Wall clock time and date at job start Tue Mar 31 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48501 * 109.47433 * 269.99567 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99722 * 3 2 1 6 6 H 1.48500 * 109.47242 * 149.99848 * 3 2 1 7 7 C 1.37877 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00251 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.34785 * 119.99902 * 180.02562 * 10 9 7 12 12 O 1.21355 * 119.99848 * 359.97438 * 11 10 9 13 13 C 1.49344 * 119.99715 * 179.97438 * 11 10 9 14 14 O 1.21380 * 119.99823 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99608 * 179.97438 * 13 11 10 16 16 C 1.39895 * 119.99841 * 184.58015 * 15 13 11 17 17 C 1.39602 * 119.83914 * 324.87736 * 16 15 13 18 18 C 1.36454 * 120.74161 * 179.97438 * 17 16 15 19 19 C 1.39311 * 120.09953 * 359.79812 * 18 17 16 20 20 N 1.37186 * 133.65756 * 179.61357 * 19 18 17 21 21 H 0.96995 * 125.46498 * 0.64058 * 20 19 18 22 22 N 1.39857 * 109.07093 * 180.36757 * 20 19 18 23 23 C 1.30252 * 110.09375 * 0.23231 * 22 20 19 24 24 C 1.40795 * 119.64286 * 0.41625 * 19 18 17 25 25 C 1.38100 * 119.83699 * 144.85163 * 16 15 13 26 26 H 0.97005 * 119.99368 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47339 * 59.99868 * 9 7 2 28 28 H 1.08999 * 109.47148 * 299.99742 * 9 7 2 29 29 H 0.96993 * 120.00454 * 359.97438 * 10 9 7 30 30 H 0.97005 * 120.00093 * 4.58723 * 15 13 11 31 31 H 1.07999 * 119.62723 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.94357 * 180.02562 * 18 17 16 33 33 H 1.07996 * 126.10364 * 179.97438 * 23 22 20 34 34 H 1.08006 * 120.27018 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5604 -5.1051 0.0000 13 6 2.7240 -6.0186 -0.0006 14 8 3.9173 -5.7968 -0.0001 15 7 2.2746 -7.2892 -0.0006 16 6 3.1800 -8.3513 0.0956 17 6 4.4331 -8.2530 -0.5118 18 6 5.3306 -9.2775 -0.4291 19 6 5.0044 -10.4374 0.2703 20 7 5.6694 -11.6108 0.5208 21 1 6.5666 -11.8245 0.2204 22 7 4.8485 -12.4473 1.2841 23 6 3.7085 -11.8626 1.5186 24 6 3.7417 -10.5492 0.8829 25 6 2.8300 -9.4917 0.7915 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 3.1565 -3.4356 0.0002 30 1 1.3234 -7.4673 -0.0674 31 1 4.6951 -7.3560 -1.0531 32 1 6.2966 -9.1875 -0.9036 33 1 2.8854 -12.2761 2.0825 34 1 1.8606 -9.5665 1.2618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427877309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:19 Heat of formation + Delta-G solvation = -4.658147 kcal Electronic energy + Delta-G solvation = -20977.415269 eV Core-core repulsion = 17489.714019 eV Total energy + Delta-G solvation = -3487.701250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.40080 -41.71006 -39.89303 -38.19343 -36.46596 -35.35419 -34.33657 -33.23610 -30.93945 -30.08290 -29.42453 -26.33392 -24.34452 -24.26869 -22.93689 -22.40922 -21.34913 -20.17767 -18.84616 -18.68290 -18.28800 -17.38544 -17.13459 -16.90952 -16.46906 -16.00030 -15.86702 -15.62168 -15.22273 -14.98077 -14.80147 -14.51461 -14.12677 -14.06129 -13.89175 -13.20660 -12.99215 -12.72709 -12.69478 -12.28442 -12.19154 -11.94603 -11.54108 -11.51571 -10.90264 -10.83141 -10.67492 -10.03236 -9.66072 -8.70337 -8.30450 -6.46253 -0.12227 0.04489 0.61062 1.30109 1.45868 1.46375 1.53154 1.58285 1.78408 2.11906 2.37114 2.72265 2.75055 3.05102 3.46489 3.56231 3.73683 3.83690 4.16211 4.24780 4.36117 4.74820 4.89138 4.99772 5.05340 5.15583 5.19438 5.28674 5.31304 5.42833 5.52627 5.76912 5.79624 6.01483 6.33767 6.51315 6.59754 6.60541 6.78399 7.02584 7.26910 8.81148 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.045568 B = 0.002672 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.324310 B =10474.573092 C =10915.096369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.673 5.673 11 C 0.494 3.506 12 O -0.557 6.557 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.629 5.629 16 C 0.085 3.915 17 C -0.077 4.077 18 C -0.124 4.124 19 C 0.111 3.889 20 N -0.509 5.509 21 H 0.449 0.551 22 N -0.274 5.274 23 C 0.087 3.913 24 C -0.180 4.180 25 C -0.050 4.050 26 H 0.270 0.730 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.413 0.587 30 H 0.431 0.569 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.233 0.767 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.433 -22.313 0.618 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.599 4.599 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.323 5.323 11 C 0.274 3.726 12 O -0.437 6.437 13 C 0.303 3.697 14 O -0.394 6.394 15 N -0.276 5.276 16 C -0.009 4.009 17 C -0.099 4.099 18 C -0.147 4.147 19 C -0.005 4.005 20 N -0.226 5.226 21 H 0.296 0.704 22 N -0.087 5.087 23 C -0.111 4.111 24 C -0.189 4.189 25 C -0.073 4.073 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.250 0.750 30 H 0.270 0.730 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.250 0.750 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.976 -23.206 0.815 25.273 hybrid contribution -0.014 1.667 -0.404 1.715 sum 9.962 -21.540 0.411 23.735 Atomic orbital electron populations 1.70103 1.07953 1.28693 1.49583 1.25952 0.95799 1.03532 0.93741 0.85201 0.78467 0.77238 0.78622 1.19586 1.20719 1.18382 1.21571 0.94281 0.90598 1.53444 0.90226 1.18825 0.88332 0.83109 0.95613 1.46149 1.12421 1.04914 1.68848 1.20218 0.88431 0.84848 0.79122 1.90718 1.17122 1.85010 1.50872 1.20021 0.88135 0.84285 0.77275 1.90722 1.16330 1.84750 1.47646 1.42924 1.11831 1.02904 1.69934 1.17573 0.91942 0.88876 1.02485 1.20926 0.92612 0.98855 0.97540 1.19838 1.01680 0.90562 1.02586 1.19063 0.93358 0.89438 0.98652 1.45998 1.17296 1.10972 1.48303 0.70410 1.76540 1.03817 1.17806 1.10562 1.25701 0.96446 0.90528 0.98391 1.19890 0.95091 0.97193 1.06702 1.20496 1.00539 0.90360 0.95908 0.92067 0.97639 0.97675 0.75037 0.72960 0.84557 0.83077 0.75040 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.29 21.45 0.28 -53.55 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.98 41.79 29.54 68.60 2.03 43.81 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.56 -30.03 9.28 25.60 0.24 -29.79 16 8 H 0.08 3.96 7.60 -2.91 -0.02 3.93 16 9 C 0.26 13.83 5.43 85.63 0.46 14.29 16 10 N -0.67 -28.72 5.54 -468.25 -2.59 -31.32 16 11 C 0.49 19.22 7.89 87.23 0.69 19.90 16 12 O -0.56 -24.17 16.48 -3.26 -0.05 -24.23 16 13 C 0.52 16.43 7.72 87.24 0.67 17.11 16 14 O -0.52 -17.44 13.89 -3.34 -0.05 -17.48 16 15 N -0.63 -15.43 5.32 -304.82 -1.62 -17.05 16 16 C 0.09 1.90 6.29 38.15 0.24 2.14 16 17 C -0.08 -1.75 8.61 22.18 0.19 -1.56 16 18 C -0.12 -2.31 10.01 22.11 0.22 -2.09 16 19 C 0.11 2.08 7.33 39.19 0.29 2.37 16 20 N -0.51 -8.26 7.38 -51.45 -0.38 -8.64 16 21 H 0.45 4.77 8.96 -213.48 -1.91 2.85 16 22 N -0.27 -4.87 12.55 -53.07 -0.67 -5.53 16 23 C 0.09 1.25 12.28 86.93 1.07 2.32 16 24 C -0.18 -3.23 6.36 -20.25 -0.13 -3.36 16 25 C -0.05 -0.89 10.02 22.65 0.23 -0.66 16 26 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.41 16.07 7.79 -92.71 -0.72 15.35 16 30 H 0.43 9.14 8.30 -92.70 -0.77 8.37 16 31 H 0.14 3.44 6.19 -2.91 -0.02 3.42 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -69.36 309.58 -0.62 -69.98 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -2.20 Total: 22.32 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 4.63 Total: 21.69 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.98 Total: -116.09 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.10 Total: -41.71 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.36 -0.62 -69.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427877309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.323 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds