Wall clock time and date at job start Tue Mar 31 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47108 * 269.99484 * 3 2 1 5 5 H 1.48497 * 109.47562 * 29.99424 * 3 2 1 6 6 H 1.48506 * 109.47058 * 149.99662 * 3 2 1 7 7 C 1.38817 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49180 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11982 * 155.35595 * 10 9 7 12 12 N 1.46499 * 113.74283 * 137.95241 * 11 10 9 13 13 C 1.34777 * 119.99665 * 157.20690 * 12 11 10 14 14 O 1.21543 * 120.00296 * 359.72071 * 13 12 11 15 15 C 1.47877 * 119.99819 * 179.72371 * 13 12 11 16 16 C 1.39449 * 121.11218 * 359.71668 * 15 13 12 17 17 C 1.38625 * 119.37595 * 179.73836 * 16 15 13 18 18 N 1.31587 * 121.62919 * 0.57721 * 17 16 15 19 19 C 1.32212 * 121.86894 * 359.69160 * 18 17 16 20 20 N 1.37213 * 134.67004 * 180.02562 * 19 18 17 21 21 H 0.97001 * 125.86998 * 359.97438 * 20 19 18 22 22 N 1.28779 * 108.25561 * 180.02562 * 20 19 18 23 23 N 1.28689 * 111.76178 * 0.02562 * 22 20 19 24 24 C 1.34392 * 109.15148 * 359.97438 * 23 22 20 25 25 C 1.47814 * 134.45715 * 359.86085 * 9 7 2 26 26 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 27 27 H 1.09005 * 113.76936 * 41.05826 * 10 9 7 28 28 H 1.08997 * 113.77659 * 269.65640 * 10 9 7 29 29 H 1.09000 * 113.74304 * 269.16191 * 11 10 9 30 30 H 0.97001 * 119.99790 * 336.92403 * 12 11 10 31 31 H 1.08001 * 120.31368 * 359.97438 * 16 15 13 32 32 H 1.07992 * 119.18477 * 180.26862 * 17 16 15 33 33 H 1.09000 * 113.76874 * 90.37935 * 25 9 7 34 34 H 1.09000 * 113.83941 * 318.92025 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6410 12 7 -0.3333 -5.2614 0.0982 13 6 -1.2772 -5.8897 0.8267 14 8 -1.5603 -5.4818 1.9361 15 6 -1.9683 -7.0756 0.2764 16 6 -1.6659 -7.5599 -0.9959 17 6 -2.3320 -8.6776 -1.4741 18 7 -3.2535 -9.2893 -0.7612 19 6 -3.5887 -8.8756 0.4490 20 7 -4.4838 -9.2979 1.3993 21 1 -5.0815 -10.0577 1.3194 22 7 -4.3946 -8.5115 2.4153 23 7 -3.5137 -7.5917 2.2308 24 6 -2.9592 -7.7494 1.0168 25 6 -0.1058 -2.7570 0.0026 26 1 -0.4850 0.8401 -0.0004 27 1 2.5624 -4.0323 0.6558 28 1 1.8319 -4.2351 -0.9969 29 1 0.3595 -4.0638 1.7308 30 1 -0.1074 -5.5869 -0.7872 31 1 -0.9170 -7.0711 -1.6014 32 1 -2.0923 -9.0526 -2.4580 33 1 -0.5312 -2.8721 -0.9943 34 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030654740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:29 Heat of formation + Delta-G solvation = 161.859823 kcal Electronic energy + Delta-G solvation = -21647.174531 eV Core-core repulsion = 18198.986793 eV Total energy + Delta-G solvation = -3448.187738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.65612 -40.05067 -38.91684 -37.51551 -34.41374 -33.78110 -32.32974 -31.53400 -31.07116 -27.59113 -25.84198 -24.87273 -24.15811 -23.84030 -22.67391 -21.02837 -19.83573 -18.99841 -18.55109 -17.61358 -16.86694 -16.81598 -15.94063 -15.59767 -15.05421 -15.02511 -14.54173 -14.12430 -13.81810 -13.52202 -13.17065 -12.73110 -12.55800 -11.97881 -11.89227 -11.79789 -11.49229 -11.46304 -10.91735 -10.80412 -10.48835 -10.31086 -10.05517 -9.62232 -9.60288 -9.54599 -9.36147 -8.83418 -8.53341 -6.95380 -5.79515 -3.13907 -0.21415 0.55454 1.85354 1.96002 2.75091 3.07053 3.38751 3.43312 3.46110 3.49251 3.52338 3.94443 4.14403 4.26927 4.43332 4.49384 4.84263 5.06020 5.16869 5.22118 5.42419 5.46021 5.52070 5.84002 5.96922 6.15252 6.28978 6.33987 6.49959 6.64386 7.14495 7.20270 7.30060 7.52295 7.71188 7.91785 7.93838 8.35678 9.00223 9.66798 10.52070 11.37086 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.003228 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.374157 B = 8671.899501 C = 9052.241727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.092 3.908 12 N -0.705 5.705 13 C 0.545 3.455 14 O -0.500 6.500 15 C 0.000 4.000 16 C -0.144 4.144 17 C 0.162 3.838 18 N -0.463 5.463 19 C 0.213 3.787 20 N -0.408 5.408 21 H 0.457 0.543 22 N 0.000 5.000 23 N -0.205 5.205 24 C 0.002 3.998 25 C 0.154 3.846 26 H 0.255 0.745 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.114 0.886 30 H 0.396 0.604 31 H 0.160 0.840 32 H 0.183 0.817 33 H 0.030 0.970 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -21.331 -4.810 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.013 4.013 11 C -0.013 4.013 12 N -0.357 5.357 13 C 0.329 3.671 14 O -0.374 6.374 15 C -0.017 4.017 16 C -0.168 4.168 17 C -0.010 4.010 18 N -0.177 5.177 19 C -0.030 4.030 20 N -0.138 5.138 21 H 0.305 0.695 22 N 0.017 4.983 23 N -0.081 5.081 24 C -0.127 4.127 25 C 0.027 3.973 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.132 0.868 30 H 0.230 0.770 31 H 0.178 0.822 32 H 0.200 0.800 33 H 0.048 0.952 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.780 -20.981 -2.770 22.222 hybrid contribution 0.842 0.642 -1.459 1.802 sum -5.938 -20.339 -4.229 21.606 Atomic orbital electron populations 1.69822 1.05059 1.25571 1.55921 1.24824 0.95694 0.97672 1.02040 0.86092 0.78649 0.83264 0.77551 1.21572 1.21545 1.20518 1.18973 0.90250 0.81552 1.44700 0.89995 1.45698 1.02369 0.99152 1.86063 1.22868 0.94496 0.86900 0.97067 1.24042 0.93359 0.83668 1.00199 1.46065 1.39019 1.30939 1.19661 1.17897 0.80713 0.82661 0.85825 1.90887 1.62756 1.64887 1.18824 1.19892 0.93528 0.95203 0.93048 1.22448 1.01626 0.97934 0.94796 1.22841 0.88798 0.90741 0.98598 1.66317 1.15970 1.31938 1.03478 1.19871 0.95597 0.95244 0.92303 1.44705 1.31312 1.27002 1.10755 0.69533 1.78280 1.13869 0.98024 1.08165 1.75617 1.04487 1.14106 1.13873 1.20157 1.00690 0.97478 0.94386 1.22737 0.88230 0.89017 0.97284 0.93472 0.93076 0.94649 0.86817 0.76961 0.82239 0.80050 0.95245 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.29 10.70 -15.06 -0.16 -6.45 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.19 3.70 -177.84 -0.66 -15.85 16 10 C 0.11 2.16 8.69 -2.97 -0.03 2.13 16 11 C 0.09 1.72 4.40 -70.12 -0.31 1.41 16 12 N -0.70 -10.18 5.33 -56.26 -0.30 -10.48 16 13 C 0.55 8.75 7.79 -12.31 -0.10 8.65 16 14 O -0.50 -10.35 15.89 5.33 0.08 -10.27 16 15 C 0.00 0.00 5.92 -104.51 -0.62 -0.62 16 16 C -0.14 -1.14 9.61 -38.99 -0.37 -1.51 16 17 C 0.16 1.10 11.14 -17.51 -0.20 0.91 16 18 N -0.46 -4.37 10.35 -12.39 -0.13 -4.50 16 19 C 0.21 2.41 8.56 -156.21 -1.34 1.08 16 20 N -0.41 -3.89 7.06 31.11 0.22 -3.67 16 21 H 0.46 2.30 8.96 -190.25 -1.71 0.60 16 22 N 0.00 -0.01 13.29 60.35 0.80 0.80 16 23 N -0.20 -3.31 11.92 32.23 0.38 -2.92 16 24 C 0.00 0.03 6.97 -84.73 -0.59 -0.56 16 25 C 0.15 3.59 7.33 -2.83 -0.02 3.57 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 30 H 0.40 4.16 6.86 -40.82 -0.28 3.88 16 31 H 0.16 0.72 6.53 -52.49 -0.34 0.37 16 32 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -37.00 302.04 -7.59 -44.59 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.32 Total: -0.95 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -3.82 Total: 8.36 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.95 Total: -63.25 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.00 -7.59 -44.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030654740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.450 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds