Wall clock time and date at job start Tue Mar 31 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 116.99903 * 2 1 4 4 O 1.20826 * 120.00367 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00092 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47294 * 180.02562 * 5 3 2 7 7 N 1.30214 * 120.00679 * 359.97438 * 6 5 3 8 8 N 1.39516 * 122.65267 * 179.97438 * 7 6 5 9 9 C 1.36669 * 119.11799 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00204 * 179.97438 * 9 8 7 11 11 C 1.39148 * 120.00098 * 359.97438 * 9 8 7 12 12 N 1.31208 * 119.99785 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99972 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47608 * 60.00154 * 13 11 9 15 15 H 1.48504 * 109.47140 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47279 * 299.99995 * 13 11 9 17 17 C 1.34924 * 121.76679 * 359.97438 * 8 7 6 18 18 O 1.21769 * 120.60513 * 179.97438 * 17 8 7 19 19 C 1.46752 * 118.78433 * 0.02562 * 17 8 7 20 20 C 1.39414 * 121.94944 * 180.02562 * 19 17 8 21 21 C 1.37814 * 119.53745 * 179.21223 * 20 19 17 22 22 C 1.38897 * 120.70947 * 0.76825 * 21 20 19 23 23 C 1.37743 * 120.77350 * 359.47925 * 22 21 20 24 24 C 1.39625 * 119.56286 * 0.02562 * 23 22 21 25 25 H 1.09006 * 109.47532 * 60.00248 * 1 2 3 26 26 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47220 * 299.99917 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99668 * 5 3 2 29 29 H 1.09000 * 109.47318 * 59.99266 * 5 3 2 30 30 H 0.97004 * 119.99799 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.23005 * 359.97438 * 20 19 17 32 32 H 1.08001 * 119.64623 * 180.22469 * 21 20 19 33 33 H 1.07994 * 119.61298 * 179.50204 * 22 21 20 34 34 H 1.08004 * 120.22117 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9936 2.7200 0.0002 7 7 3.0969 3.6642 0.0007 8 7 3.4303 5.0189 0.0019 9 6 2.4298 5.9500 0.0029 10 1 2.6717 7.0026 0.0043 11 6 1.0995 5.5419 0.0021 12 7 0.8057 4.2631 0.0009 13 14 -0.2678 6.8145 0.0027 14 1 -0.1530 7.6652 -1.2090 15 1 -1.5841 6.1268 0.0023 16 1 -0.1537 7.6632 1.2159 17 6 4.7139 5.4345 0.0032 18 8 4.9808 6.6226 0.0038 19 6 5.7824 4.4286 0.0027 20 6 7.1304 4.7842 0.0045 21 6 8.0931 3.7981 0.0204 22 6 7.7343 2.4563 0.0187 23 6 6.4089 2.0813 0.0117 24 6 5.4154 3.0623 0.0059 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9564 0.7806 0.8892 29 1 3.9557 0.7808 -0.8907 30 1 -0.1217 3.9786 0.0007 31 1 7.4182 5.8251 0.0059 32 1 9.1379 4.0717 0.0255 33 1 8.5034 1.6982 0.0232 34 1 6.1399 1.0352 0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034309470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:26 Heat of formation + Delta-G solvation = 4.718919 kcal Electronic energy + Delta-G solvation = -22952.302048 eV Core-core repulsion = 19432.714666 eV Total energy + Delta-G solvation = -3519.587381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96108 -39.34708 -37.43544 -36.20643 -35.25730 -33.71753 -31.87868 -30.52291 -29.82358 -28.80860 -26.85284 -25.37045 -23.12587 -22.79336 -21.08874 -19.84660 -18.84778 -17.71515 -16.76802 -16.47143 -15.87059 -15.65774 -15.19261 -14.60422 -14.52607 -14.14910 -13.97010 -13.74111 -13.47396 -13.23139 -12.59358 -12.37569 -12.13375 -11.86746 -11.79438 -11.52931 -11.31335 -11.30788 -10.81679 -10.78085 -10.69709 -10.47828 -10.02594 -9.77312 -9.45498 -9.07985 -8.56438 -8.38542 -8.08673 -7.47282 -6.27734 -4.02662 1.44761 1.56382 3.02167 3.10745 3.11747 3.13749 3.25274 3.31951 3.67566 3.73427 4.15616 4.64465 5.00233 5.20345 5.23993 5.31692 5.37615 5.45528 5.57561 5.58358 5.63883 5.83440 5.84476 5.88924 5.94922 6.27702 6.34179 6.50470 6.63394 6.93199 7.02652 7.04861 7.25504 7.32665 7.45109 7.83938 8.26852 8.66366 9.02636 9.35786 9.65037 10.45503 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.008524 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.883526 B = 3284.216088 C = 5510.639215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.385 6.385 3 C 0.395 3.605 4 O -0.365 6.365 5 C -0.015 4.015 6 C -0.016 4.016 7 N -0.107 5.107 8 N -0.217 5.217 9 C -0.293 4.293 10 H 0.127 0.873 11 C 0.031 3.969 12 N -0.704 5.704 13 Si 0.926 3.074 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 C 0.436 3.564 18 O -0.577 6.577 19 C -0.138 4.138 20 C -0.055 4.055 21 C -0.153 4.153 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.052 4.052 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.273 0.727 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 -10.392 0.008 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.305 6.305 3 C 0.230 3.770 4 O -0.239 6.239 5 C -0.054 4.054 6 C -0.186 4.186 7 N 0.070 4.930 8 N -0.017 5.017 9 C -0.426 4.426 10 H 0.144 0.856 11 C -0.188 4.188 12 N -0.332 5.332 13 Si 0.750 3.250 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.193 1.193 17 C 0.236 3.764 18 O -0.461 6.461 19 C -0.145 4.145 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.058 4.058 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.437 -9.390 0.008 9.499 hybrid contribution 0.125 0.398 0.003 0.417 sum 1.562 -8.992 0.011 9.126 Atomic orbital electron populations 1.22976 0.77848 1.02002 1.02177 1.86422 1.22187 1.35521 1.86328 1.23979 0.92328 0.82458 0.78191 1.91445 1.64784 1.31653 1.36051 1.19524 0.89272 0.92044 1.04579 1.22475 0.88690 0.94876 1.12564 1.76579 1.21940 0.86437 1.08088 1.45710 1.05556 1.03089 1.47367 1.20186 0.84314 0.89318 1.48800 0.85562 1.25822 0.98669 0.97184 0.97121 1.70332 1.19698 1.12079 1.31094 0.86007 0.79160 0.80124 0.79664 1.19249 1.20315 1.19256 1.18449 0.83164 0.88986 0.85803 1.90661 1.82264 1.16851 1.56371 1.19916 0.94495 0.92374 1.07710 1.20902 0.91040 0.99614 0.95839 1.20926 0.98648 0.92856 1.04799 1.20982 0.95783 0.95842 1.00707 1.20977 0.92269 0.98319 1.02239 1.19298 0.92980 0.92677 1.00833 0.92525 0.89517 0.92535 0.87827 0.87814 0.91503 0.85557 0.86554 0.86622 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.65 16 2 O -0.38 -6.10 10.56 -39.23 -0.41 -6.52 16 3 C 0.39 7.34 7.95 36.01 0.29 7.62 16 4 O -0.37 -8.27 9.84 -18.75 -0.18 -8.46 16 5 C -0.01 -0.24 5.03 -29.03 -0.15 -0.38 16 6 C -0.02 -0.35 6.99 -80.07 -0.56 -0.91 16 7 N -0.11 -2.76 6.28 34.90 0.22 -2.55 16 8 N -0.22 -6.06 3.62 -12.12 -0.04 -6.11 16 9 C -0.29 -8.18 9.61 -15.06 -0.14 -8.33 16 10 H 0.13 3.54 7.11 -52.49 -0.37 3.17 16 11 C 0.03 0.79 5.49 -17.48 -0.10 0.69 16 12 N -0.70 -18.30 7.74 55.50 0.43 -17.87 16 13 Si 0.93 19.53 29.55 -169.99 -5.02 14.51 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 C 0.44 11.89 7.64 -12.75 -0.10 11.79 16 18 O -0.58 -16.79 16.11 5.13 0.08 -16.71 16 19 C -0.14 -3.17 5.90 -104.79 -0.62 -3.79 16 20 C -0.05 -1.08 9.66 -39.30 -0.38 -1.46 16 21 C -0.15 -2.42 10.01 -39.49 -0.40 -2.81 16 22 C -0.11 -1.66 10.01 -39.52 -0.40 -2.06 16 23 C -0.12 -1.88 9.51 -39.24 -0.37 -2.25 16 24 C -0.05 -1.05 5.89 -104.93 -0.62 -1.67 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.10 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.27 6.67 8.13 -40.82 -0.33 6.34 16 31 H 0.13 2.45 7.80 -52.49 -0.41 2.04 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.53 7.27 -52.48 -0.38 1.15 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -32.96 296.38 -6.19 -39.15 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.25 Total: 1.98 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.47 Total: -1.90 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.60 Total: -26.52 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.52 Total: -31.68 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.96 -6.19 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034309470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.867 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds