Wall clock time and date at job start Tue Mar 31 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48496 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47068 * 299.99668 * 3 2 1 6 6 H 1.48497 * 109.46988 * 59.99627 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21613 * 120.00251 * 359.72091 * 14 13 12 16 16 C 1.47394 * 119.99480 * 179.72402 * 14 13 12 17 17 N 1.31568 * 126.82566 * 359.68499 * 16 14 13 18 18 N 1.28389 * 111.96342 * 179.80906 * 17 16 14 19 19 H 0.97007 * 124.36873 * 180.20096 * 18 17 16 20 20 C 1.37044 * 111.25682 * 0.47175 * 18 17 16 21 21 C 1.39127 * 134.72362 * 179.74449 * 20 18 17 22 22 C 1.36686 * 119.78144 * 179.97438 * 21 20 18 23 23 C 1.38900 * 120.89555 * 0.02562 * 22 21 20 24 24 C 1.36719 * 120.52378 * 359.94025 * 23 22 21 25 25 C 1.39194 * 119.50935 * 0.07167 * 24 23 22 26 26 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 29 29 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 31 31 H 1.07992 * 120.10616 * 0.02562 * 21 20 18 32 32 H 1.08001 * 119.55007 * 180.02562 * 22 21 20 33 33 H 1.08000 * 119.73619 * 179.97438 * 23 22 21 34 34 H 1.07991 * 120.24242 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5510 -7.4694 -0.0035 16 6 2.7046 -8.3674 -0.0092 17 7 4.0175 -8.2823 -0.0157 18 7 4.5737 -9.4394 -0.0154 19 1 5.5326 -9.5861 -0.0168 20 6 3.6378 -10.4405 -0.0189 21 6 3.6913 -11.8308 -0.0245 22 6 2.5320 -12.5548 -0.0262 23 6 1.2957 -11.9217 -0.0229 24 6 1.2145 -10.5569 -0.0166 25 6 2.3830 -9.8006 -0.0150 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6169 -4.9209 -0.8887 29 1 0.6175 -4.9205 0.8913 30 1 3.1496 -5.7992 0.0012 31 1 4.6457 -12.3361 -0.0267 32 1 2.5779 -13.6339 -0.0302 33 1 0.3914 -12.5122 -0.0247 34 1 0.2509 -10.0694 -0.0136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344167833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:20 Heat of formation + Delta-G solvation = -11.650025 kcal Electronic energy + Delta-G solvation = -21067.427265 eV Core-core repulsion = 17579.422824 eV Total energy + Delta-G solvation = -3488.004441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.53379 -40.88432 -39.79242 -38.70471 -36.27404 -35.36283 -33.63371 -33.36098 -31.22336 -31.03197 -29.32566 -26.69120 -24.90036 -24.06180 -23.27299 -21.42723 -21.23365 -20.07821 -19.29078 -18.76749 -17.83837 -17.34294 -17.11254 -16.76220 -16.45071 -16.40434 -16.16260 -15.74717 -15.30729 -15.22637 -14.95298 -14.56380 -13.97467 -13.62615 -13.56131 -13.17208 -12.92001 -12.88912 -12.45251 -12.23259 -12.11794 -12.04148 -11.58889 -11.37229 -11.24152 -10.58187 -10.30244 -10.09685 -9.79821 -9.10975 -8.51664 -6.01772 -0.24832 0.35939 0.82056 1.34661 1.42427 1.56079 1.63338 1.88658 1.97254 2.14766 2.30392 2.81309 3.07518 3.15356 3.20081 3.46890 3.71161 4.13444 4.15656 4.26908 4.39818 4.41014 4.45767 4.49733 4.75010 5.05980 5.14458 5.21156 5.38171 5.47683 5.58477 5.83871 5.91087 6.08288 6.33047 6.47941 6.71590 6.98721 7.03321 7.42835 7.93826 8.65546 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.046509 B = 0.002780 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.883764 B =10068.770364 C =10655.489169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.696 5.696 14 C 0.604 3.396 15 O -0.560 6.560 16 C -0.028 4.028 17 N -0.210 5.210 18 N -0.394 5.394 19 H 0.464 0.536 20 C 0.054 3.946 21 C -0.111 4.111 22 C -0.080 4.080 23 C -0.129 4.129 24 C -0.075 4.075 25 C -0.135 4.135 26 H 0.280 0.720 27 H 0.400 0.600 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.415 0.585 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -25.114 -0.060 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.007 4.007 13 N -0.349 5.349 14 C 0.390 3.610 15 O -0.437 6.437 16 C -0.198 4.198 17 N -0.042 5.042 18 N -0.117 5.117 19 H 0.313 0.687 20 C -0.059 4.059 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.148 4.148 24 C -0.096 4.096 25 C -0.142 4.142 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.253 0.747 31 H 0.183 0.817 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.761 -24.270 -0.057 24.945 hybrid contribution 0.043 0.836 -0.004 0.837 sum 5.804 -23.434 -0.061 24.142 Atomic orbital electron populations 1.69682 1.06975 1.29611 1.49271 1.26134 0.96559 1.02658 0.95760 0.84807 0.78075 0.76697 0.78368 1.19542 1.19537 1.19547 1.19768 0.92938 0.83530 1.50356 0.89692 1.41823 1.09622 1.04496 1.63368 1.20382 0.88094 0.85924 0.83683 1.90487 1.15285 1.87500 1.57986 1.20892 0.91444 0.83421 1.04929 1.45561 1.11798 1.04195 1.73372 1.16845 0.86656 0.81266 0.76236 1.90750 1.15872 1.84816 1.52244 1.22490 0.89785 0.93420 1.14061 1.72899 1.09459 1.09326 1.12472 1.43112 1.10329 0.99991 1.58239 0.68685 1.19535 0.88103 0.92993 1.05272 1.20286 1.01740 0.87430 1.03728 1.21254 0.90646 1.01945 0.96184 1.21240 1.00039 0.92990 1.00481 1.20495 0.96533 0.94567 0.97960 1.19671 0.95543 0.90469 1.08529 0.91019 0.76565 0.88023 0.88011 0.74656 0.81668 0.81112 0.82679 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.56 5.29 -306.98 -1.62 -30.19 16 10 C 0.43 20.70 7.85 87.66 0.69 21.39 16 11 O -0.62 -33.77 15.24 -3.07 -0.05 -33.82 16 12 C 0.12 4.62 6.15 85.63 0.53 5.15 16 13 N -0.70 -26.00 5.52 -470.12 -2.60 -28.60 16 14 C 0.60 22.00 7.81 86.65 0.68 22.68 16 15 O -0.56 -22.16 16.40 -4.07 -0.07 -22.22 16 16 C -0.03 -0.90 7.32 43.86 0.32 -0.58 16 17 N -0.21 -5.88 11.80 -44.88 -0.53 -6.41 16 18 N -0.39 -7.71 6.85 -51.60 -0.35 -8.07 16 19 H 0.46 5.02 8.96 -220.02 -1.97 3.04 16 20 C 0.05 1.09 7.38 39.18 0.29 1.37 16 21 C -0.11 -1.35 10.03 22.12 0.22 -1.13 16 22 C -0.08 -0.85 9.96 22.07 0.22 -0.63 16 23 C -0.13 -1.94 9.98 22.07 0.22 -1.72 16 24 C -0.08 -1.78 9.87 22.14 0.22 -1.56 16 25 C -0.13 -3.66 6.34 -20.14 -0.13 -3.79 16 26 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 28 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 29 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.42 16.00 7.17 -92.71 -0.66 15.34 16 31 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.12 3.18 7.65 -2.92 -0.02 3.16 16 Total: -1.00 -73.09 310.52 -0.54 -73.63 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: -2.17 Total: 37.06 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 4.54 Total: 23.05 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.82 Total: -122.01 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.11 Total: -56.04 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.09 -0.54 -73.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344167833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.983 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds