Wall clock time and date at job start Tue Mar 31 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48503 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47297 * 300.00224 * 3 2 1 6 6 H 1.48500 * 109.46943 * 60.00332 * 3 2 1 7 7 C 1.38818 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00505 * 197.38019 * 7 2 1 9 9 N 1.36937 * 119.99568 * 17.37628 * 7 2 1 10 10 C 1.46931 * 120.63011 * 207.68219 * 9 7 2 11 11 C 1.53187 * 108.77447 * 233.58660 * 10 9 7 12 12 C 1.53040 * 109.31557 * 305.36301 * 11 10 9 13 13 C 1.50699 * 109.46047 * 181.38619 * 12 11 10 14 14 N 1.27932 * 124.24232 * 300.02208 * 13 12 11 15 15 C 1.34657 * 117.85144 * 179.97438 * 14 13 12 16 16 C 1.40966 * 129.68930 * 180.02562 * 15 14 13 17 17 C 1.36183 * 120.42375 * 180.02562 * 16 15 14 18 18 C 1.38789 * 120.77785 * 359.97438 * 17 16 15 19 19 C 1.37653 * 120.07021 * 0.02562 * 18 17 16 20 20 C 1.39342 * 119.95152 * 0.02562 * 19 18 17 21 21 S 1.70654 * 124.23747 * 120.00398 * 13 12 11 22 22 C 1.53047 * 109.53608 * 61.36519 * 12 11 10 23 23 C 1.46929 * 120.63160 * 27.65752 * 9 7 2 24 24 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.58545 * 113.79787 * 10 9 7 26 26 H 1.08998 * 109.58605 * 353.37187 * 10 9 7 27 27 H 1.09007 * 109.49792 * 185.40988 * 11 10 9 28 28 H 1.09004 * 109.52939 * 65.33406 * 11 10 9 29 29 H 1.08994 * 109.45824 * 301.35871 * 12 11 10 30 30 H 1.07994 * 119.78730 * 359.97438 * 16 15 14 31 31 H 1.07992 * 119.61095 * 179.97438 * 17 16 15 32 32 H 1.08005 * 119.96423 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.02389 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.49787 * 58.58755 * 22 12 11 35 35 H 1.08998 * 109.49598 * 178.68521 * 22 12 11 36 36 H 1.08998 * 109.58910 * 246.19459 * 23 9 7 37 37 H 1.08994 * 109.58428 * 6.62815 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2788 9 7 1.3725 -2.3608 -0.3552 10 6 1.8193 -3.6549 0.1783 11 6 2.0743 -4.6093 -0.9925 12 6 0.8187 -4.6885 -1.8638 13 6 1.0544 -5.6528 -2.9976 14 7 1.9726 -5.5180 -3.8781 15 6 2.0681 -6.4590 -4.8367 16 6 2.9722 -6.5586 -5.9136 17 6 2.8972 -7.6045 -6.7825 18 6 1.9331 -8.5905 -6.6256 19 6 1.0370 -8.5192 -5.5831 20 6 1.0979 -7.4557 -4.6848 21 16 0.1300 -7.0617 -3.2677 22 6 0.5008 -3.3029 -2.4306 23 6 0.2279 -2.3336 -1.2761 24 1 -0.4850 0.8400 0.0004 25 1 1.0469 -4.0694 0.8261 26 1 2.7400 -3.5180 0.7453 27 1 2.3136 -5.6009 -0.6081 28 1 2.9084 -4.2395 -1.5890 29 1 -0.0204 -5.0352 -1.2607 30 1 3.7285 -5.8001 -6.0510 31 1 3.5963 -7.6676 -7.6032 32 1 1.8853 -9.4140 -7.3227 33 1 0.2868 -9.2866 -5.4620 34 1 1.3494 -2.9447 -3.0134 35 1 -0.3800 -3.3646 -3.0697 36 1 -0.6743 -2.6405 -0.7470 37 1 0.0987 -1.3250 -1.6686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040468327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:09 Heat of formation + Delta-G solvation = 69.609680 kcal Electronic energy + Delta-G solvation = -19916.004446 eV Core-core repulsion = 16977.816905 eV Total energy + Delta-G solvation = -2938.187541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40769 -38.09441 -36.48581 -33.36686 -31.23721 -30.99655 -29.88573 -29.07056 -26.03792 -24.20840 -23.03162 -22.20092 -22.13712 -20.55910 -18.95935 -18.49662 -16.90984 -16.27635 -15.62691 -15.32620 -14.86151 -14.69043 -14.09185 -13.91531 -13.72271 -13.50520 -13.02730 -12.80204 -12.55810 -12.44593 -11.98831 -11.78723 -11.41590 -11.04617 -10.94387 -10.72969 -10.71299 -10.29704 -10.25379 -10.17593 -9.96166 -9.76088 -9.63210 -9.23386 -8.61518 -8.43189 -8.18647 -6.66863 -5.77381 -3.18890 0.41886 1.02098 1.26591 1.76867 2.37025 3.39414 3.47474 3.50001 3.61937 3.95877 4.51694 4.51987 4.73737 4.94759 5.09529 5.18784 5.28937 5.40631 5.44920 5.49644 5.58425 5.73000 5.84888 6.01869 6.11326 6.14738 6.21990 6.29864 6.44367 6.53395 6.59497 6.66538 6.70793 6.78617 7.00183 7.37984 7.65182 7.75810 7.82386 8.46512 9.22818 9.86233 10.42476 11.31418 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003757 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.808386 B = 7450.540666 C = 7846.423441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.009 4.009 13 C 0.128 3.872 14 N -0.467 5.467 15 C 0.091 3.909 16 C -0.068 4.068 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.070 4.070 20 C -0.192 4.192 21 S 0.078 5.922 22 C -0.125 4.125 23 C 0.172 3.828 24 H 0.253 0.747 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -17.387 -11.126 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.159 4.159 12 C -0.032 4.032 13 C -0.157 4.157 14 N -0.179 5.179 15 C -0.030 4.030 16 C -0.088 4.088 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.092 4.092 20 C -0.310 4.310 21 S 0.337 5.663 22 C -0.166 4.166 23 C 0.046 3.954 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.742 -17.206 -10.516 20.179 hybrid contribution 0.935 0.765 -0.768 1.432 sum 1.677 -16.441 -11.284 20.011 Atomic orbital electron populations 1.70035 1.05250 1.25382 1.54127 1.25024 0.95284 0.98402 1.00981 0.86237 0.79438 0.83973 0.77234 1.20236 1.21572 1.21769 1.19236 0.92765 0.84850 1.41103 0.91584 1.44074 1.35837 1.01434 1.50129 1.20903 0.97898 0.86766 0.92422 1.22065 0.96122 0.99388 0.98291 1.20104 0.99925 0.92975 0.90173 1.27337 0.92513 0.97287 0.98581 1.66176 1.21468 1.26822 1.03476 1.19332 0.96922 0.90491 0.96214 1.20418 0.97589 0.98722 0.92115 1.20689 0.98975 0.94114 0.99256 1.21067 0.95363 0.99340 0.97712 1.20316 0.99445 0.95914 0.93547 1.23910 1.02398 1.02410 1.02326 1.83967 1.36208 1.23295 1.22836 1.22265 1.00826 0.93198 1.00333 1.20807 0.88674 0.98284 0.87628 0.93698 0.96265 0.92345 0.93117 0.91064 0.89679 0.84880 0.85024 0.85060 0.85470 0.91386 0.93254 0.96198 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -6.88 9.59 -15.06 -0.14 -7.02 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.83 3.00 -172.32 -0.52 -15.35 16 10 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 11 C -0.12 -2.13 5.32 -26.61 -0.14 -2.27 16 12 C -0.01 -0.16 2.57 -91.73 -0.24 -0.40 16 13 C 0.13 2.10 5.82 -13.90 -0.08 2.02 16 14 N -0.47 -8.14 10.52 -9.08 -0.10 -8.23 16 15 C 0.09 1.39 7.00 -84.97 -0.59 0.80 16 16 C -0.07 -0.84 10.05 -39.29 -0.39 -1.23 16 17 C -0.11 -1.04 9.94 -40.12 -0.40 -1.44 16 18 C -0.11 -1.02 10.04 -39.59 -0.40 -1.41 16 19 C -0.07 -0.74 10.07 -39.38 -0.40 -1.14 16 20 C -0.19 -2.63 6.56 -38.54 -0.25 -2.88 16 21 S 0.08 1.07 23.08 -107.50 -2.48 -1.41 16 22 C -0.13 -2.48 5.33 -26.61 -0.14 -2.62 16 23 C 0.17 4.09 5.31 -3.71 -0.02 4.07 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 27 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -30.62 317.07 -10.96 -41.57 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.92 Total: -2.08 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -3.31 Total: -10.54 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.01 Total: -49.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.62 -10.96 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040468327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.184 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds