53 16 12 O -0.99 -36.03 18.08 -127.65 -2.31 -38.34 16 13 O -0.99 -41.43 17.49 -127.65 -2.23 -43.67 16 14 N -1.10 -20.43 5.45 -165.01 -0.90 -21.33 16 15 C 0.13 2.27 3.59 46.05 0.17 2.43 16 16 H 0.12 1.97 7.49 -2.39 -0.02 1.95 16 17 C 0.08 1.33 7.52 86.83 0.65 1.98 16 18 N -0.72 -11.95 6.24 -459.80 -2.87 -14.82 16 19 C 0.52 10.59 8.43 87.90 0.74 11.33 16 20 O -0.58 -17.06 18.03 -3.02 -0.05 -17.12 16 21 C -0.15 -2.09 6.59 30.58 0.20 -1.89 16 22 C -0.17 -6.32 9.96 30.62 0.30 -6.02 16 23 C -0.17 -6.04 7.67 30.62 0.23 -5.80 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.14 3.90 6.13 -2.39 -0.01 3.88 16 26 H 0.16 3.24 8.09 -2.39 -0.02 3.22 16 27 H 0.43 5.51 8.67 -96.75 -0.84 4.67 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.37 8.07 -2.39 -0.02 1.35 16 30 H 0.42 5.85 8.96 -92.71 -0.83 5.02 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.14 1.25 7.90 -2.39 -0.02 1.23 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.40 16 34 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 2.93 7.34 -2.39 -0.02 2.91 16 36 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -81.86 313.17 -3.99 -85.85 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.69 Total: 23.73 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.34 Total: -42.13 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.47 Total: -93.57 kcal Atomic # 8 Polarization: -94.53 SS G_CDS: -4.59 Total: -99.12 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.71 Total: 41.71 kcal Atomic # 16 Polarization: 83.82 SS G_CDS: -0.29 Total: 83.53 kcal Total: -81.86 -3.99 -85.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663235478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.291 kcal (2) G-P(sol) polarization free energy of solvation -81.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds