Wall clock time and date at job start Tue Mar 31 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47360 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47109 * 120.00420 * 3 2 1 6 6 H 1.48508 * 109.47088 * 240.00066 * 3 2 1 7 7 C 1.37871 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00241 * 359.97438 * 7 2 1 10 10 O 1.42901 * 112.94231 * 50.33699 * 9 7 2 11 11 C 1.53947 * 113.74261 * 278.74243 * 9 7 2 12 12 N 1.47811 * 86.03557 * 222.08492 * 11 9 7 13 13 C 1.34779 * 134.45653 * 204.64564 * 12 11 9 14 14 O 1.21591 * 120.00231 * 174.26735 * 13 12 11 15 15 C 1.47599 * 119.99794 * 354.27187 * 13 12 11 16 16 C 1.41825 * 119.98078 * 172.75243 * 15 13 12 17 17 C 1.35637 * 119.59699 * 179.71518 * 16 15 13 18 18 C 1.41050 * 119.40418 * 0.55443 * 17 16 15 19 19 N 1.32185 * 133.25602 * 179.74066 * 18 17 16 20 20 N 1.28651 * 109.56464 * 179.97438 * 19 18 17 21 21 C 1.30722 * 110.34500 * 0.02562 * 20 19 18 22 22 N 1.36256 * 107.44940 * 359.97438 * 21 20 19 23 23 C 1.35849 * 133.52810 * 180.02562 * 22 21 20 24 24 C 1.47575 * 91.05376 * 24.54654 * 12 11 9 25 25 H 0.96999 * 120.00152 * 359.97438 * 1 2 3 26 26 H 0.96706 * 113.99882 * 309.65957 * 10 9 7 27 27 H 1.09002 * 113.77026 * 336.34711 * 11 9 7 28 28 H 1.09001 * 113.76965 * 107.74720 * 11 9 7 29 29 H 1.07997 * 120.19618 * 359.97438 * 16 15 13 30 30 H 1.08006 * 120.29878 * 180.26588 * 17 16 15 31 31 H 1.07992 * 126.27686 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.80781 * 359.95504 * 23 22 21 33 33 H 1.08999 * 113.77053 * 221.15122 * 24 12 11 34 34 H 1.09000 * 113.87080 * 89.76953 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.2447 -2.5613 -1.0132 11 6 0.7562 -2.9291 1.3924 12 7 1.1920 -4.2899 1.0141 13 6 0.8428 -5.5338 1.3980 14 8 1.3110 -6.5001 0.8275 15 6 -0.1082 -5.7230 2.5109 16 6 -0.5941 -7.0202 2.8151 17 6 -1.4633 -7.1859 3.8431 18 6 -1.8792 -6.0616 4.5864 19 7 -2.6978 -5.9065 5.6126 20 7 -2.7486 -4.6631 5.9390 21 6 -1.9787 -3.9555 5.1547 22 7 -1.3989 -4.8133 4.2689 23 6 -0.5241 -4.6485 3.2427 24 6 2.1608 -3.7401 0.0462 25 1 -0.4850 0.8400 0.0004 26 1 -0.3475 -1.7969 -1.0267 27 1 1.3274 -2.4974 2.2142 28 1 -0.3214 -2.8327 1.5249 29 1 -0.2708 -7.8714 2.2344 30 1 -1.8372 -8.1693 4.0874 31 1 -1.8289 -2.8870 5.2008 32 1 -0.1557 -3.6617 3.0045 33 1 2.2026 -4.2899 -0.8941 34 1 3.1463 -3.5467 0.4699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116700252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:07 Heat of formation + Delta-G solvation = 75.959699 kcal Electronic energy + Delta-G solvation = -22396.108739 eV Core-core repulsion = 18911.903341 eV Total energy + Delta-G solvation = -3484.205398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.64407 -40.13464 -38.28563 -37.22142 -34.34418 -34.01664 -32.40808 -31.72114 -29.81387 -28.51637 -25.90185 -25.76014 -24.57793 -23.52827 -22.55592 -20.69302 -19.16891 -18.12203 -17.91880 -17.45057 -16.66664 -16.60651 -15.72618 -15.21570 -15.19391 -14.92866 -14.89489 -14.22501 -13.84152 -13.37706 -12.88958 -12.67469 -12.48756 -12.18904 -12.14838 -11.82017 -11.75793 -11.39862 -11.29278 -11.17058 -10.73607 -10.66898 -10.49588 -10.02234 -9.70797 -9.51495 -8.94926 -8.67596 -8.32475 -8.14249 -6.56979 -4.68322 0.30602 0.80734 2.11865 2.42694 2.90538 3.05230 3.08552 3.12727 3.16540 3.53636 3.90237 4.04724 4.22533 4.34772 4.57958 4.64692 4.69253 4.76624 5.13531 5.32162 5.46404 5.60024 5.69576 5.77397 5.83730 5.93466 6.08006 6.11448 6.13946 6.31582 6.39248 6.63605 6.84759 7.45627 7.60906 8.07829 8.34677 8.36095 8.37868 9.03808 9.22239 10.49779 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.004913 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.558564 B = 5698.045285 C = 6812.803535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.245 3.755 10 O -0.570 6.570 11 C 0.058 3.942 12 N -0.627 5.627 13 C 0.580 3.420 14 O -0.546 6.546 15 C -0.135 4.135 16 C -0.041 4.041 17 C -0.093 4.093 18 C 0.201 3.799 19 N -0.296 5.296 20 N -0.254 5.254 21 C 0.125 3.875 22 N -0.394 5.394 23 C 0.100 3.900 24 C 0.115 3.885 25 H 0.275 0.725 26 H 0.393 0.607 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.230 0.770 32 H 0.192 0.808 33 H 0.076 0.924 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -5.006 5.754 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.065 4.065 12 N -0.360 5.360 13 C 0.368 3.632 14 O -0.426 6.426 15 C -0.142 4.142 16 C -0.066 4.066 17 C -0.114 4.114 18 C -0.048 4.048 19 N -0.141 5.141 20 N -0.092 5.092 21 C -0.158 4.158 22 N -0.074 5.074 23 C -0.025 4.025 24 C -0.006 4.006 25 H 0.086 0.914 26 H 0.248 0.752 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.247 0.753 32 H 0.209 0.791 33 H 0.095 0.905 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.292 -6.362 6.644 9.289 hybrid contribution 0.937 1.936 -0.719 2.267 sum -0.356 -4.427 5.924 7.404 Atomic orbital electron populations 1.69372 1.06201 1.28582 1.49614 1.25067 0.95038 0.99968 0.92807 0.86374 0.79537 0.81475 0.79120 1.20928 1.19831 1.19732 1.21448 0.94009 0.89730 1.52718 0.90866 1.19779 0.85607 0.91410 0.82929 1.86087 1.47028 1.49942 1.55154 1.24638 0.99946 0.77801 1.04067 1.50171 1.40113 1.04235 1.41438 1.17263 0.81345 0.82376 0.82207 1.90760 1.56733 1.39107 1.56001 1.19805 1.01934 0.93405 0.99034 1.21214 0.93457 0.96762 0.95142 1.20161 0.99498 0.96612 0.95164 1.22601 0.97930 0.86505 0.97797 1.74901 1.18208 1.09535 1.11487 1.74150 1.16210 0.98104 1.20731 1.26674 0.98764 0.99340 0.91008 1.43909 1.30577 1.09897 1.23038 1.22832 0.90306 1.02643 0.86670 1.23540 0.93190 0.92470 0.91422 0.91428 0.75195 0.89136 0.90692 0.82326 0.82044 0.75331 0.79137 0.90533 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.70 11.20 55.43 0.62 -20.08 16 2 C 0.07 1.68 5.39 -17.82 -0.10 1.59 16 3 Si 0.91 17.96 29.54 -169.99 -5.02 12.94 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.54 -12.18 8.61 -34.44 -0.30 -12.48 16 8 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.24 5.18 1.40 -90.85 -0.13 5.05 16 10 O -0.57 -13.32 13.48 -35.23 -0.48 -13.79 16 11 C 0.06 1.03 5.59 -2.84 -0.02 1.02 16 12 N -0.63 -11.43 3.60 -179.33 -0.64 -12.07 16 13 C 0.58 10.39 7.97 -12.44 -0.10 10.29 16 14 O -0.55 -11.15 17.12 5.29 0.09 -11.06 16 15 C -0.13 -1.99 5.84 -105.34 -0.61 -2.61 16 16 C -0.04 -0.52 9.59 -39.14 -0.38 -0.89 16 17 C -0.09 -1.11 10.09 -39.45 -0.40 -1.51 16 18 C 0.20 2.92 7.92 -155.95 -1.23 1.69 16 19 N -0.30 -4.81 12.29 31.19 0.38 -4.42 16 20 N -0.25 -3.95 12.18 29.87 0.36 -3.59 16 21 C 0.12 1.59 12.97 -89.07 -1.16 0.43 16 22 N -0.39 -5.41 2.94 -63.63 -0.19 -5.60 16 23 C 0.10 1.36 10.06 -16.40 -0.16 1.20 16 24 C 0.12 2.19 8.23 -2.97 -0.02 2.17 16 25 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 26 H 0.39 9.29 6.60 45.56 0.30 9.59 16 27 H 0.09 1.48 8.00 -51.93 -0.42 1.06 16 28 H 0.07 1.31 6.93 -51.93 -0.36 0.95 16 29 H 0.16 1.81 7.70 -52.49 -0.40 1.40 16 30 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 31 H 0.23 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.19 2.45 3.98 -52.49 -0.21 2.24 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -28.23 299.03 -7.29 -35.52 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -2.32 Total: 11.70 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -4.60 Total: 5.94 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.54 Total: -45.76 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.38 Total: -24.85 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.23 -7.29 -35.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116700252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds