Wall clock time and date at job start Tue Mar 31 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38317 * 119.88231 * 2 1 4 4 C 1.38027 * 120.11855 * 179.97438 * 3 2 1 5 5 C 1.39301 * 119.88210 * 0.02562 * 4 3 2 6 6 C 1.48469 * 120.11554 * 180.02562 * 5 4 3 7 7 N 1.34039 * 126.67414 * 359.97438 * 6 5 4 8 8 N 1.28991 * 107.26771 * 180.02562 * 7 6 5 9 9 N 1.28734 * 108.94102 * 359.97438 * 8 7 6 10 10 C 1.46502 * 125.33900 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47307 * 89.97570 * 10 9 8 12 12 O 1.21207 * 119.99488 * 0.02562 * 11 10 9 13 13 O 1.34305 * 120.00133 * 179.97438 * 11 10 9 14 14 C 1.34919 * 117.00359 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99235 * 0.02562 * 14 13 11 16 16 C 1.38743 * 120.00252 * 180.02562 * 14 13 11 17 17 N 1.31440 * 119.99902 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00335 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47116 * 89.99889 * 18 16 14 20 20 H 1.48497 * 109.47259 * 210.00336 * 18 16 14 21 21 H 1.48507 * 109.46619 * 330.00315 * 18 16 14 22 22 N 1.28874 * 109.31863 * 0.02562 * 9 8 7 23 23 C 1.39296 * 119.76430 * 0.26716 * 5 4 3 24 24 C 1.38029 * 119.88385 * 359.45830 * 23 5 4 25 25 H 1.09000 * 109.47130 * 89.99971 * 1 2 3 26 26 H 1.08999 * 109.46969 * 209.99632 * 1 2 3 27 27 H 1.08995 * 109.47212 * 329.99998 * 1 2 3 28 28 H 1.07997 * 119.94006 * 359.95263 * 3 2 1 29 29 H 1.08007 * 120.06022 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47191 * 209.97783 * 10 9 8 31 31 H 1.09000 * 109.46929 * 329.97616 * 10 9 8 32 32 H 0.97009 * 119.99869 * 179.97438 * 17 16 14 33 33 H 1.08006 * 120.05962 * 179.72541 * 23 5 4 34 34 H 1.07993 * 119.94703 * 180.27374 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1993 0.0000 4 6 3.5764 1.2050 0.0005 5 6 4.2754 0.0000 0.0005 6 6 5.7601 0.0001 0.0017 7 7 6.5606 1.0752 0.0023 8 7 7.7772 0.6467 0.0027 9 7 7.7668 -0.6406 0.0029 10 6 8.9550 -1.4976 0.0039 11 6 9.3618 -1.7908 1.4250 12 8 8.7223 -1.3300 2.3457 13 8 10.4323 -2.5636 1.6713 14 6 10.7424 -2.7863 2.9654 15 1 10.1390 -2.3504 3.7479 16 6 11.8363 -3.5752 3.2908 17 7 12.1380 -3.7925 4.5515 18 14 12.8804 -4.3285 1.9373 19 1 13.9761 -3.3925 1.5784 20 1 13.4602 -5.6097 2.4144 21 1 12.0349 -4.5820 0.7431 22 7 6.5472 -1.0571 0.0021 23 6 3.5764 -1.2049 -0.0056 24 6 2.1962 -1.1993 -0.0004 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6532 2.1329 -0.0008 29 1 4.1135 2.1420 0.0010 30 1 8.7293 -2.4322 -0.5096 31 1 9.7705 -0.9886 -0.5098 32 1 12.9027 -4.3444 4.7790 33 1 4.1136 -2.1419 -0.0102 34 1 1.6533 -2.1328 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007711240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:00 Heat of formation + Delta-G solvation = 54.468850 kcal Electronic energy + Delta-G solvation = -21144.120702 eV Core-core repulsion = 17658.983391 eV Total energy + Delta-G solvation = -3485.137311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.47692 -41.41725 -40.26132 -37.88211 -36.25542 -34.96084 -34.61820 -33.30105 -31.96796 -30.88304 -28.23717 -27.55250 -25.04388 -24.56479 -23.34543 -22.18368 -22.00297 -20.34059 -19.46093 -18.94225 -17.96956 -17.72367 -17.18560 -16.71981 -16.21547 -16.15574 -15.78583 -15.11577 -14.75359 -14.68170 -14.58230 -14.39835 -14.20744 -14.16190 -13.42466 -13.28854 -13.13051 -12.95607 -12.50429 -12.44357 -12.37779 -12.31832 -12.25219 -11.93348 -11.86279 -11.80548 -11.32929 -10.90912 -9.94459 -9.45378 -8.62037 -6.52988 -0.33856 0.03783 0.42441 0.60578 1.05678 1.31282 1.35967 1.46969 1.56825 2.07215 2.25213 2.60531 2.81415 2.83658 3.06038 3.73175 3.85682 3.94436 3.96393 4.00205 4.05512 4.28824 4.46315 4.47729 4.54069 4.80866 4.83954 4.89136 4.92140 5.11901 5.28406 5.31782 5.40781 5.48413 5.62999 5.77001 5.97612 6.32101 6.69728 7.09980 7.30486 8.50325 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.033166 B = 0.003039 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.027129 B = 9212.439450 C = 9528.719101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.046 4.046 6 C 0.205 3.795 7 N -0.292 5.292 8 N -0.059 5.059 9 N -0.122 5.122 10 C 0.153 3.847 11 C 0.396 3.604 12 O -0.573 6.573 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.913 5.913 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.237 1.237 22 N -0.302 5.302 23 C -0.087 4.087 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.195 0.805 31 H 0.199 0.801 32 H 0.293 0.707 33 H 0.128 0.872 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 4.105 -16.419 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.103 4.103 5 C -0.050 4.050 6 C -0.074 4.074 7 N -0.163 5.163 8 N -0.052 5.052 9 N -0.035 5.035 10 C 0.033 3.967 11 C 0.241 3.759 12 O -0.469 6.469 13 O -0.140 6.140 14 C -0.488 4.488 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.551 5.551 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.159 1.159 22 N -0.152 5.152 23 C -0.107 4.107 24 C -0.143 4.143 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.174 0.826 29 H 0.151 0.849 30 H 0.212 0.788 31 H 0.216 0.784 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.559 4.328 -16.006 24.151 hybrid contribution 0.445 -0.360 0.745 0.940 sum -17.114 3.968 -15.261 23.271 Atomic orbital electron populations 1.20914 0.88395 1.04162 1.03684 1.20525 0.98113 0.92570 0.95542 1.21291 0.92560 0.99429 1.00743 1.21301 0.95223 0.96645 0.97135 1.17475 0.83271 0.96203 1.08019 1.24156 0.97376 0.84289 1.01625 1.75917 0.94972 1.26131 1.19299 1.78835 1.16934 0.94442 1.14985 1.49601 1.06097 1.04617 1.43148 1.21863 0.84204 0.98887 0.91766 1.23773 0.80514 0.79163 0.92415 1.90710 1.55000 1.52822 1.48343 1.83441 1.41905 1.58891 1.29774 1.20258 1.14927 1.34473 0.79166 0.92894 1.25691 0.97090 0.95364 1.00156 1.69705 1.28768 1.37475 1.19181 0.85014 0.78232 0.78014 0.78094 1.18152 1.19297 1.15939 1.74828 0.90730 1.27474 1.22171 1.21294 0.95329 0.96622 0.97471 1.21275 0.92585 0.99481 1.00919 0.89497 0.90359 0.90145 0.82572 0.84915 0.78842 0.78418 0.89735 0.85430 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.07 -1.03 5.88 -19.83 -0.12 -1.14 16 3 C -0.12 -2.08 9.68 22.24 0.22 -1.87 16 4 C -0.08 -1.93 9.70 22.48 0.22 -1.71 16 5 C -0.05 -1.31 5.88 -20.04 -0.12 -1.42 16 6 C 0.20 7.07 7.94 137.39 1.09 8.17 16 7 N -0.29 -10.71 12.23 -52.18 -0.64 -11.35 16 8 N -0.06 -2.19 13.23 37.02 0.49 -1.70 16 9 N -0.12 -4.26 3.48 -190.85 -0.66 -4.92 16 10 C 0.15 4.34 7.19 85.63 0.62 4.95 16 11 C 0.40 17.64 7.97 71.24 0.57 18.21 16 12 O -0.57 -31.85 15.67 20.78 0.33 -31.53 16 13 O -0.23 -11.39 8.58 14.93 0.13 -11.26 16 14 C -0.41 -24.55 10.10 67.94 0.69 -23.87 16 15 H 0.05 3.68 7.09 -2.91 -0.02 3.66 16 16 C 0.02 1.01 5.49 84.87 0.47 1.47 16 17 N -0.91 -53.95 13.96 21.62 0.30 -53.65 16 18 Si 0.99 40.39 28.62 68.60 1.96 42.36 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.24 -8.77 7.11 99.48 0.71 -8.07 16 22 N -0.30 -10.74 11.85 -52.13 -0.62 -11.35 16 23 C -0.09 -2.10 9.70 22.47 0.22 -1.88 16 24 C -0.12 -2.22 9.68 22.24 0.22 -2.01 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 27 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.13 3.05 7.89 -2.91 -0.02 3.03 16 30 H 0.19 3.75 8.14 -2.39 -0.02 3.73 16 31 H 0.20 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.29 15.49 8.31 -92.70 -0.77 14.72 16 33 H 0.13 3.11 7.88 -2.91 -0.02 3.09 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -81.88 316.04 7.20 -74.68 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.14 Total: 10.09 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.77 Total: -1.37 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.13 Total: -82.97 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: 0.45 Total: -42.79 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.96 Total: 42.36 kcal Total: -81.88 7.20 -74.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007711240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.145 kcal (2) G-P(sol) polarization free energy of solvation -81.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds