Wall clock time and date at job start Tue Mar 31 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46457 * 130.08800 * 3 2 1 5 5 C 1.36939 * 120.00200 * 276.08635 * 4 3 2 6 6 H 1.08002 * 119.99978 * 310.02444 * 5 4 3 7 7 C 1.38810 * 119.99737 * 130.01620 * 5 4 3 8 8 N 1.31625 * 119.99657 * 150.58908 * 7 5 4 9 9 Si 1.86797 * 120.00459 * 330.58476 * 7 5 4 10 10 H 1.48500 * 109.47050 * 95.57781 * 9 7 5 11 11 H 1.48501 * 109.47379 * 215.58106 * 9 7 5 12 12 H 1.48503 * 109.46774 * 335.58308 * 9 7 5 13 13 S 1.65598 * 120.00212 * 96.09510 * 4 3 2 14 14 O 1.42100 * 104.27377 * 328.50726 * 13 4 3 15 15 O 1.42100 * 104.27782 * 200.65344 * 13 4 3 16 16 C 1.81399 * 104.45354 * 84.57616 * 13 4 3 17 17 H 1.09006 * 110.36199 * 65.72873 * 16 13 4 18 18 C 1.54375 * 110.32692 * 303.55329 * 16 13 4 19 19 N 1.48554 * 104.69961 * 217.30782 * 18 16 13 20 20 C 1.48563 * 104.22302 * 39.41882 * 19 18 16 21 21 C 1.54374 * 104.59461 * 320.51849 * 20 19 18 22 22 H 1.08997 * 110.32676 * 264.85244 * 21 20 19 23 23 O 1.42897 * 110.32457 * 142.74777 * 21 20 19 24 24 C 1.42895 * 114.00280 * 91.45534 * 23 21 20 25 25 H 4.40635 * 5.51415 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47363 * 10.08764 * 3 2 1 27 27 H 1.08997 * 109.46887 * 250.08407 * 3 2 1 28 28 H 0.96998 * 119.99886 * 180.02562 * 8 7 5 29 29 H 1.08996 * 110.41398 * 98.46582 * 18 16 13 30 30 H 1.09003 * 110.40755 * 336.14176 * 18 16 13 31 31 H 1.00900 * 111.00048 * 279.86327 * 19 18 16 32 32 H 1.09003 * 110.40971 * 79.29666 * 20 19 18 33 33 H 1.08999 * 110.41467 * 201.61997 * 20 19 18 34 34 H 1.08998 * 109.46863 * 300.00107 * 24 23 21 35 35 H 1.09000 * 109.47544 * 59.99703 * 24 23 21 36 36 H 1.08996 * 109.47359 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 0.8904 -1.0568 5 6 3.2436 0.4310 -2.3421 6 1 3.7551 -0.4992 -2.5413 7 6 2.6973 1.1607 -3.3890 8 7 3.2384 1.0985 -4.5872 9 14 1.1944 2.2309 -3.0973 10 1 1.6248 3.6274 -2.8330 11 1 0.3240 2.2005 -4.3001 12 1 0.4395 1.7157 -1.9268 13 16 3.5525 2.4516 -0.6970 14 8 2.6866 2.8093 0.3714 15 8 3.4930 3.1271 -1.9457 16 6 5.2671 2.3380 -0.1157 17 1 5.9220 2.0180 -0.9263 18 6 5.3667 1.3575 1.0726 19 7 6.3715 1.9672 1.9811 20 6 6.0758 3.4222 1.9287 21 6 5.7367 3.6971 0.4479 22 1 6.6215 4.0457 -0.0847 23 8 4.6872 4.6619 0.3499 24 6 5.1458 6.0117 0.2526 25 1 -1.0502 -0.0001 0.0004 26 1 3.0098 -1.0109 -0.1800 27 1 3.0091 0.3509 0.9662 28 1 2.8569 1.6087 -5.3187 29 1 5.7065 0.3798 0.7313 30 1 4.4033 1.2703 1.5751 31 1 7.3097 1.7772 1.6622 32 1 5.2229 3.6599 2.5644 33 1 6.9489 3.9989 2.2340 34 1 5.7306 6.2615 1.1378 35 1 5.7674 6.1212 -0.6362 36 1 4.2894 6.6823 0.1823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722282269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:09 Heat of formation + Delta-G solvation = -52.867521 kcal Electronic energy + Delta-G solvation = -22831.701427 eV Core-core repulsion = 19445.060862 eV Total energy + Delta-G solvation = -3386.640566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43437 -38.03144 -37.87231 -37.41189 -36.50858 -34.53424 -33.08401 -31.01403 -29.67813 -28.45467 -27.38303 -25.29150 -23.34665 -22.28972 -20.97052 -19.41246 -19.33698 -18.38240 -18.04325 -17.28742 -17.09329 -16.76915 -16.42346 -16.21233 -15.75835 -15.39143 -15.13080 -14.79861 -14.65153 -14.42422 -14.04272 -13.77932 -13.32245 -13.19681 -12.99321 -12.77137 -12.67370 -12.65005 -12.53387 -12.24627 -12.07046 -11.93488 -11.29248 -11.18018 -11.01541 -10.84169 -10.77801 -9.94989 -9.78647 -8.65172 -6.24708 -0.40073 1.21837 1.40135 1.46785 1.80663 2.05893 2.30137 2.40637 2.54521 2.88244 3.00339 3.16560 3.44252 3.50563 3.72287 3.85794 3.95865 4.10154 4.13567 4.27104 4.37785 4.42619 4.50052 4.68556 4.69589 4.73002 4.82497 4.88053 5.10233 5.27032 5.34220 5.74608 5.94151 6.12020 6.35342 6.84939 6.95553 7.12770 8.40693 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.008822 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.847979 B = 3173.240280 C = 3649.494839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.210 4.210 3 C 0.218 3.782 4 N -0.849 5.849 5 C -0.293 4.293 6 H 0.097 0.903 7 C 0.082 3.918 8 N -0.848 5.848 9 Si 0.853 3.147 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.238 1.238 13 S 2.523 3.477 14 O -1.000 7.000 15 O -0.989 6.989 16 C -0.642 4.642 17 H 0.145 0.855 18 C 0.070 3.930 19 N -0.647 5.647 20 C 0.026 3.974 21 C 0.070 3.930 22 H 0.099 0.901 23 O -0.434 6.434 24 C 0.023 3.977 25 H 0.241 0.759 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.281 0.719 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.355 0.645 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 1.877 11.420 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.212 4.212 3 C 0.094 3.906 4 N -0.675 5.675 5 C -0.435 4.435 6 H 0.114 0.886 7 C -0.133 4.133 8 N -0.484 5.484 9 Si 0.678 3.322 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.161 1.161 13 S 2.628 3.372 14 O -0.990 6.990 15 O -0.978 6.978 16 C -0.751 4.751 17 H 0.163 0.837 18 C -0.061 4.061 19 N -0.275 5.275 20 C -0.104 4.104 21 C 0.009 3.991 22 H 0.117 0.883 23 O -0.354 6.354 24 C -0.072 4.072 25 H 0.258 0.742 26 H 0.140 0.860 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.412 2.593 11.985 13.837 hybrid contribution -0.037 0.993 -1.544 1.837 sum 6.375 3.586 10.440 12.748 Atomic orbital electron populations 1.25578 0.96909 1.00779 1.00469 1.24330 0.96291 1.00318 1.00250 1.18713 0.83429 0.97758 0.90724 1.53097 1.70796 1.31119 1.12473 1.18648 1.35046 1.09791 0.80042 0.88588 1.26009 0.97158 0.95274 0.94820 1.69872 1.37237 1.38535 1.02769 0.87221 0.82550 0.82200 0.80180 1.19991 1.20580 1.16072 1.09803 0.78257 0.76143 0.73044 1.93367 1.63759 1.83574 1.58275 1.93415 1.86748 1.73758 1.43871 1.31959 1.29349 1.03293 1.10485 0.83666 1.22839 0.98532 0.97243 0.87496 1.63207 1.07251 1.07436 1.49622 1.23585 1.03469 0.90226 0.93169 1.23608 0.90686 0.85860 0.98911 0.88267 1.87847 1.34303 1.18552 1.94712 1.23096 1.01682 0.80447 1.01984 0.74218 0.86005 0.87787 0.90935 0.86524 0.90390 0.82785 0.90211 0.86532 0.90204 0.92781 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.28 18.26 74.32 1.36 -6.93 16 2 C -0.21 -8.71 13.00 31.13 0.40 -8.31 16 3 C 0.22 8.33 5.29 84.57 0.45 8.78 16 4 N -0.85 -39.28 1.95 -352.51 -0.69 -39.97 16 5 C -0.29 -15.25 9.55 84.03 0.80 -14.45 16 6 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 7 C 0.08 4.65 4.31 84.86 0.37 5.01 16 8 N -0.85 -49.25 13.97 21.65 0.30 -48.94 16 9 Si 0.85 47.14 25.53 68.60 1.75 48.89 16 10 H -0.27 -16.47 6.08 99.48 0.61 -15.86 16 11 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.24 -12.65 5.38 99.48 0.53 -12.12 16 13 S 2.52 121.30 2.73 -56.49 -0.15 121.14 16 14 O -1.00 -51.61 16.16 -121.07 -1.96 -53.56 16 15 O -0.99 -56.36 12.02 -127.63 -1.53 -57.89 16 16 C -0.64 -22.36 3.81 31.55 0.12 -22.24 16 17 H 0.15 4.80 8.14 -2.38 -0.02 4.78 16 18 C 0.07 1.95 6.24 86.45 0.54 2.49 16 19 N -0.65 -14.88 7.63 -500.88 -3.82 -18.70 16 20 C 0.03 0.62 7.20 86.45 0.62 1.25 16 21 C 0.07 2.11 3.51 31.55 0.11 2.22 16 22 H 0.10 2.46 7.84 -2.39 -0.02 2.44 16 23 O -0.43 -15.89 8.11 -133.75 -1.08 -16.97 16 24 C 0.02 0.60 10.86 113.37 1.23 1.83 16 25 H 0.24 6.86 7.80 -4.41 -0.03 6.83 16 26 H 0.12 3.83 8.09 -2.39 -0.02 3.81 16 27 H 0.10 3.45 5.32 -2.39 -0.01 3.43 16 28 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.08 2.39 5.47 -2.39 -0.01 2.38 16 31 H 0.35 6.21 8.92 -89.69 -0.80 5.41 16 32 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -76.68 305.41 -1.16 -77.84 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.02 Total: 18.52 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 6.00 Total: -30.36 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.21 Total: -107.61 kcal Atomic # 8 Polarization: -123.86 SS G_CDS: -4.57 Total: -128.43 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.75 Total: 48.89 kcal Atomic # 16 Polarization: 121.30 SS G_CDS: -0.15 Total: 121.14 kcal Total: -76.68 -1.16 -77.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722282269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.975 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds