Wall clock time and date at job start Tue Mar 31 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00276 * 2 1 4 4 O 1.20830 * 120.00047 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00564 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47586 * 179.97438 * 5 3 2 7 7 C 1.36876 * 119.99926 * 280.72700 * 6 5 3 8 8 H 1.07999 * 119.99726 * 315.98349 * 7 6 5 9 9 C 1.39039 * 119.99979 * 135.98938 * 7 6 5 10 10 N 1.31365 * 120.00079 * 338.52090 * 9 7 6 11 11 Si 1.86803 * 120.00460 * 158.52764 * 9 7 6 12 12 H 1.48500 * 109.47252 * 89.99283 * 11 9 7 13 13 H 1.48497 * 109.47183 * 210.00046 * 11 9 7 14 14 H 1.48500 * 109.46606 * 329.99442 * 11 9 7 15 15 C 1.34773 * 120.00075 * 100.72794 * 6 5 3 16 16 O 1.21583 * 120.00370 * 186.77717 * 15 6 5 17 17 C 1.47747 * 119.99690 * 6.77111 * 15 6 5 18 18 C 1.39766 * 120.08107 * 322.29926 * 17 15 6 19 19 C 1.38036 * 120.15007 * 180.02562 * 18 17 15 20 20 C 1.38107 * 120.31560 * 359.74595 * 19 18 17 21 21 C 1.39730 * 120.14831 * 0.50835 * 20 19 18 22 22 C 1.43193 * 120.07548 * 179.76992 * 21 20 19 23 23 N 8.99437 * 133.62590 * 68.05744 * 2 1 3 24 24 C 1.39364 * 120.07463 * 142.32130 * 17 15 6 25 25 H 1.09002 * 109.47174 * 59.99955 * 1 2 3 26 26 H 1.09002 * 109.47620 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47403 * 300.00734 * 1 2 3 28 28 H 1.09007 * 109.46422 * 60.00060 * 5 3 2 29 29 H 1.08998 * 109.46838 * 300.00630 * 5 3 2 30 30 H 0.97002 * 120.00579 * 185.05798 * 10 9 7 31 31 H 1.08000 * 119.92437 * 359.97438 * 18 17 15 32 32 H 1.08005 * 119.84030 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.92579 * 180.27778 * 20 19 18 34 34 H 1.08007 * 120.15429 * 0.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 3.9647 3.3978 -1.1653 8 1 4.3453 2.9588 -2.0757 9 6 3.4575 4.6923 -1.1767 10 7 2.6310 5.0823 -0.2331 11 14 3.9512 5.8770 -2.5341 12 1 2.9968 5.7588 -3.6656 13 1 3.9289 7.2665 -2.0106 14 1 5.3204 5.5474 -3.0049 15 6 4.3807 3.2650 1.1464 16 8 4.6072 4.4593 1.1725 17 6 4.5426 2.4555 2.3717 18 6 3.6472 1.4190 2.6499 19 6 3.7968 0.6621 3.7945 20 6 4.8339 0.9191 4.6696 21 6 5.7334 1.9556 4.4068 22 6 6.8051 2.2238 5.3177 23 7 7.6576 2.4329 6.0390 24 6 5.5884 2.7238 3.2529 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.9563 0.7805 -0.8892 29 1 3.9557 0.7808 0.8908 30 1 2.2199 5.9596 -0.2805 31 1 2.8358 1.2104 1.9683 32 1 3.1017 -0.1374 4.0048 33 1 4.9476 0.3201 5.5610 34 1 6.2828 3.5240 3.0432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120629788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:50 Heat of formation + Delta-G solvation = -19.430336 kcal Electronic energy + Delta-G solvation = -22655.112903 eV Core-core repulsion = 19134.478331 eV Total energy + Delta-G solvation = -3520.634572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.28618 -39.31100 -37.81972 -36.23488 -35.80311 -34.26163 -32.39161 -31.13496 -30.71729 -28.55575 -26.42074 -25.17582 -23.74505 -22.76843 -20.88112 -19.98828 -18.57974 -17.06766 -16.74454 -16.68358 -16.07433 -15.57455 -15.29494 -15.18994 -14.67360 -14.19193 -13.90043 -13.79350 -13.42449 -13.20642 -12.90160 -12.74669 -12.69681 -12.37301 -12.13097 -11.70849 -11.67878 -11.41052 -11.12127 -10.91215 -10.87393 -10.72621 -10.28834 -10.25159 -9.72919 -8.91717 -8.84783 -8.79061 -8.31077 -7.34713 -6.14045 -3.93788 0.80960 1.30441 2.70115 2.87648 2.92438 3.16153 3.28634 3.38144 3.39939 3.81684 3.91052 4.20589 4.43259 4.67563 4.97482 4.99413 5.18195 5.26010 5.36367 5.41194 5.44262 5.48121 5.55355 5.62207 5.78904 5.89141 5.96157 6.03103 6.32466 6.35016 6.55103 6.84887 6.93268 7.51589 7.53396 8.10729 8.50094 8.84619 8.95073 9.46483 10.01464 10.90885 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.006894 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.382394 B = 4060.625119 C = 5816.940593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.416 3.584 4 O -0.444 6.444 5 C 0.093 3.907 6 N -0.419 5.419 7 C -0.363 4.363 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.792 5.792 11 Si 0.911 3.089 12 H -0.282 1.282 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.508 3.492 16 O -0.511 6.511 17 C -0.094 4.094 18 C -0.085 4.085 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.039 4.039 22 C 0.265 3.735 23 N -0.430 5.430 24 C -0.030 4.030 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -12.689 3.679 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.253 3.747 4 O -0.325 6.325 5 C -0.033 4.033 6 N -0.140 5.140 7 C -0.490 4.490 8 H 0.103 0.897 9 C -0.134 4.134 10 N -0.421 5.421 11 Si 0.737 3.263 12 H -0.209 1.209 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.296 3.704 16 O -0.388 6.388 17 C -0.098 4.098 18 C -0.104 4.104 19 C -0.141 4.141 20 C -0.093 4.093 21 C -0.043 4.043 22 C -0.050 4.050 23 N -0.105 5.105 24 C -0.051 4.051 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.717 -11.185 4.914 12.238 hybrid contribution -0.763 0.511 -0.967 1.333 sum -1.479 -10.674 3.947 11.476 Atomic orbital electron populations 1.23080 0.77980 1.02490 1.02222 1.86541 1.22308 1.35209 1.85514 1.25094 0.93373 0.81489 0.74700 1.90846 1.65887 1.35326 1.40447 1.21833 0.86442 0.89956 1.05089 1.42934 1.55451 1.07281 1.08333 1.18949 1.45183 0.97112 0.87716 0.89716 1.25285 0.93247 0.98474 0.96411 1.69912 1.21330 1.19248 1.31649 0.86245 0.79198 0.80315 0.80518 1.20852 1.20873 1.19360 1.17722 0.82730 0.87485 0.82445 1.90670 1.51365 1.13732 1.82993 1.20535 0.95557 0.96446 0.97270 1.21942 0.98171 0.93677 0.96637 1.20992 0.98280 1.00708 0.94121 1.21140 0.93446 0.95451 0.99276 1.15884 0.94019 1.00410 0.93961 1.25702 0.92909 0.93308 0.93046 1.81217 1.10625 1.08508 1.10172 1.21201 0.96579 0.96772 0.90576 0.92398 0.89011 0.92493 0.88120 0.87059 0.92524 0.85076 0.84787 0.85164 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.38 -5.79 10.56 -39.24 -0.41 -6.21 16 3 C 0.42 7.90 5.98 36.01 0.22 8.12 16 4 O -0.44 -10.56 15.88 -18.75 -0.30 -10.86 16 5 C 0.09 1.67 5.47 -5.19 -0.03 1.65 16 6 N -0.42 -9.83 2.12 -117.21 -0.25 -10.08 16 7 C -0.36 -9.50 8.82 -15.00 -0.13 -9.63 16 8 H 0.09 2.09 7.92 -52.49 -0.42 1.68 16 9 C 0.08 2.22 4.28 -17.45 -0.07 2.15 16 10 N -0.79 -23.15 11.74 55.50 0.65 -22.50 16 11 Si 0.91 21.36 29.61 -169.99 -5.03 16.33 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.51 12.19 6.82 -12.38 -0.08 12.10 16 16 O -0.51 -14.43 14.38 5.29 0.08 -14.35 16 17 C -0.09 -1.73 5.39 -105.02 -0.57 -2.30 16 18 C -0.08 -1.29 7.35 -39.08 -0.29 -1.58 16 19 C -0.12 -1.40 10.01 -39.70 -0.40 -1.80 16 20 C -0.07 -0.80 9.75 -39.07 -0.38 -1.18 16 21 C -0.04 -0.53 5.73 -106.99 -0.61 -1.14 16 22 C 0.27 3.77 15.32 -22.47 -0.34 3.43 16 23 N -0.43 -6.82 18.54 41.84 0.78 -6.05 16 24 C -0.03 -0.48 9.33 -38.74 -0.36 -0.84 16 25 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.10 1.59 8.12 -51.92 -0.42 1.17 16 29 H 0.11 1.67 4.31 -51.93 -0.22 1.45 16 30 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 31 H 0.13 2.10 4.00 -52.49 -0.21 1.89 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 2.31 8.03 -52.48 -0.42 1.89 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -34.41 310.16 -4.74 -39.15 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -2.94 Total: -0.60 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.99 Total: 10.49 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.18 Total: -38.62 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.64 Total: -31.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.41 -4.74 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120629788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.720 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds