Wall clock time and date at job start Tue Mar 31 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48491 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46997 * 300.00438 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00021 * 3 2 1 7 7 C 1.37876 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47443 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47267 * 179.97438 * 10 9 7 12 12 O 1.42100 * 109.47163 * 63.61459 * 11 10 9 13 13 C 1.81404 * 103.00051 * 180.02562 * 11 10 9 14 14 C 1.50704 * 109.46792 * 180.02562 * 13 11 10 15 15 C 1.36133 * 120.17054 * 270.01563 * 14 13 11 16 16 C 1.39328 * 120.98562 * 179.97438 * 15 14 13 17 17 C 1.36126 * 120.99331 * 0.08414 * 16 15 14 18 18 C 1.40505 * 119.65059 * 359.94577 * 17 16 15 19 19 C 1.40543 * 121.29267 * 180.02562 * 18 17 16 20 20 C 1.36084 * 119.65368 * 179.97438 * 19 18 17 21 21 C 1.39378 * 120.99805 * 0.02891 * 20 19 18 22 22 C 1.36090 * 120.99082 * 359.96962 * 21 20 19 23 23 C 1.40497 * 120.17390 * 90.00299 * 14 13 11 24 24 H 0.96999 * 120.00239 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46902 * 59.99799 * 9 7 2 26 26 H 1.09007 * 109.47045 * 300.00311 * 9 7 2 27 27 H 1.09005 * 109.47258 * 60.00440 * 10 9 7 28 28 H 1.08999 * 109.47501 * 300.00213 * 10 9 7 29 29 H 1.08996 * 109.47275 * 60.00335 * 13 11 10 30 30 H 1.09003 * 109.47091 * 299.99920 * 13 11 10 31 31 H 1.08000 * 119.50702 * 359.97438 * 15 14 13 32 32 H 1.08006 * 119.50562 * 180.02562 * 16 15 14 33 33 H 1.07998 * 120.17198 * 180.21619 * 17 16 15 34 34 H 1.08001 * 120.17297 * 359.93649 * 19 18 17 35 35 H 1.08005 * 119.50228 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.50863 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.17272 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3382 -5.2331 0.0002 12 8 0.5853 -5.3459 -1.1996 13 6 2.6649 -6.4702 0.0009 14 6 2.0632 -7.8519 0.0010 15 6 1.7893 -8.4789 1.1779 16 6 1.2325 -9.7559 1.1978 17 6 0.9478 -10.4146 0.0410 18 6 1.2172 -9.7997 -1.1933 19 6 0.9366 -10.4478 -2.4084 20 6 1.2105 -9.8210 -3.5848 21 6 1.7669 -8.5433 -3.6048 22 6 2.0520 -7.8850 -2.4483 23 6 1.7817 -8.4996 -1.2136 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 3.2810 -6.3419 0.8909 30 1 3.2811 -6.3427 -0.8891 31 1 2.0068 -7.9789 2.1102 32 1 1.0246 -10.2309 2.1452 33 1 0.5132 -11.4027 0.0718 34 1 0.5064 -11.4385 -2.4085 35 1 0.9942 -10.3215 -4.5172 36 1 1.9750 -8.0684 -4.5521 37 1 2.4827 -6.8950 -2.4792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097164041.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:10 Heat of formation + Delta-G solvation = -30.241480 kcal Electronic energy + Delta-G solvation = -19382.501307 eV Core-core repulsion = 16407.691143 eV Total energy + Delta-G solvation = -2974.810164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34571 -37.49689 -36.71626 -35.74506 -34.76312 -32.88472 -31.21171 -30.99429 -28.15145 -27.23045 -24.28974 -23.88767 -23.26738 -21.67092 -18.79531 -18.41793 -18.29694 -17.92239 -17.12392 -16.59163 -16.27074 -15.90366 -15.63472 -15.36286 -15.02299 -14.65986 -14.46899 -14.27044 -14.21202 -13.91364 -13.55331 -13.36810 -12.94911 -12.82158 -12.74405 -12.59511 -12.28905 -12.01163 -11.89743 -11.80434 -11.74211 -11.50638 -11.13675 -10.62034 -10.53202 -9.53720 -9.23311 -8.63667 -8.22906 -6.36519 -0.45871 0.08813 0.57165 1.21543 1.38454 1.39452 1.52502 1.84138 2.12786 2.38766 2.90949 3.09143 3.20707 3.52742 3.83617 3.95331 3.96945 4.10079 4.24655 4.28527 4.33969 4.45028 4.47488 4.49972 4.67469 4.73693 4.91885 5.00516 5.04416 5.21490 5.29346 5.37255 5.40624 5.49282 5.49795 5.62422 5.71522 5.75340 5.92726 6.13365 6.15853 6.78595 7.33081 8.88299 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003442 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.727438 B = 8133.203431 C = 8627.659368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.036 3.964 10 C -0.419 4.419 11 S 1.270 4.730 12 O -0.907 6.907 13 C -0.404 4.404 14 C -0.076 4.076 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.075 4.075 24 H 0.265 0.735 25 H -0.027 1.027 26 H 0.024 0.976 27 H 0.141 0.859 28 H 0.057 0.943 29 H 0.171 0.829 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -23.850 4.603 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.002 4.002 10 C -0.557 4.557 11 S 1.473 4.527 12 O -0.902 6.902 13 C -0.539 4.539 14 C -0.078 4.078 15 C -0.126 4.126 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.074 4.074 19 C -0.127 4.127 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.075 4.075 24 H 0.074 0.926 25 H -0.008 1.008 26 H 0.042 0.958 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.188 0.812 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.177 0.823 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.750 -23.858 4.565 24.578 hybrid contribution 1.504 1.739 -2.556 3.439 sum 5.254 -22.119 2.009 22.823 Atomic orbital electron populations 1.70109 1.07899 1.27966 1.51332 1.26058 0.95834 1.03595 0.94589 0.85337 0.79035 0.78419 0.77885 1.18407 1.20969 1.19536 1.21679 0.93654 0.91789 1.50917 0.91729 1.18644 0.93650 0.92396 0.95514 1.27565 1.08572 1.12612 1.06944 1.69691 0.87137 0.85143 1.10709 1.93010 1.59753 1.84636 1.52821 1.26712 1.13413 1.04131 1.09687 1.19146 1.00968 0.94203 0.93441 1.21292 0.97802 0.95631 0.97893 1.21312 0.97565 0.94466 0.99688 1.21418 0.99875 1.01097 0.90840 1.18471 0.99679 0.93342 0.95942 1.21428 0.99331 1.00916 0.91034 1.21153 0.98952 0.94526 0.99771 1.21109 0.99651 0.96282 0.98167 1.21095 1.00918 0.98857 0.93480 1.18290 1.00416 0.95185 0.93644 0.92570 1.00824 0.95751 0.84088 0.92419 0.81161 0.90045 0.81445 0.81929 0.82594 0.82256 0.83272 0.85534 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.91 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.04 1.94 4.98 29.85 0.15 2.09 16 10 C -0.42 -16.55 5.86 71.98 0.42 -16.12 16 11 S 1.27 41.91 13.14 -56.49 -0.74 41.16 16 12 O -0.91 -42.97 17.97 -148.98 -2.68 -45.64 16 13 C -0.40 -10.01 5.58 71.24 0.40 -9.61 16 14 C -0.08 -1.96 5.15 -19.80 -0.10 -2.06 16 15 C -0.11 -1.94 9.59 22.04 0.21 -1.73 16 16 C -0.11 -1.76 9.95 22.04 0.22 -1.54 16 17 C -0.11 -2.06 9.77 22.33 0.22 -1.84 16 18 C -0.07 -1.86 5.74 -21.30 -0.12 -1.98 16 19 C -0.11 -2.34 9.77 22.33 0.22 -2.13 16 20 C -0.13 -2.89 9.95 22.04 0.22 -2.67 16 21 C -0.13 -3.84 9.95 22.04 0.22 -3.62 16 22 C -0.13 -4.16 9.11 22.33 0.20 -3.96 16 23 C -0.07 -2.25 5.74 -21.30 -0.12 -2.38 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 26 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.17 2.62 8.08 -2.39 -0.02 2.60 16 30 H 0.08 2.27 6.42 -2.39 -0.02 2.25 16 31 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.10 3.54 6.37 -2.91 -0.02 3.52 16 Total: -1.00 -85.04 328.80 2.77 -82.26 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.06 Total: 11.32 kcal Atomic # 6 Polarization: -80.99 SS G_CDS: 2.83 Total: -78.16 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.28 Total: -57.45 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -2.68 Total: -45.64 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 41.91 SS G_CDS: -0.74 Total: 41.16 kcal Total: -85.04 2.77 -82.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097164041.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.022 kcal (2) G-P(sol) polarization free energy of solvation -85.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds