Wall clock time and date at job start Tue Mar 31 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47118 * 331.80166 * 3 2 1 5 5 C 1.36901 * 120.00158 * 292.13827 * 4 3 2 6 6 H 1.08000 * 120.00160 * 163.89974 * 5 4 3 7 7 C 1.39019 * 120.00154 * 343.89986 * 5 4 3 8 8 N 1.31383 * 119.99839 * 26.44093 * 7 5 4 9 9 Si 1.86800 * 120.00371 * 206.43946 * 7 5 4 10 10 H 1.48499 * 109.46903 * 59.99935 * 9 7 5 11 11 H 1.48494 * 109.47366 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46895 * 300.00152 * 9 7 5 13 13 C 1.34774 * 119.99979 * 112.14123 * 4 3 2 14 14 O 1.21627 * 120.00224 * 186.20124 * 13 4 3 15 15 C 1.47469 * 119.99926 * 6.20376 * 13 4 3 16 16 C 1.39821 * 120.08092 * 138.49031 * 15 13 4 17 17 C 1.37650 * 119.91721 * 180.27353 * 16 15 13 18 18 C 1.39148 * 120.08170 * 359.49344 * 17 16 15 19 19 N 1.39438 * 119.92229 * 180.23291 * 18 17 16 20 20 C 1.34772 * 119.99845 * 33.38449 * 19 18 17 21 21 N 1.34774 * 120.00088 * 184.87005 * 20 19 18 22 22 O 1.21576 * 120.00169 * 4.85792 * 20 19 18 23 23 C 1.39154 * 120.15612 * 0.50728 * 18 17 16 24 24 C 1.37640 * 120.08663 * 359.74740 * 23 18 17 25 25 H 1.09004 * 109.46848 * 211.80490 * 3 2 1 26 26 H 1.08997 * 109.47257 * 91.80364 * 3 2 1 27 27 H 0.97003 * 120.00149 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.04560 * 359.97438 * 16 15 13 29 29 H 1.08005 * 119.95443 * 179.72276 * 17 16 15 30 30 H 0.96996 * 120.00023 * 213.38623 * 19 18 17 31 31 H 0.97004 * 120.00038 * 359.97438 * 21 20 19 32 32 H 0.97004 * 120.00250 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.95634 * 179.72792 * 23 18 17 34 34 H 1.07992 * 120.04672 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2164 0.6526 5 6 2.9039 -1.3976 1.9958 6 1 3.0207 -2.3793 2.4306 7 6 2.5576 -0.3180 2.8002 8 7 1.9226 0.7095 2.2831 9 14 2.9949 -0.3280 4.6163 10 1 4.4682 -0.4318 4.7700 11 1 2.5193 0.9295 5.2469 12 1 2.3453 -1.4893 5.2754 13 6 3.7366 -2.1576 -0.0692 14 8 4.0425 -3.2159 0.4463 15 6 4.0659 -1.9044 -1.4842 16 6 5.3078 -2.2935 -1.9953 17 6 5.6138 -2.0504 -3.3151 18 6 4.6849 -1.4277 -4.1432 19 7 4.9965 -1.1875 -5.4809 20 6 5.7810 -2.0510 -6.1556 21 7 6.1627 -1.7701 -7.4173 22 8 6.1445 -3.0833 -5.6261 23 6 3.4479 -1.0391 -3.6380 24 6 3.1370 -1.2742 -2.3179 25 1 2.9709 0.8742 0.5416 26 1 2.9713 0.0332 -1.0271 27 1 1.6813 1.4630 2.8443 28 1 6.0281 -2.7799 -1.3541 29 1 6.5747 -2.3467 -3.7094 30 1 4.6487 -0.3989 -5.9258 31 1 5.8725 -0.9466 -7.8399 32 1 6.7276 -2.3915 -7.9028 33 1 2.7310 -0.5521 -4.2825 34 1 2.1769 -0.9720 -1.9265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355711508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:04 Heat of formation + Delta-G solvation = 2.215675 kcal Electronic energy + Delta-G solvation = -21971.909403 eV Core-core repulsion = 18484.506224 eV Total energy + Delta-G solvation = -3487.403179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.76329 -40.93571 -39.02411 -37.69407 -36.12362 -35.79783 -34.64772 -33.81685 -32.01672 -30.65747 -29.14750 -26.96971 -24.57206 -23.87301 -22.12985 -21.23947 -19.95778 -19.41199 -19.08596 -18.33109 -17.89548 -17.21210 -16.78532 -16.55287 -16.11790 -15.73463 -15.68452 -15.38774 -15.09662 -14.89952 -14.51420 -14.18326 -13.98789 -13.65673 -13.42735 -13.31131 -13.06233 -13.03007 -12.44028 -12.31505 -12.13298 -11.91716 -11.54633 -11.22629 -10.92457 -10.69578 -10.53059 -10.13492 -9.87720 -9.03982 -8.50122 -5.95167 -0.00659 0.42784 1.37943 1.44558 1.53130 1.74909 1.83015 1.98887 2.13174 2.28401 2.32690 2.82318 2.88852 3.17282 3.54301 3.68298 3.84925 3.98007 4.03025 4.36653 4.47899 4.53577 4.57481 5.04393 5.06294 5.15835 5.24495 5.43142 5.44439 5.51964 5.87179 5.95927 5.99148 6.04112 6.36877 7.00433 7.01208 7.06278 7.28306 7.57359 7.86653 8.49780 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.029532 B = 0.004042 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.882381 B = 6926.094796 C = 7512.537094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.271 3.729 3 C 0.196 3.804 4 N -0.443 5.443 5 C -0.356 4.356 6 H 0.080 0.920 7 C 0.019 3.981 8 N -0.875 5.875 9 Si 0.982 3.018 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.280 1.280 13 C 0.483 3.517 14 O -0.622 6.622 15 C -0.136 4.136 16 C -0.062 4.062 17 C -0.127 4.127 18 C 0.179 3.821 19 N -0.666 5.666 20 C 0.698 3.302 21 N -0.836 5.836 22 O -0.625 6.625 23 C -0.129 4.129 24 C -0.090 4.090 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.281 0.719 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.430 0.570 31 H 0.418 0.582 32 H 0.425 0.575 33 H 0.172 0.828 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.756 6.622 -20.128 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.046 4.046 3 C 0.071 3.929 4 N -0.161 5.161 5 C -0.482 4.482 6 H 0.098 0.902 7 C -0.185 4.185 8 N -0.512 5.512 9 Si 0.806 3.194 10 H -0.193 1.193 11 H -0.194 1.194 12 H -0.206 1.206 13 C 0.274 3.726 14 O -0.510 6.510 15 C -0.140 4.140 16 C -0.082 4.082 17 C -0.147 4.147 18 C 0.082 3.918 19 N -0.316 5.316 20 C 0.396 3.604 21 N -0.406 5.406 22 O -0.505 6.505 23 C -0.149 4.149 24 C -0.109 4.109 25 H 0.146 0.854 26 H 0.159 0.841 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.270 0.730 31 H 0.250 0.750 32 H 0.258 0.742 33 H 0.190 0.810 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.379 5.552 -19.315 21.085 hybrid contribution 0.308 0.162 0.931 0.994 sum 6.687 5.714 -18.384 20.380 Atomic orbital electron populations 1.80879 1.14410 1.10111 1.13532 1.29278 0.95349 0.91071 0.88949 1.19972 0.80766 0.91018 1.01126 1.43671 1.47657 1.16973 1.07786 1.19527 1.49704 0.96566 0.82424 0.90190 1.25883 0.93935 0.94346 1.04308 1.69888 1.32926 1.09502 1.38903 0.85173 0.79144 0.77719 0.77383 1.19327 1.19400 1.20609 1.18536 0.82722 0.84230 0.87062 1.90601 1.60068 1.26788 1.73502 1.19875 0.97285 1.03986 0.92875 1.20958 0.95103 0.96850 0.95313 1.21038 1.00293 1.01500 0.91907 1.17559 0.92916 0.98072 0.83260 1.42215 1.52429 1.27564 1.09355 1.16203 0.79002 0.82614 0.82569 1.42738 1.56770 1.28211 1.12893 1.91015 1.61689 1.27951 1.69828 1.20991 0.94931 1.03946 0.95059 1.21298 0.98760 0.97034 0.93854 0.85447 0.84074 0.90823 0.86225 0.84722 0.73012 0.74993 0.74161 0.81012 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.20 18.54 20.01 0.37 -23.83 16 2 C 0.27 12.02 11.98 89.44 1.07 13.09 16 3 C 0.20 7.92 4.80 84.57 0.41 8.33 16 4 N -0.44 -21.70 2.70 -649.11 -1.76 -23.46 16 5 C -0.36 -19.38 9.08 84.09 0.76 -18.62 16 6 H 0.08 4.77 7.37 -2.91 -0.02 4.75 16 7 C 0.02 0.96 5.28 84.95 0.45 1.41 16 8 N -0.87 -42.51 8.49 21.68 0.18 -42.32 16 9 Si 0.98 41.07 29.63 68.60 2.03 43.10 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.48 23.64 7.26 86.68 0.63 24.27 16 14 O -0.62 -35.81 16.57 -4.12 -0.07 -35.87 16 15 C -0.14 -5.16 5.35 -20.08 -0.11 -5.27 16 16 C -0.06 -2.18 9.64 22.51 0.22 -1.96 16 17 C -0.13 -3.71 8.62 22.35 0.19 -3.52 16 18 C 0.18 4.09 6.28 38.37 0.24 4.33 16 19 N -0.67 -9.77 5.33 -317.15 -1.69 -11.46 16 20 C 0.70 12.71 8.57 179.06 1.53 14.24 16 21 N -0.84 -6.00 8.88 -184.76 -1.64 -7.64 16 22 O -0.62 -18.57 14.82 -3.96 -0.06 -18.63 16 23 C -0.13 -2.79 9.94 22.35 0.22 -2.57 16 24 C -0.09 -2.70 7.31 22.51 0.16 -2.54 16 25 H 0.13 5.24 6.35 -2.39 -0.02 5.22 16 26 H 0.14 4.52 3.73 -2.39 -0.01 4.52 16 27 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 28 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.14 4.02 6.38 -2.91 -0.02 4.00 16 30 H 0.43 2.29 8.83 -92.71 -0.82 1.47 16 31 H 0.42 -0.27 8.85 -92.71 -0.82 -1.09 16 32 H 0.42 2.50 8.93 -92.71 -0.83 1.67 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.13 4.08 5.11 -2.91 -0.01 4.07 16 Total: -1.00 -79.09 300.38 1.92 -77.17 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -1.24 Total: 11.73 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 5.78 Total: 31.21 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -4.53 Total: -108.71 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.13 Total: -54.50 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -79.09 1.92 -77.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355711508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.388 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds