Wall clock time and date at job start Tue Mar 31 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47305 * 240.00507 * 3 2 1 5 5 H 1.48508 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47114 * 119.99861 * 3 2 1 7 7 C 1.40024 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00709 * 170.11755 * 7 2 1 9 9 C 1.41552 * 119.99931 * 350.11245 * 7 2 1 10 10 C 1.41174 * 120.99371 * 151.70042 * 9 7 2 11 11 C 1.37593 * 119.01243 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10798 * 359.72347 * 11 10 9 13 13 C 1.32471 * 122.23592 * 0.57615 * 12 11 10 14 14 N 1.39470 * 119.58418 * 179.70360 * 13 12 11 15 15 C 1.34778 * 119.99908 * 354.33093 * 14 13 12 16 16 O 1.21272 * 119.99635 * 4.71760 * 15 14 13 17 17 C 1.50691 * 119.99751 * 184.72202 * 15 14 13 18 18 C 1.53001 * 109.47052 * 179.97438 * 17 15 14 19 19 N 1.46496 * 109.47373 * 179.97438 * 18 17 15 20 20 C 1.34604 * 126.43877 * 124.99884 * 19 18 17 21 21 N 1.31072 * 106.67626 * 179.97438 * 20 19 18 22 22 N 1.28845 * 107.99502 * 0.02562 * 21 20 19 23 23 N 1.28736 * 109.39215 * 359.73046 * 22 21 20 24 24 C 1.38601 * 120.83578 * 359.42194 * 13 12 11 25 25 H 0.96996 * 120.00684 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.49686 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.44585 * 179.97438 * 11 10 9 28 28 H 0.96992 * 119.99684 * 174.05779 * 14 13 12 29 29 H 1.08997 * 109.47039 * 299.99702 * 17 15 14 30 30 H 1.08996 * 109.47475 * 60.00248 * 17 15 14 31 31 H 1.09005 * 109.46815 * 299.99497 * 18 17 15 32 32 H 1.09004 * 109.47219 * 59.99399 * 18 17 15 33 33 H 1.07994 * 126.66042 * 359.96689 * 20 19 18 34 34 H 1.08001 * 120.60271 * 180.29604 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0756 -1.2195 -0.1611 9 6 1.3157 -2.4295 0.2094 10 6 1.7910 -3.6401 -0.3397 11 6 1.0859 -4.7992 -0.1104 12 7 -0.0176 -4.7943 0.6154 13 6 -0.5083 -3.6850 1.1478 14 7 -1.6814 -3.7426 1.8999 15 6 -2.3702 -4.8979 1.9866 16 8 -1.9264 -5.9076 1.4826 17 6 -3.6917 -4.9346 2.7098 18 6 -4.2602 -6.3543 2.6615 19 7 -5.5446 -6.3902 3.3651 20 6 -6.7178 -6.8218 2.8659 21 7 -7.6060 -6.6840 3.8200 22 7 -7.0096 -6.1928 4.8511 23 7 -5.7629 -6.0191 4.5813 24 6 0.1325 -2.4687 0.9717 25 1 -0.4851 0.8400 0.0004 26 1 2.6946 -3.6563 -0.9310 27 1 1.4430 -5.7291 -0.5274 28 1 -1.9994 -2.9523 2.3636 29 1 -3.5462 -4.6362 3.7480 30 1 -4.3884 -4.2482 2.2287 31 1 -4.4059 -6.6522 1.6232 32 1 -3.5636 -7.0411 3.1423 33 1 -6.8932 -7.2068 1.8723 34 1 -0.2684 -1.5673 1.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127012677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:55 Heat of formation + Delta-G solvation = 121.093341 kcal Electronic energy + Delta-G solvation = -21200.248421 eV Core-core repulsion = 17750.292916 eV Total energy + Delta-G solvation = -3449.955506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.36826 -39.91157 -38.10232 -36.20891 -34.49524 -33.88144 -32.71427 -31.71127 -30.62827 -28.80966 -26.16843 -25.94094 -24.02355 -22.94293 -22.10003 -21.41264 -19.83622 -18.20161 -17.83251 -17.27454 -16.71818 -16.14745 -15.81150 -15.64943 -15.31229 -14.32349 -14.14872 -14.11559 -13.94666 -13.27382 -12.95816 -12.91138 -12.69310 -12.45791 -12.28239 -11.75047 -11.50557 -11.37991 -11.28870 -11.07488 -10.99847 -10.55399 -10.42209 -10.27623 -9.93487 -9.67797 -9.48518 -8.07966 -7.90831 -7.19019 -6.87631 -4.72955 1.03517 1.71286 2.04728 2.33372 2.71424 2.95764 2.98325 3.04596 3.25742 3.37027 3.78556 3.96535 4.02317 4.29563 4.55998 4.60316 4.70446 4.96932 5.10251 5.25648 5.35881 5.52234 5.54977 5.82838 5.91198 6.42451 6.47988 6.67235 6.82490 7.00666 7.23095 7.31152 7.58752 7.79568 8.05522 8.27314 8.39139 8.53688 8.63310 8.67268 9.51369 10.00985 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003079 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.438335 B = 9091.543521 C = 9927.968195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.279 4.279 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.331 3.669 14 N -0.653 5.653 15 C 0.507 3.493 16 O -0.484 6.484 17 C -0.158 4.158 18 C 0.131 3.869 19 N -0.306 5.306 20 C 0.161 3.839 21 N -0.311 5.311 22 N -0.080 5.080 23 N -0.092 5.092 24 C -0.234 4.234 25 H 0.282 0.718 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.410 0.590 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.235 0.765 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -5.273 2.552 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.302 4.302 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.106 3.894 14 N -0.298 5.298 15 C 0.290 3.710 16 O -0.355 6.355 17 C -0.199 4.199 18 C 0.010 3.990 19 N -0.108 5.108 20 C -0.137 4.137 21 N -0.160 5.160 22 N -0.074 5.074 23 N -0.078 5.078 24 C -0.259 4.259 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.245 0.755 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.251 0.749 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.485 -6.325 3.628 11.188 hybrid contribution 1.057 1.890 -1.023 2.395 sum -7.428 -4.436 2.605 9.035 Atomic orbital electron populations 1.69720 1.07574 1.29473 1.35408 1.25940 0.94892 1.01461 0.91925 0.86248 0.80001 0.79719 0.80097 1.18864 1.20223 1.18738 1.19551 0.95892 0.89980 1.43314 0.89995 1.17591 0.90174 0.92315 0.86452 1.21969 1.04490 0.94600 1.09179 1.21765 0.90670 0.96582 0.94711 1.67180 1.15499 1.27963 1.16576 1.18168 0.86726 0.90966 0.93500 1.43352 1.23788 1.12937 1.49760 1.20073 0.85403 0.84204 0.81293 1.90817 1.68310 1.32175 1.44173 1.21924 0.96785 0.96851 1.04336 1.22049 0.79181 0.99401 0.98386 1.48871 1.11911 1.40496 1.09499 1.27783 0.81427 1.01373 1.03149 1.75000 1.26720 1.16570 0.97703 1.78647 0.96872 1.13168 1.18734 1.78882 1.13991 1.17534 0.97402 1.21609 1.01508 0.95307 1.07483 0.90661 0.87824 0.85749 0.75459 0.87145 0.87973 0.85688 0.86466 0.74870 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.84 10.83 55.55 0.60 -18.24 16 2 C 0.08 1.77 5.30 -17.35 -0.09 1.68 16 3 Si 0.92 17.35 29.57 -169.99 -5.03 12.33 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.46 -11.24 9.13 -37.65 -0.34 -11.59 16 8 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 9 C 0.14 3.58 5.58 -106.55 -0.59 2.99 16 10 C -0.28 -6.48 9.90 -38.70 -0.38 -6.87 16 11 C 0.12 2.63 11.15 -17.68 -0.20 2.43 16 12 N -0.55 -13.03 7.85 -12.52 -0.10 -13.13 16 13 C 0.33 7.38 7.41 -154.70 -1.15 6.23 16 14 N -0.65 -11.17 5.39 -11.49 -0.06 -11.23 16 15 C 0.51 7.70 7.79 -10.99 -0.09 7.62 16 16 O -0.48 -9.13 14.24 5.56 0.08 -9.05 16 17 C -0.16 -1.52 5.85 -27.89 -0.16 -1.68 16 18 C 0.13 1.08 5.77 -4.04 -0.02 1.06 16 19 N -0.31 -2.90 3.44 -62.55 -0.22 -3.11 16 20 C 0.16 1.35 12.79 -90.38 -1.16 0.20 16 21 N -0.31 -3.80 12.36 29.59 0.37 -3.44 16 22 N -0.08 -1.11 13.43 60.35 0.81 -0.30 16 23 N -0.09 -1.14 13.08 60.35 0.79 -0.35 16 24 C -0.23 -5.57 8.59 -38.48 -0.33 -5.90 16 25 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 26 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 28 H 0.41 5.68 8.70 -40.82 -0.36 5.32 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.13 0.81 8.04 -51.93 -0.42 0.39 16 32 H 0.12 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.24 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 3.08 6.27 -52.49 -0.33 2.75 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -32.37 308.48 -5.81 -38.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.18 Total: 7.55 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.52 Total: -3.84 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 2.19 Total: -49.81 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.37 -5.81 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127012677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.273 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds