Wall clock time and date at job start Tue Mar 31 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35333 * 117.00133 * 2 1 4 4 N 1.32463 * 118.98281 * 180.02562 * 3 2 1 5 5 C 1.31997 * 120.95103 * 180.02562 * 4 3 2 6 6 C 1.40329 * 118.94720 * 359.97438 * 5 4 3 7 7 C 1.46990 * 120.91626 * 179.97438 * 6 5 4 8 8 C 1.35093 * 120.00302 * 180.02562 * 7 6 5 9 9 C 1.41837 * 119.99987 * 179.97438 * 8 7 6 10 10 O 1.21771 * 119.99759 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99621 * 179.71947 * 9 8 7 12 12 C 1.36757 * 119.99784 * 180.27683 * 11 9 8 13 13 H 1.08003 * 119.99722 * 327.54847 * 12 11 9 14 14 C 1.39092 * 120.00113 * 147.54679 * 12 11 9 15 15 N 1.31340 * 119.99944 * 153.03623 * 14 12 11 16 16 Si 1.86802 * 119.99938 * 333.04082 * 14 12 11 17 17 H 1.48501 * 109.47104 * 95.07811 * 16 14 12 18 18 H 1.48499 * 109.46693 * 215.07670 * 16 14 12 19 19 H 1.48501 * 109.47223 * 335.07332 * 16 14 12 20 20 C 1.46501 * 120.00472 * 0.27836 * 11 9 8 21 21 C 1.47200 * 109.47149 * 93.60220 * 20 11 9 22 22 N 8.84732 * 85.67831 * 16.11009 * 2 1 3 23 23 C 1.40335 * 118.17455 * 0.25759 * 6 5 4 24 24 N 1.32001 * 118.94774 * 359.45973 * 23 6 5 25 25 H 1.08991 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46647 * 300.00346 * 1 2 3 27 27 H 1.08998 * 109.47080 * 59.99507 * 1 2 3 28 28 H 1.07997 * 120.53169 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99748 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.99950 * 359.97438 * 8 7 6 31 31 H 0.97001 * 120.00494 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.46972 * 213.60652 * 20 11 9 33 33 H 1.09002 * 109.46577 * 333.60232 * 20 11 9 34 34 H 1.07994 * 120.52793 * 179.72764 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 7 3.3673 1.2516 -0.0005 5 6 4.0067 2.4064 0.0000 6 6 3.2613 3.5954 0.0005 7 6 3.9286 4.9051 0.0016 8 6 3.1929 6.0381 0.0026 9 6 3.8369 7.3018 0.0043 10 8 5.0530 7.3654 0.0052 11 7 3.1029 8.4321 -0.0004 12 6 3.7239 9.6506 -0.0046 13 1 4.6720 9.7752 0.4975 14 6 3.1344 10.7293 -0.6554 15 7 3.3888 11.9550 -0.2577 16 14 1.9809 10.4349 -2.0949 17 1 0.5776 10.4185 -1.6093 18 1 2.1468 11.5222 -3.0925 19 1 2.3012 9.1299 -2.7271 20 6 1.6399 8.3556 -0.0011 21 6 1.1445 8.4222 1.3835 22 7 0.7624 8.4757 2.4480 23 6 1.8612 3.4997 0.0061 24 7 1.3025 2.3038 -0.0004 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 5.0862 2.4359 0.0000 29 1 5.0072 4.9615 0.0025 30 1 2.1144 5.9816 0.0022 31 1 2.9775 12.7073 -0.7113 32 1 1.2327 9.1892 -0.5733 33 1 1.3256 7.4156 -0.4546 34 1 1.2505 4.3904 0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492656822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:32 Heat of formation + Delta-G solvation = 36.201429 kcal Electronic energy + Delta-G solvation = -21388.645046 eV Core-core repulsion = 17902.715599 eV Total energy + Delta-G solvation = -3485.929446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27970 -40.97347 -39.44172 -38.00341 -36.57004 -35.47553 -34.89454 -34.20185 -31.23421 -29.42765 -28.60426 -27.36893 -25.96395 -24.94249 -22.69597 -20.47064 -20.17982 -19.83654 -19.03069 -18.43358 -18.12607 -17.46052 -17.20831 -16.35314 -15.83387 -15.67643 -15.60762 -15.39126 -15.22609 -15.02534 -14.66465 -14.56315 -14.30249 -13.99626 -13.65786 -13.35647 -13.00601 -12.89101 -12.68865 -12.54439 -12.26492 -12.13223 -12.08308 -11.72667 -11.30601 -11.10328 -10.53246 -10.30219 -10.04012 -9.34282 -8.54257 -6.09625 -0.73069 -0.00741 0.82448 1.24740 1.41972 1.53884 1.54845 1.56111 1.77330 2.19932 2.38163 2.73266 2.78852 2.88312 2.93439 3.29269 3.43384 3.63140 3.66710 3.81125 3.98144 4.12417 4.35220 4.40424 4.41181 4.45763 4.65321 4.73747 5.06250 5.17223 5.34547 5.51888 5.62171 6.04092 6.05680 6.43740 6.52044 6.89030 6.93031 7.19196 7.76970 8.62493 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.003767 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.539575 B = 7431.641190 C = 7810.483466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.484 3.516 4 N -0.548 5.548 5 C 0.213 3.787 6 C -0.208 4.208 7 C 0.001 3.999 8 C -0.208 4.208 9 C 0.494 3.506 10 O -0.609 6.609 11 N -0.461 5.461 12 C -0.346 4.346 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.897 5.897 16 Si 0.927 3.073 17 H -0.226 1.226 18 H -0.287 1.287 19 H -0.229 1.229 20 C 0.174 3.826 21 C 0.222 3.778 22 N -0.468 5.468 23 C 0.202 3.798 24 N -0.570 5.570 25 H 0.131 0.869 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.211 0.789 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.283 0.717 32 H 0.109 0.891 33 H 0.179 0.821 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -19.995 -5.263 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.183 3.817 4 N -0.273 5.273 5 C 0.047 3.953 6 C -0.213 4.213 7 C -0.021 4.021 8 C -0.229 4.229 9 C 0.289 3.711 10 O -0.495 6.495 11 N -0.182 5.182 12 C -0.474 4.474 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.532 5.532 16 Si 0.747 3.253 17 H -0.151 1.151 18 H -0.214 1.214 19 H -0.152 1.152 20 C 0.049 3.951 21 C -0.097 4.097 22 N -0.147 5.147 23 C 0.036 3.964 24 N -0.299 5.299 25 H 0.149 0.851 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.196 0.804 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.266 -20.911 -3.692 23.586 hybrid contribution 0.498 1.788 -0.578 1.944 sum -9.768 -19.123 -4.270 21.894 Atomic orbital electron populations 1.23289 0.73613 1.05507 1.03149 1.86048 1.25465 1.22732 1.86418 1.21137 0.86580 0.85428 0.88505 1.67612 1.07770 1.31354 1.20573 1.23960 1.02079 0.84181 0.85075 1.20560 0.95755 0.95230 1.09732 1.21921 1.00308 0.88714 0.91136 1.22089 1.01845 0.91247 1.07694 1.17683 0.87114 0.85329 0.80927 1.90697 1.15816 1.87986 1.55045 1.43557 1.03598 1.05679 1.65326 1.18611 1.07345 0.85598 1.35818 0.93320 1.26260 0.99750 0.93634 0.99479 1.69900 1.44206 1.00241 1.38856 0.86183 0.79499 0.80733 0.78866 1.15074 1.21364 1.15173 1.20015 0.81887 1.08211 0.85026 1.29938 0.92228 0.91746 0.95802 1.80922 1.10326 1.10372 1.13033 1.23860 0.92166 0.94884 0.85467 1.68108 1.41036 0.99244 1.21527 0.85116 0.91740 0.91445 0.77250 0.84495 0.82456 0.90686 0.87340 0.80400 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.35 113.37 1.17 1.67 16 2 O -0.31 -6.54 10.55 -86.22 -0.91 -7.45 16 3 C 0.48 11.32 8.48 180.48 1.53 12.85 16 4 N -0.55 -12.90 10.44 -312.16 -3.26 -16.16 16 5 C 0.21 3.99 11.10 85.18 0.95 4.94 16 6 C -0.21 -3.97 5.90 -19.97 -0.12 -4.09 16 7 C 0.00 0.03 9.45 23.84 0.23 0.26 16 8 C -0.21 -5.52 8.48 22.44 0.19 -5.33 16 9 C 0.49 20.00 7.40 85.13 0.63 20.63 16 10 O -0.61 -30.58 15.91 -4.57 -0.07 -30.65 16 11 N -0.46 -19.51 2.21 -655.30 -1.45 -20.96 16 12 C -0.35 -18.64 9.39 84.13 0.79 -17.85 16 13 H 0.05 3.16 7.80 -2.91 -0.02 3.14 16 14 C 0.01 0.67 5.27 84.97 0.45 1.11 16 15 N -0.90 -50.04 13.95 21.69 0.30 -49.74 16 16 Si 0.93 34.48 25.16 68.60 1.73 36.21 16 17 H -0.23 -6.91 6.60 99.48 0.66 -6.25 16 18 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.23 -7.65 7.11 99.48 0.71 -6.94 16 20 C 0.17 5.35 4.65 84.57 0.39 5.74 16 21 C 0.22 7.69 15.73 89.48 1.41 9.10 16 22 N -0.47 -18.11 18.51 19.96 0.37 -17.74 16 23 C 0.20 3.61 10.68 85.18 0.91 4.52 16 24 N -0.57 -11.87 9.18 -312.16 -2.87 -14.73 16 25 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 27 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 28 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.14 3.39 7.45 -2.91 -0.02 3.37 16 30 H 0.16 2.72 4.12 -2.91 -0.01 2.71 16 31 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.11 3.38 2.81 -2.39 -0.01 3.38 16 33 H 0.18 3.09 5.88 -2.39 -0.01 3.08 16 34 H 0.20 2.32 6.30 -2.91 -0.02 2.30 16 Total: -1.00 -78.17 308.66 3.49 -74.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.12 Total: 13.01 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 8.53 Total: 33.53 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -6.90 Total: -119.33 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.98 Total: -38.10 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 1.73 Total: 36.21 kcal Total: -78.17 3.49 -74.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492656822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.885 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds