Wall clock time and date at job start Tue Mar 31 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47395 * 12.07611 * 3 2 1 5 5 C 1.36768 * 120.00541 * 96.27205 * 4 3 2 6 6 H 1.08000 * 120.00805 * 162.59185 * 5 4 3 7 7 C 1.39112 * 119.99901 * 342.58930 * 5 4 3 8 8 N 1.31322 * 120.00158 * 343.06617 * 7 5 4 9 9 Si 1.86809 * 120.00031 * 163.06010 * 7 5 4 10 10 H 1.48497 * 109.46853 * 60.00462 * 9 7 5 11 11 H 1.48504 * 109.46816 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46976 * 300.00177 * 9 7 5 13 13 C 1.34785 * 119.99531 * 276.27522 * 4 3 2 14 14 O 1.21559 * 119.99740 * 184.91385 * 13 4 3 15 15 C 1.48055 * 120.00077 * 4.91843 * 13 4 3 16 16 C 1.39748 * 119.66222 * 187.21155 * 15 13 4 17 17 C 1.38491 * 119.25187 * 180.02562 * 16 15 13 18 18 C 1.38622 * 118.56160 * 359.74328 * 17 16 15 19 19 C 1.39607 * 119.26541 * 0.49601 * 18 17 16 20 20 C 1.48127 * 119.65560 * 179.76946 * 19 18 17 21 21 O 1.21417 * 119.99647 * 359.72877 * 20 19 18 22 22 O 1.34673 * 119.99852 * 179.45399 * 20 19 18 23 23 C 1.45200 * 116.99854 * 180.27809 * 22 20 19 24 24 N 1.32399 * 119.66465 * 7.22733 * 15 13 4 25 25 H 4.40646 * 5.51343 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47147 * 252.07075 * 3 2 1 27 27 H 1.09007 * 109.46909 * 132.07358 * 3 2 1 28 28 H 0.97006 * 120.00012 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.37085 * 359.97438 * 16 15 13 30 30 H 1.07994 * 120.71847 * 180.02562 * 17 16 15 31 31 H 1.08005 * 120.36981 * 180.26987 * 18 17 16 32 32 H 1.08997 * 109.46766 * 299.99612 * 23 22 20 33 33 H 1.08999 * 109.46873 * 59.99770 * 23 22 20 34 34 H 1.08996 * 109.47084 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3498 -0.2890 5 6 3.4851 -1.6917 -1.5661 6 1 4.0976 -2.5634 -1.7432 7 6 3.0523 -0.9166 -2.6371 8 7 2.0583 -0.0733 -2.4780 9 14 3.8851 -1.0753 -4.3017 10 1 3.7507 -2.4708 -4.7914 11 1 3.2427 -0.1475 -5.2670 12 1 5.3242 -0.7334 -4.1698 13 6 3.2397 -2.2553 0.7039 14 8 3.7287 -3.3460 0.4826 15 6 2.7592 -1.9216 2.0640 16 6 3.0065 -2.8024 3.1203 17 6 2.5527 -2.4820 4.3889 18 6 1.8699 -1.2888 4.5669 19 6 1.6524 -0.4564 3.4674 20 6 0.9193 0.8181 3.6468 21 8 0.5068 1.1318 4.7448 22 8 0.7153 1.6316 2.5930 23 6 -0.0053 2.8669 2.8438 24 7 2.0994 -0.7918 2.2669 25 1 -1.0498 -0.0004 0.0001 26 1 3.0092 0.3172 0.9778 27 1 3.0090 0.6895 -0.7629 28 1 1.7567 0.4675 -3.2248 29 1 3.5447 -3.7230 2.9491 30 1 2.7310 -3.1452 5.2224 31 1 1.5070 -1.0080 5.5446 32 1 -0.9973 2.6364 3.2323 33 1 0.5409 3.4644 3.5736 34 1 -0.1002 3.4274 1.9138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491015397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:21 Heat of formation + Delta-G solvation = -2.364824 kcal Electronic energy + Delta-G solvation = -22890.135045 eV Core-core repulsion = 19370.240489 eV Total energy + Delta-G solvation = -3519.894556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01613 -41.03004 -39.65832 -37.51085 -37.18094 -34.33297 -33.44056 -32.90548 -32.59984 -28.77619 -28.26994 -27.13838 -25.73007 -24.94536 -22.61848 -21.29506 -19.65881 -19.16134 -18.81882 -18.14337 -17.81640 -17.42377 -17.10897 -16.70184 -16.47585 -16.02844 -15.84666 -15.00790 -14.91304 -14.61275 -14.46373 -14.19923 -13.87607 -13.82120 -13.37843 -13.12407 -12.91354 -12.75633 -12.52389 -12.14115 -11.95631 -11.73920 -11.27084 -11.07567 -11.04395 -10.64463 -10.39459 -10.34425 -10.15842 -9.81292 -8.35281 -5.96376 -0.62479 -0.09029 1.21616 1.43061 1.45270 1.54781 1.61895 1.96485 2.18499 2.41949 2.63368 2.83694 2.88236 3.13414 3.26701 3.78981 3.87759 3.95959 3.98997 4.14132 4.29519 4.36162 4.38257 4.49172 4.73943 4.92803 4.96328 5.03808 5.09198 5.24959 5.41241 5.47690 5.60767 5.97681 6.30380 6.45860 6.78341 7.05619 7.30665 7.45023 7.89849 8.59343 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.006522 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.595710 B = 4292.261605 C = 5614.583472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.082 4.082 3 C 0.247 3.753 4 N -0.416 5.416 5 C -0.353 4.353 6 H 0.086 0.914 7 C 0.004 3.996 8 N -0.858 5.858 9 Si 0.995 3.005 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.265 1.265 13 C 0.462 3.538 14 O -0.624 6.624 15 C 0.077 3.923 16 C -0.094 4.094 17 C -0.064 4.064 18 C -0.090 4.090 19 C 0.059 3.941 20 C 0.530 3.470 21 O -0.517 6.517 22 O -0.337 6.337 23 C 0.029 3.971 24 N -0.420 5.420 25 H 0.216 0.784 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.278 0.722 29 H 0.155 0.845 30 H 0.200 0.800 31 H 0.177 0.823 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 4.595 12.060 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.084 4.084 3 C 0.125 3.875 4 N -0.130 5.130 5 C -0.481 4.481 6 H 0.104 0.896 7 C -0.201 4.201 8 N -0.493 5.493 9 Si 0.817 3.183 10 H -0.200 1.200 11 H -0.194 1.194 12 H -0.190 1.190 13 C 0.252 3.748 14 O -0.513 6.513 15 C -0.064 4.064 16 C -0.116 4.116 17 C -0.089 4.089 18 C -0.110 4.110 19 C -0.080 4.080 20 C 0.374 3.626 21 O -0.407 6.407 22 O -0.251 6.251 23 C -0.064 4.064 24 N -0.135 5.135 25 H 0.232 0.768 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.217 0.783 31 H 0.194 0.806 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.764 4.985 11.390 12.736 hybrid contribution 0.000 -0.410 -0.471 0.624 sum -2.764 4.574 10.919 12.157 Atomic orbital electron populations 1.24530 0.95788 1.01779 1.07982 1.22557 0.93778 0.98437 0.93588 1.18460 0.85709 0.83644 0.99691 1.43876 1.51770 1.10187 1.07125 1.19776 1.32019 1.14072 0.82238 0.89630 1.26204 0.95212 0.95713 1.02990 1.70152 1.21642 1.23539 1.33952 0.84986 0.78698 0.78311 0.76263 1.20047 1.19417 1.18966 1.18131 0.86866 0.84695 0.85118 1.90550 1.52649 1.24375 1.83679 1.21331 0.98132 0.91920 0.94994 1.22536 0.96748 0.99815 0.92454 1.22035 0.93824 0.95889 0.97154 1.22497 0.95635 0.93173 0.99701 1.20423 1.01544 0.94904 0.91091 1.20839 0.76193 0.83381 0.82197 1.90783 1.49237 1.74293 1.26398 1.86809 1.68933 1.32401 1.37002 1.23582 0.96047 0.82182 1.04615 1.68131 1.06283 1.16206 1.22912 0.76755 0.89052 0.89788 0.91207 0.82758 0.78278 0.80560 0.91314 0.91049 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.26 18.93 74.32 1.41 -10.85 16 2 C -0.08 -3.86 8.97 31.12 0.28 -3.58 16 3 C 0.25 11.95 4.75 84.57 0.40 12.35 16 4 N -0.42 -22.41 2.60 -648.49 -1.68 -24.09 16 5 C -0.35 -20.01 9.38 84.13 0.79 -19.22 16 6 H 0.09 5.10 7.32 -2.91 -0.02 5.08 16 7 C 0.00 0.23 4.99 84.98 0.42 0.66 16 8 N -0.86 -44.53 9.23 21.69 0.20 -44.33 16 9 Si 0.99 41.24 29.59 68.60 2.03 43.27 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.46 24.01 7.54 86.85 0.65 24.66 16 14 O -0.62 -35.54 15.98 -3.90 -0.06 -35.61 16 15 C 0.08 3.16 6.55 42.03 0.28 3.44 16 16 C -0.09 -2.95 9.63 22.70 0.22 -2.73 16 17 C -0.06 -1.37 10.16 22.42 0.23 -1.14 16 18 C -0.09 -2.14 9.63 22.69 0.22 -1.92 16 19 C 0.06 1.89 6.75 42.01 0.28 2.17 16 20 C 0.53 16.77 7.95 70.45 0.56 17.33 16 21 O -0.52 -16.19 16.11 20.10 0.32 -15.87 16 22 O -0.34 -10.64 9.47 -55.82 -0.53 -11.16 16 23 C 0.03 0.63 10.56 113.37 1.20 1.83 16 24 N -0.42 -16.39 4.48 -174.17 -0.78 -17.17 16 25 H 0.22 7.73 7.80 -4.43 -0.03 7.69 16 26 H 0.09 4.14 5.84 -2.39 -0.01 4.12 16 27 H 0.08 4.27 6.25 -2.38 -0.01 4.25 16 28 H 0.28 13.52 8.31 -92.70 -0.77 12.75 16 29 H 0.15 4.67 7.66 -2.91 -0.02 4.65 16 30 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.18 3.18 7.64 -2.91 -0.02 3.16 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.37 307.83 7.58 -63.79 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.14 Total: 18.16 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 6.94 Total: 23.01 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.26 Total: -85.60 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -0.27 Total: -62.64 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -71.37 7.58 -63.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491015397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.427 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds