Wall clock time and date at job start Tue Mar 31 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40041 * 120.46030 * 51.98026 * 3 2 1 5 5 C 1.38149 * 118.38180 * 179.97438 * 4 3 2 6 6 C 1.39606 * 119.20290 * 359.97438 * 5 4 3 7 7 C 1.47800 * 119.57769 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99933 * 353.16172 * 7 6 5 9 9 N 1.34780 * 120.00138 * 173.16563 * 7 6 5 10 10 C 1.36748 * 120.00118 * 185.62009 * 9 7 6 11 11 H 1.07994 * 119.99881 * 181.04192 * 10 9 7 12 12 C 1.39130 * 120.00129 * 1.04557 * 10 9 7 13 13 N 1.31312 * 120.00180 * 85.02822 * 12 10 9 14 14 Si 1.86798 * 119.99708 * 265.03608 * 12 10 9 15 15 H 1.48499 * 109.47574 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47556 * 120.00013 * 14 12 10 17 17 H 1.48507 * 109.46853 * 239.99536 * 14 12 10 18 18 C 1.46498 * 119.99682 * 5.61562 * 9 7 6 19 19 C 1.50701 * 109.47006 * 82.90668 * 18 9 7 20 20 O 1.20828 * 119.99925 * 0.02562 * 19 18 9 21 21 O 1.34228 * 120.00409 * 179.97438 * 19 18 9 22 22 C 1.45193 * 117.00395 * 179.97438 * 21 19 18 23 23 N 1.32901 * 120.84323 * 0.02562 * 6 5 4 24 24 C 1.31290 * 121.77491 * 0.02562 * 23 6 5 25 25 H 4.52962 * 13.95059 * 0.02562 * 4 2 1 26 26 H 1.08007 * 120.80608 * 0.24536 * 4 3 2 27 27 H 1.07998 * 120.39610 * 179.97438 * 5 4 3 28 28 H 0.96994 * 120.00192 * 184.91656 * 13 12 10 29 29 H 1.09004 * 109.46969 * 202.90108 * 18 9 7 30 30 H 1.08995 * 109.47122 * 322.90456 * 18 9 7 31 31 H 1.08997 * 109.47117 * 60.00294 * 22 21 19 32 32 H 1.09001 * 109.47393 * 180.02562 * 22 21 19 33 33 H 1.09002 * 109.47310 * 300.00757 * 22 21 19 34 34 H 1.08001 * 119.64520 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -0.7426 -0.9510 5 6 4.6968 -0.7106 -0.9118 6 6 5.3330 0.0558 0.0664 7 6 6.8096 0.0963 0.1155 8 8 7.4622 -0.6295 -0.6097 9 7 7.4328 0.9377 0.9641 10 6 8.7944 1.0593 0.9296 11 1 9.2952 1.7209 1.6209 12 6 9.5347 0.3308 0.0038 13 7 9.7063 0.7962 -1.2120 14 14 10.2842 -1.3096 0.4905 15 1 9.9476 -1.6073 1.9059 16 1 9.7418 -2.3805 -0.3836 17 1 11.7598 -1.2448 0.3362 18 6 6.6514 1.7221 1.9235 19 6 6.3525 0.8791 3.1363 20 8 6.7517 -0.2599 3.1937 21 8 5.6437 1.3938 4.1534 22 6 5.3933 0.5243 5.2889 23 7 4.6278 0.7494 0.9540 24 6 3.3149 0.7440 0.9502 25 1 -1.0499 -0.0001 -0.0009 26 1 2.7973 -1.3230 -1.6995 27 1 5.2769 -1.2719 -1.6294 28 1 10.1608 0.2571 -1.8780 29 1 7.2215 2.6014 2.2237 30 1 5.7163 2.0362 1.4598 31 1 6.3427 0.2108 5.7228 32 1 4.8115 1.0625 6.0373 33 1 4.8373 -0.3532 4.9590 34 1 2.7762 1.3208 1.6875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:51 Heat of formation + Delta-G solvation = 24.457068 kcal Electronic energy + Delta-G solvation = -22822.349167 eV Core-core repulsion = 19303.617696 eV Total energy + Delta-G solvation = -3518.731471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22461 -39.46393 -37.90611 -35.82792 -34.23949 -34.01195 -32.81546 -31.62976 -30.05653 -28.61741 -26.56117 -25.58487 -23.47950 -23.02345 -21.10080 -19.98687 -18.80726 -17.75109 -17.08147 -16.60944 -16.12826 -15.77947 -15.48923 -15.30505 -14.82901 -14.27489 -14.13175 -13.87418 -13.22643 -13.08838 -12.97442 -12.60043 -12.51497 -12.16470 -11.78061 -11.65699 -11.50319 -11.22661 -11.10075 -10.68237 -10.53128 -10.32815 -10.12774 -9.96073 -9.35351 -9.10625 -8.77724 -8.54548 -8.24054 -7.74243 -7.11482 -3.55463 0.85684 1.73241 2.85294 2.89168 3.03575 3.15712 3.28906 3.49147 3.55532 3.94997 4.06867 4.40460 4.48304 4.67500 4.83475 4.91161 5.19841 5.36587 5.38146 5.43652 5.52931 5.71208 5.73510 5.80749 5.88374 6.02753 6.24455 6.45365 6.49671 6.61194 6.91367 7.03137 7.13140 7.57216 7.64263 8.27656 8.35636 8.44355 8.84828 9.10911 9.78697 10.07998 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.006884 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.068854 B = 4066.352247 C = 5347.773154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.050 4.050 5 C -0.145 4.145 6 C 0.131 3.869 7 C 0.403 3.597 8 O -0.585 6.585 9 N -0.347 5.347 10 C -0.417 4.417 11 H 0.115 0.885 12 C 0.199 3.801 13 N -0.683 5.683 14 Si 0.861 3.139 15 H -0.260 1.260 16 H -0.266 1.266 17 H -0.291 1.291 18 C 0.097 3.903 19 C 0.460 3.540 20 O -0.497 6.497 21 O -0.365 6.365 22 C 0.038 3.962 23 N -0.501 5.501 24 C 0.137 3.863 25 H 0.220 0.780 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 2.533 5.041 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.075 4.075 5 C -0.166 4.166 6 C -0.003 4.003 7 C 0.204 3.796 8 O -0.475 6.475 9 N -0.057 5.057 10 C -0.537 4.537 11 H 0.133 0.867 12 C -0.038 4.038 13 N -0.303 5.303 14 Si 0.682 3.318 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.219 1.219 18 C -0.029 4.029 19 C 0.301 3.699 20 O -0.382 6.382 21 O -0.282 6.282 22 C -0.057 4.057 23 N -0.214 5.214 24 C -0.024 4.024 25 H 0.237 0.763 26 H 0.147 0.853 27 H 0.160 0.840 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.174 0.826 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.758 2.431 5.146 11.296 hybrid contribution -0.519 -1.517 -0.225 1.620 sum -10.277 0.913 4.921 11.431 Atomic orbital electron populations 1.24681 0.95573 1.01709 1.01109 1.19950 0.91709 1.00035 1.00224 1.16781 0.87221 1.05266 1.01160 1.21401 0.93638 0.95988 0.96456 1.21742 0.93691 1.00780 1.00374 1.21566 0.95255 0.92356 0.91117 1.16804 0.84559 0.89256 0.88973 1.90497 1.62863 1.46026 1.48134 1.43545 1.05917 1.31537 1.24741 1.18986 0.80080 1.33045 1.21581 0.86745 1.25044 0.90158 0.96689 0.91869 1.70506 1.19654 1.35853 1.04314 0.87230 0.75889 0.86716 0.81955 1.18425 1.19081 1.21898 1.21778 1.01265 0.92844 0.87011 1.24462 0.74029 0.87727 0.83670 1.90669 1.48803 1.19401 1.79312 1.86489 1.68211 1.45588 1.27909 1.23089 1.01309 0.94636 0.86617 1.67929 1.07218 1.21211 1.25047 1.22823 0.90013 0.94513 0.95028 0.76318 0.85288 0.84024 0.90016 0.87869 0.82616 0.92477 0.88824 0.92552 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.51 19.25 29.55 0.57 -1.94 16 2 C -0.12 -1.73 13.28 -38.84 -0.52 -2.25 16 3 C -0.10 -1.66 5.75 -106.66 -0.61 -2.28 16 4 C -0.05 -0.85 9.89 -38.94 -0.39 -1.23 16 5 C -0.14 -2.91 9.61 -39.10 -0.38 -3.28 16 6 C 0.13 2.95 6.65 -82.98 -0.55 2.39 16 7 C 0.40 10.62 7.29 -12.35 -0.09 10.53 16 8 O -0.58 -16.94 12.34 5.28 0.07 -16.88 16 9 N -0.35 -8.69 2.19 -117.20 -0.26 -8.95 16 10 C -0.42 -10.90 9.48 -15.03 -0.14 -11.05 16 11 H 0.12 2.81 8.01 -52.49 -0.42 2.39 16 12 C 0.20 5.28 3.00 -17.44 -0.05 5.23 16 13 N -0.68 -17.95 13.55 55.51 0.75 -17.19 16 14 Si 0.86 21.48 28.25 -169.99 -4.80 16.67 16 15 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.10 1.97 5.58 -5.19 -0.03 1.94 16 19 C 0.46 9.42 6.85 36.01 0.25 9.66 16 20 O -0.50 -12.11 16.00 -18.75 -0.30 -12.41 16 21 O -0.36 -6.15 10.56 -39.25 -0.41 -6.56 16 22 C 0.04 0.51 10.56 101.05 1.07 1.58 16 23 N -0.50 -9.86 5.07 -9.50 -0.05 -9.90 16 24 C 0.14 2.29 10.91 -17.15 -0.19 2.11 16 25 H 0.22 1.62 7.80 -54.09 -0.42 1.20 16 26 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.14 2.88 7.64 -52.49 -0.40 2.48 16 28 H 0.29 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.10 1.81 7.95 -51.93 -0.41 1.40 16 30 H 0.16 2.98 5.04 -56.86 -0.29 2.69 16 31 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -32.88 312.65 -4.54 -37.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.19 Total: 1.68 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -1.06 Total: 11.41 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.45 Total: -36.04 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.65 Total: -35.85 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.80 Total: 16.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.88 -4.54 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.878 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds