Wall clock time and date at job start Tue Mar 31 2020 02:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00319 * 2 1 4 4 H 1.48505 * 109.46993 * 270.00018 * 3 2 1 5 5 H 1.48502 * 109.47034 * 30.00021 * 3 2 1 6 6 H 1.48498 * 109.47266 * 150.00277 * 3 2 1 7 7 C 1.38823 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99795 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.48980 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11417 * 155.35909 * 10 9 7 12 12 N 1.46508 * 113.74169 * 137.95276 * 11 10 9 13 13 C 1.34775 * 120.00083 * 156.92275 * 12 11 10 14 14 O 1.21559 * 119.99964 * 359.97438 * 13 12 11 15 15 C 1.47823 * 119.99832 * 180.02562 * 13 12 11 16 16 C 1.41578 * 120.37124 * 0.02562 * 15 13 12 17 17 C 1.34814 * 120.10920 * 179.97438 * 16 15 13 18 18 N 1.36062 * 120.83029 * 0.02562 * 17 16 15 19 19 N 1.40254 * 133.73110 * 179.97438 * 18 17 16 20 20 N 1.28971 * 107.02042 * 180.02562 * 19 18 17 21 21 N 1.28544 * 110.84244 * 0.02562 * 20 19 18 22 22 C 1.32621 * 110.18720 * 0.02562 * 21 20 19 23 23 C 1.38450 * 120.36820 * 180.02562 * 15 13 12 24 24 C 1.47807 * 134.45449 * 359.87083 * 9 7 2 25 25 H 0.97000 * 119.99879 * 0.02562 * 1 2 3 26 26 H 1.08994 * 113.77023 * 41.05360 * 10 9 7 27 27 H 1.09004 * 113.76760 * 269.65920 * 10 9 7 28 28 H 1.08998 * 113.74587 * 269.15152 * 11 10 9 29 29 H 0.97000 * 119.99515 * 336.91996 * 12 11 10 30 30 H 1.07996 * 119.94523 * 0.02562 * 16 15 13 31 31 H 1.08008 * 119.58607 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.52581 * 0.03775 * 23 15 13 33 33 H 1.08997 * 113.77320 * 90.37852 * 24 9 7 34 34 H 1.09005 * 113.84052 * 318.90934 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3882 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3470 -4.0829 0.6398 12 7 -0.3335 -5.2614 0.0969 13 6 -1.2734 -5.8931 0.8276 14 8 -1.5562 -5.4854 1.9373 15 6 -1.9595 -7.0825 0.2800 16 6 -1.6351 -7.5650 -1.0108 17 6 -2.2637 -8.6504 -1.5048 18 7 -3.2147 -9.2968 -0.7774 19 7 -4.0203 -10.4200 -1.0151 20 7 -4.7528 -10.5879 0.0330 21 7 -4.5001 -9.6888 0.9163 22 6 -3.5610 -8.8636 0.4738 23 6 -2.9266 -7.7370 1.0238 24 6 -0.1058 -2.7570 0.0023 25 1 -0.4850 0.8401 -0.0004 26 1 2.5623 -4.0324 0.6546 27 1 1.8318 -4.2351 -0.9981 28 1 0.3593 -4.0639 1.7296 29 1 -0.1075 -5.5869 -0.7884 30 1 -0.8821 -7.0632 -1.6004 31 1 -2.0093 -9.0115 -2.4904 32 1 -3.1905 -7.3861 2.0105 33 1 -0.5320 -2.8717 -0.9943 34 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030783874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:05 Heat of formation + Delta-G solvation = 180.370656 kcal Electronic energy + Delta-G solvation = -21379.163373 eV Core-core repulsion = 17931.778325 eV Total energy + Delta-G solvation = -3447.385048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.74200 -40.33623 -38.70920 -37.62731 -34.34965 -33.99117 -32.55671 -31.78507 -30.89794 -27.79474 -25.81471 -25.14427 -24.99957 -23.22660 -23.14677 -21.18565 -19.93427 -18.95530 -18.33951 -17.23938 -17.20954 -16.88064 -16.06545 -15.47932 -15.21428 -15.13409 -14.75185 -14.10851 -13.93690 -13.73318 -13.42307 -12.87417 -12.84357 -12.38673 -12.08924 -11.92552 -11.62889 -11.60482 -11.41961 -11.00229 -10.90610 -10.62838 -10.56735 -10.25680 -10.01842 -9.67619 -9.08705 -8.92392 -8.73855 -7.05458 -5.88584 -3.23218 -0.31961 -0.02024 1.28326 1.70002 2.22210 2.76620 3.12438 3.32300 3.34919 3.38325 3.40304 3.67057 3.89506 4.16021 4.36398 4.42314 4.53654 4.85176 4.97022 5.02302 5.20197 5.31106 5.33499 5.39170 5.50813 5.81679 5.85721 6.01193 6.18911 6.35833 6.46990 7.08075 7.15146 7.38208 7.51464 7.84627 7.97148 8.07332 8.91376 9.57950 10.41587 11.28009 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.048216 B = 0.002846 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.582698 B = 9837.395734 C = 9988.918214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.089 3.911 12 N -0.701 5.701 13 C 0.555 3.445 14 O -0.519 6.519 15 C -0.063 4.063 16 C -0.112 4.112 17 C 0.106 3.894 18 N -0.296 5.296 19 N -0.111 5.111 20 N -0.009 5.009 21 N -0.314 5.314 22 C 0.239 3.761 23 C -0.026 4.026 24 C 0.154 3.846 25 H 0.256 0.744 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.116 0.884 29 H 0.397 0.603 30 H 0.174 0.826 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.030 0.970 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -16.659 -4.097 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.101 0.899 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.015 4.015 12 N -0.351 5.351 13 C 0.339 3.661 14 O -0.395 6.395 15 C -0.075 4.075 16 C -0.136 4.136 17 C -0.021 4.021 18 N -0.076 5.076 19 N -0.094 5.094 20 N -0.002 5.002 21 N -0.175 5.175 22 C -0.015 4.015 23 C -0.050 4.050 24 C 0.028 3.972 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.133 0.867 29 H 0.232 0.768 30 H 0.191 0.809 31 H 0.205 0.795 32 H 0.199 0.801 33 H 0.048 0.952 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.322 -17.272 -3.367 17.908 hybrid contribution 1.184 1.407 -0.920 2.056 sum -2.138 -15.865 -4.287 16.573 Atomic orbital electron populations 1.69811 1.05074 1.25687 1.55800 1.24831 0.95716 0.97731 1.01884 0.86083 0.78663 0.83147 0.77613 1.21516 1.21496 1.20486 1.18973 0.90269 0.81484 1.44897 0.89948 1.45697 1.02312 0.99163 1.86061 1.22869 0.94406 0.86970 0.97100 1.24129 0.93502 0.83568 1.00285 1.46099 1.38820 1.30676 1.19548 1.17772 0.80465 0.82356 0.85526 1.90858 1.63589 1.65806 1.19282 1.20539 0.96366 0.96511 0.94114 1.21266 1.01083 0.95563 0.95678 1.21578 0.88753 0.93277 0.98477 1.49043 1.25476 1.19944 1.13136 1.82808 1.06567 1.00819 1.19211 1.77890 1.13189 1.14186 0.94910 1.75269 1.15578 1.03809 1.22803 1.22786 0.96013 0.97897 0.84814 1.20830 0.92804 0.89451 1.01944 1.22728 0.88341 0.88841 0.97327 0.93406 0.92981 0.94643 0.86661 0.76798 0.80913 0.79484 0.80061 0.95207 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 11.39 55.49 0.63 -25.60 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -6.08 10.70 -15.05 -0.16 -6.24 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -14.32 3.70 -177.92 -0.66 -14.98 16 10 C 0.11 1.97 8.69 -2.97 -0.03 1.95 16 11 C 0.09 1.48 4.40 -70.16 -0.31 1.18 16 12 N -0.70 -8.23 5.33 -56.31 -0.30 -8.53 16 13 C 0.55 6.82 7.78 -12.34 -0.10 6.72 16 14 O -0.52 -8.57 15.99 5.31 0.08 -8.48 16 15 C -0.06 -0.56 5.90 -104.63 -0.62 -1.18 16 16 C -0.11 -0.60 9.48 -39.52 -0.37 -0.98 16 17 C 0.11 0.61 11.19 -16.89 -0.19 0.42 16 18 N -0.30 -2.94 3.94 -12.43 -0.05 -2.99 16 19 N -0.11 -1.36 13.98 60.35 0.84 -0.51 16 20 N -0.01 -0.12 13.35 60.35 0.81 0.69 16 21 N -0.31 -4.23 12.27 31.03 0.38 -3.85 16 22 C 0.24 2.68 8.02 -156.36 -1.25 1.43 16 23 C -0.03 -0.26 9.70 -38.65 -0.37 -0.63 16 24 C 0.15 3.32 7.32 -2.85 -0.02 3.30 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.12 2.11 7.50 -51.93 -0.39 1.72 16 29 H 0.40 3.19 6.78 -40.82 -0.28 2.91 16 30 H 0.17 0.35 6.46 -52.49 -0.34 0.01 16 31 H 0.19 0.39 8.06 -52.48 -0.42 -0.03 16 32 H 0.18 1.73 7.67 -52.49 -0.40 1.33 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.99 7.17 -51.93 -0.37 1.62 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -34.23 303.69 -5.24 -39.47 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.02 Total: -1.79 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.52 Total: 5.76 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 1.65 Total: -55.80 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.23 -5.24 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030783874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.838 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds