Wall clock time and date at job start Tue Mar 31 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 331.80166 * 3 2 1 5 5 C 1.36901 * 120.00158 * 292.13827 * 4 3 2 6 6 H 1.08000 * 120.00160 * 163.89974 * 5 4 3 7 7 C 1.39019 * 120.00154 * 343.89986 * 5 4 3 8 8 N 1.31383 * 119.99839 * 26.44093 * 7 5 4 9 9 Si 1.86800 * 120.00371 * 206.43946 * 7 5 4 10 10 H 1.48499 * 109.46903 * 59.99935 * 9 7 5 11 11 H 1.48494 * 109.47366 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46895 * 300.00152 * 9 7 5 13 13 C 1.34774 * 119.99979 * 112.14123 * 4 3 2 14 14 O 1.21627 * 120.00224 * 186.20124 * 13 4 3 15 15 C 1.47469 * 119.99926 * 6.20376 * 13 4 3 16 16 C 1.39821 * 120.08092 * 138.49031 * 15 13 4 17 17 C 1.37650 * 119.91721 * 180.27353 * 16 15 13 18 18 C 1.39148 * 120.08170 * 359.49344 * 17 16 15 19 19 N 1.39438 * 119.92229 * 180.23291 * 18 17 16 20 20 C 1.34772 * 119.99845 * 33.38449 * 19 18 17 21 21 N 1.34774 * 120.00088 * 184.87005 * 20 19 18 22 22 O 1.21576 * 120.00169 * 4.85792 * 20 19 18 23 23 C 1.39154 * 120.15612 * 0.50728 * 18 17 16 24 24 C 1.37640 * 120.08663 * 359.74740 * 23 18 17 25 25 H 1.09004 * 109.46848 * 211.80490 * 3 2 1 26 26 H 1.08997 * 109.47257 * 91.80364 * 3 2 1 27 27 H 0.97003 * 120.00149 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.04560 * 359.97438 * 16 15 13 29 29 H 1.08005 * 119.95443 * 179.72276 * 17 16 15 30 30 H 0.96996 * 120.00023 * 213.38623 * 19 18 17 31 31 H 0.97004 * 120.00038 * 359.97438 * 21 20 19 32 32 H 0.97004 * 120.00250 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.95634 * 179.72792 * 23 18 17 34 34 H 1.07992 * 120.04672 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2164 0.6526 5 6 2.9039 -1.3976 1.9958 6 1 3.0207 -2.3793 2.4306 7 6 2.5576 -0.3180 2.8002 8 7 1.9226 0.7095 2.2831 9 14 2.9949 -0.3280 4.6163 10 1 4.4682 -0.4318 4.7700 11 1 2.5193 0.9295 5.2469 12 1 2.3453 -1.4893 5.2754 13 6 3.7366 -2.1576 -0.0692 14 8 4.0425 -3.2159 0.4463 15 6 4.0659 -1.9044 -1.4842 16 6 5.3078 -2.2935 -1.9953 17 6 5.6138 -2.0504 -3.3151 18 6 4.6849 -1.4277 -4.1432 19 7 4.9965 -1.1875 -5.4809 20 6 5.7810 -2.0510 -6.1556 21 7 6.1627 -1.7701 -7.4173 22 8 6.1445 -3.0833 -5.6261 23 6 3.4479 -1.0391 -3.6380 24 6 3.1370 -1.2742 -2.3179 25 1 2.9709 0.8742 0.5416 26 1 2.9713 0.0332 -1.0271 27 1 1.6813 1.4630 2.8443 28 1 6.0281 -2.7799 -1.3541 29 1 6.5747 -2.3467 -3.7094 30 1 4.6487 -0.3989 -5.9258 31 1 5.8725 -0.9466 -7.8399 32 1 6.7276 -2.3915 -7.9028 33 1 2.7310 -0.5521 -4.2825 34 1 2.1769 -0.9720 -1.9265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355711508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:04 Heat of formation + Delta-G solvation = 29.047801 kcal Electronic energy + Delta-G solvation = -21970.745874 eV Core-core repulsion = 18484.506224 eV Total energy + Delta-G solvation = -3486.239651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71648 -39.46886 -37.68260 -35.84155 -34.75200 -34.23568 -33.85278 -32.03307 -30.73270 -29.39181 -27.42912 -25.23133 -23.33564 -22.60255 -21.13799 -19.67163 -18.59653 -18.19911 -18.07026 -16.75814 -16.34298 -16.06216 -15.55322 -15.13407 -14.76042 -14.40139 -14.21383 -14.11188 -13.54257 -13.53171 -12.87082 -12.76592 -12.57801 -12.04650 -11.86598 -11.54020 -11.26583 -11.22233 -11.00829 -10.60980 -10.51637 -10.42122 -10.29001 -10.08808 -9.98410 -9.04055 -8.69643 -8.66294 -8.22484 -7.87509 -6.61108 -3.97737 1.27056 1.63926 2.57855 2.89024 3.12967 3.20700 3.24415 3.55707 3.76576 3.98051 4.09725 4.13383 4.26707 4.70863 4.89339 5.07215 5.15827 5.40255 5.49468 5.60676 5.62673 5.72352 6.04799 6.16144 6.28334 6.38602 6.51399 6.62499 6.68182 6.73217 6.82897 7.18460 7.39784 7.60214 7.86914 8.25360 8.30328 8.81848 8.95691 9.14280 9.71218 10.41242 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.004042 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.882381 B = 6926.094796 C = 7512.537094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.259 3.741 3 C 0.191 3.809 4 N -0.433 5.433 5 C -0.316 4.316 6 H 0.112 0.888 7 C 0.041 3.959 8 N -0.869 5.869 9 Si 0.927 3.073 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.487 3.513 14 O -0.572 6.572 15 C -0.109 4.109 16 C -0.056 4.056 17 C -0.123 4.123 18 C 0.160 3.840 19 N -0.682 5.682 20 C 0.703 3.297 21 N -0.864 5.864 22 O -0.572 6.572 23 C -0.149 4.149 24 C -0.091 4.091 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.276 0.724 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.406 0.594 31 H 0.397 0.603 32 H 0.417 0.583 33 H 0.126 0.874 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 4.550 -17.298 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.058 4.058 3 C 0.064 3.936 4 N -0.152 5.152 5 C -0.442 4.442 6 H 0.130 0.870 7 C -0.163 4.163 8 N -0.508 5.508 9 Si 0.752 3.248 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.277 3.723 14 O -0.456 6.456 15 C -0.113 4.113 16 C -0.076 4.076 17 C -0.144 4.144 18 C 0.065 3.935 19 N -0.330 5.330 20 C 0.401 3.599 21 N -0.433 5.433 22 O -0.448 6.448 23 C -0.170 4.170 24 C -0.110 4.110 25 H 0.148 0.852 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.241 0.759 31 H 0.225 0.775 32 H 0.250 0.750 33 H 0.144 0.856 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.292 3.387 -16.389 17.879 hybrid contribution 0.283 0.819 0.258 0.904 sum 6.575 4.206 -16.132 17.921 Atomic orbital electron populations 1.80884 1.13519 1.09136 1.12408 1.28915 0.94994 0.92015 0.89904 1.19790 0.82022 0.92601 0.99139 1.43571 1.47342 1.15975 1.08268 1.19699 1.46836 0.97058 0.80617 0.87008 1.25332 0.94807 0.94912 1.01264 1.69842 1.33627 1.09461 1.37861 0.85983 0.79579 0.77705 0.81495 1.19479 1.20932 1.19723 1.17749 0.84050 0.85193 0.85313 1.90657 1.58397 1.24744 1.71797 1.20230 0.95502 1.00412 0.95154 1.21045 0.95628 0.96496 0.94382 1.21036 0.99623 1.01075 0.92633 1.17503 0.93604 1.00457 0.81977 1.42410 1.52823 1.26872 1.10861 1.15964 0.79217 0.83230 0.81453 1.42977 1.58113 1.27404 1.14807 1.91029 1.59839 1.25592 1.68314 1.20680 0.94637 1.05503 0.96169 1.21342 0.99654 0.97236 0.92761 0.85245 0.88053 0.91264 0.84894 0.84625 0.75897 0.77472 0.75050 0.85581 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.50 18.54 42.15 0.78 -10.72 16 2 C 0.26 5.82 11.98 -20.76 -0.25 5.57 16 3 C 0.19 3.88 4.80 -6.83 -0.03 3.84 16 4 N -0.43 -10.29 2.70 -119.15 -0.32 -10.61 16 5 C -0.32 -8.26 9.08 -15.00 -0.14 -8.40 16 6 H 0.11 3.11 7.37 -52.49 -0.39 2.73 16 7 C 0.04 1.02 5.28 -17.45 -0.09 0.92 16 8 N -0.87 -21.25 8.49 55.50 0.47 -20.78 16 9 Si 0.93 19.83 29.63 -169.99 -5.04 14.80 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.49 11.43 7.26 -12.50 -0.09 11.34 16 14 O -0.57 -15.47 16.57 5.25 0.09 -15.38 16 15 C -0.11 -2.05 5.35 -104.95 -0.56 -2.61 16 16 C -0.06 -0.96 9.64 -39.20 -0.38 -1.34 16 17 C -0.12 -1.88 8.62 -39.46 -0.34 -2.22 16 18 C 0.16 2.10 6.28 -83.72 -0.53 1.57 16 19 N -0.68 -6.47 5.33 -14.21 -0.08 -6.54 16 20 C 0.70 7.54 8.57 -86.92 -0.75 6.80 16 21 N -0.86 -4.77 8.88 27.63 0.25 -4.53 16 22 O -0.57 -8.98 14.82 5.30 0.08 -8.90 16 23 C -0.15 -1.92 9.94 -39.46 -0.39 -2.32 16 24 C -0.09 -1.45 7.31 -39.21 -0.29 -1.73 16 25 H 0.13 2.69 6.35 -51.93 -0.33 2.36 16 26 H 0.10 1.70 3.73 -51.93 -0.19 1.51 16 27 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.14 2.07 6.38 -52.48 -0.34 1.73 16 30 H 0.41 2.22 8.83 -40.82 -0.36 1.86 16 31 H 0.40 0.82 8.85 -40.82 -0.36 0.46 16 32 H 0.42 1.93 8.93 -40.82 -0.36 1.57 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.14 2.21 5.11 -52.49 -0.27 1.94 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -34.51 300.38 -5.65 -40.16 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.58 Total: 6.55 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -3.83 Total: 11.44 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 1.10 Total: -53.19 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.17 Total: -24.28 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.04 Total: 14.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.51 -5.65 -40.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355711508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.210 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds