Wall clock time and date at job start Tue Mar 31 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48501 * 109.46929 * 269.99818 * 3 2 1 5 5 H 1.48497 * 109.47405 * 29.99845 * 3 2 1 6 6 H 1.48500 * 109.47230 * 150.00300 * 3 2 1 7 7 C 1.38955 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99697 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99723 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99324 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00373 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99306 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46781 * 180.02562 * 12 10 9 14 14 C 1.34781 * 120.00003 * 180.02562 * 13 12 10 15 15 O 1.21640 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.47170 * 119.99656 * 180.02562 * 14 13 12 17 17 C 1.38587 * 120.72923 * 359.97438 * 16 14 13 18 18 C 1.38924 * 121.36005 * 179.97438 * 17 16 14 19 19 C 1.35824 * 122.60075 * 359.97438 * 18 17 16 20 20 C 1.40838 * 120.55388 * 0.02562 * 19 18 17 21 21 C 1.38425 * 134.89278 * 179.97438 * 20 19 18 22 22 N 1.33895 * 107.84302 * 180.02562 * 21 20 19 23 23 H 0.97005 * 125.01700 * 179.97438 * 22 21 20 24 24 N 1.39980 * 109.95967 * 0.02562 * 22 21 20 25 25 C 1.31478 * 109.01709 * 359.97438 * 24 22 21 26 26 H 0.96999 * 120.00059 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00198 * 0.02562 * 9 7 2 28 28 H 1.08992 * 109.47380 * 60.00403 * 12 10 9 29 29 H 1.09001 * 109.47499 * 300.00021 * 12 10 9 30 30 H 0.97003 * 120.00173 * 0.02562 * 13 12 10 31 31 H 1.08001 * 119.31520 * 359.95570 * 17 16 14 32 32 H 1.08006 * 118.70052 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.72318 * 180.02562 * 19 18 17 34 34 H 1.08001 * 126.08076 * 359.76264 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5607 -2.3706 0.0011 13 7 6.0490 -3.7518 0.0005 14 6 7.3741 -3.9981 0.0009 15 8 8.1646 -3.0736 0.0022 16 6 7.8645 -5.3857 -0.0003 17 6 6.9773 -6.4504 -0.0013 18 6 7.4259 -7.7652 -0.0030 19 6 8.7451 -8.0884 -0.0042 20 6 9.7291 -7.0808 -0.0033 21 6 11.1132 -7.0669 -0.0037 22 7 11.5107 -5.7883 -0.0017 23 1 12.4346 -5.4926 -0.0012 24 7 10.3962 -4.9414 0.0005 25 6 9.3030 -5.6720 -0.0006 26 1 -0.4850 0.8400 0.0004 27 1 3.8648 -0.3633 0.0014 28 1 5.9240 -1.8568 0.8910 29 1 5.9241 -1.8567 -0.8889 30 1 5.4186 -4.4891 -0.0003 31 1 5.9154 -6.2538 -0.0005 32 1 6.6967 -8.5620 -0.0042 33 1 9.0420 -9.1268 -0.0059 34 1 11.7580 -7.9333 -0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343518531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:54 Heat of formation + Delta-G solvation = 33.322446 kcal Electronic energy + Delta-G solvation = -21183.127179 eV Core-core repulsion = 17697.072890 eV Total energy + Delta-G solvation = -3486.054288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43764 -39.51957 -38.23345 -36.95095 -34.47075 -33.70098 -32.26142 -31.77450 -31.03448 -29.33362 -27.56916 -24.95110 -24.21609 -22.08428 -21.79351 -19.97101 -19.54196 -18.68751 -18.23964 -17.49372 -16.85319 -15.89080 -15.39855 -15.38059 -15.24633 -14.96870 -14.71352 -14.15483 -13.94516 -13.80602 -13.41686 -13.01994 -12.46831 -12.27585 -12.19227 -12.15780 -11.85040 -11.82615 -11.20846 -10.70130 -10.61544 -10.45293 -10.03845 -9.66992 -9.64991 -9.09097 -8.79782 -8.73948 -8.27723 -7.84364 -6.38298 -3.90630 0.13664 1.58806 2.03967 2.42603 3.02228 3.04891 3.07168 3.14672 3.31757 3.59349 3.85053 4.01353 4.06269 4.27642 4.58181 4.72730 4.86474 4.95978 5.10419 5.16938 5.18010 5.45292 5.66489 5.76829 5.87491 5.88193 6.08254 6.15570 6.30486 6.57019 6.65321 6.78714 7.40033 7.47195 7.83413 8.03414 8.44677 8.52665 8.84313 9.32741 9.66448 10.73909 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.003104 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.368194 B = 9018.127470 C = 9789.351332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.556 3.444 15 O -0.532 6.532 16 C -0.115 4.115 17 C -0.027 4.027 18 C -0.166 4.166 19 C -0.015 4.015 20 C -0.220 4.220 21 C 0.088 3.912 22 N -0.432 5.432 23 H 0.444 0.556 24 N -0.270 5.270 25 C 0.138 3.862 26 H 0.275 0.725 27 H 0.375 0.625 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.410 0.590 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.885 -15.070 -0.021 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.214 5.214 10 C 0.225 3.775 11 O -0.463 6.463 12 C -0.020 4.020 13 N -0.362 5.362 14 C 0.343 3.657 15 O -0.410 6.410 16 C -0.121 4.121 17 C -0.050 4.050 18 C -0.186 4.186 19 C -0.036 4.036 20 C -0.230 4.230 21 C -0.069 4.069 22 N -0.132 5.132 23 H 0.288 0.712 24 N -0.095 5.095 25 C -0.021 4.021 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 22.276 -13.696 -0.019 26.150 hybrid contribution 0.442 0.372 0.014 0.578 sum 22.718 -13.324 -0.004 26.338 Atomic orbital electron populations 1.69616 1.05706 1.27782 1.48305 1.25061 0.95526 0.98153 0.97160 0.86676 0.79944 0.83779 0.79142 1.19401 1.20015 1.19190 1.19446 0.78969 0.96793 1.48575 0.86049 1.42125 1.07694 1.06157 1.65470 1.19644 0.88054 0.84875 0.84877 1.90525 1.69234 1.30907 1.55676 1.20965 0.93630 0.83939 1.03442 1.45580 1.06691 1.09137 1.74783 1.17884 0.82111 0.88426 0.77270 1.90817 1.55218 1.45340 1.49606 1.19841 0.88477 0.93099 1.10720 1.21414 0.99522 0.91992 0.92089 1.20385 0.95802 0.96240 1.06132 1.20290 0.91684 0.97505 0.94091 1.19598 0.92333 0.94243 1.16837 1.22752 0.95100 0.89148 0.99947 1.46585 1.10197 1.04237 1.52142 0.71177 1.77882 0.91431 1.12683 1.27517 1.21497 0.92238 0.90798 0.97517 0.91413 0.79219 0.89635 0.89631 0.75115 0.84381 0.85186 0.85553 0.79360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.26 27.74 -169.99 -4.72 14.55 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.62 5.09 -10.96 -0.06 -13.67 16 10 C 0.44 9.84 7.85 -10.98 -0.09 9.75 16 11 O -0.58 -14.66 15.24 5.55 0.08 -14.57 16 12 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 13 N -0.71 -12.15 5.48 -62.64 -0.34 -12.49 16 14 C 0.56 9.82 7.77 -12.63 -0.10 9.72 16 15 O -0.53 -11.04 16.32 5.24 0.09 -10.95 16 16 C -0.11 -1.72 6.05 -102.74 -0.62 -2.34 16 17 C -0.03 -0.32 9.50 -39.20 -0.37 -0.69 16 18 C -0.17 -1.53 9.83 -40.19 -0.39 -1.92 16 19 C -0.02 -0.13 10.02 -39.46 -0.40 -0.52 16 20 C -0.22 -2.27 6.34 -105.21 -0.67 -2.94 16 21 C 0.09 0.60 12.08 -16.58 -0.20 0.40 16 22 N -0.43 -3.73 7.18 30.86 0.22 -3.50 16 23 H 0.44 2.03 8.96 -182.68 -1.64 0.40 16 24 N -0.27 -3.98 12.24 34.35 0.42 -3.56 16 25 C 0.14 2.01 7.27 -80.99 -0.59 1.42 16 26 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.41 6.70 5.48 -40.82 -0.22 6.47 16 31 H 0.14 1.46 6.38 -52.49 -0.33 1.13 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -37.48 305.24 -6.73 -44.22 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.10 Total: 12.57 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.70 Total: 7.19 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 1.02 Total: -57.60 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.17 Total: -25.52 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.72 Total: 14.55 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -37.48 -6.73 -44.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.538 kcal (2) G-P(sol) polarization free energy of solvation -37.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds