Wall clock time and date at job start Tue Mar 31 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99804 * 2 1 4 4 H 1.48498 * 109.47305 * 240.00507 * 3 2 1 5 5 H 1.48508 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47114 * 119.99861 * 3 2 1 7 7 C 1.40024 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00709 * 170.11755 * 7 2 1 9 9 C 1.41552 * 119.99931 * 350.11245 * 7 2 1 10 10 C 1.41174 * 120.99371 * 151.70042 * 9 7 2 11 11 C 1.37593 * 119.01243 * 180.02562 * 10 9 7 12 12 N 1.32077 * 121.10798 * 359.72347 * 11 10 9 13 13 C 1.32471 * 122.23592 * 0.57615 * 12 11 10 14 14 N 1.39470 * 119.58418 * 179.70360 * 13 12 11 15 15 C 1.34778 * 119.99908 * 354.33093 * 14 13 12 16 16 O 1.21272 * 119.99635 * 4.71760 * 15 14 13 17 17 C 1.50691 * 119.99751 * 184.72202 * 15 14 13 18 18 C 1.53001 * 109.47052 * 179.97438 * 17 15 14 19 19 N 1.46496 * 109.47373 * 179.97438 * 18 17 15 20 20 C 1.34604 * 126.43877 * 124.99884 * 19 18 17 21 21 N 1.31072 * 106.67626 * 179.97438 * 20 19 18 22 22 N 1.28845 * 107.99502 * 0.02562 * 21 20 19 23 23 N 1.28736 * 109.39215 * 359.73046 * 22 21 20 24 24 C 1.38601 * 120.83578 * 359.42194 * 13 12 11 25 25 H 0.96996 * 120.00684 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.49686 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.44585 * 179.97438 * 11 10 9 28 28 H 0.96992 * 119.99684 * 174.05779 * 14 13 12 29 29 H 1.08997 * 109.47039 * 299.99702 * 17 15 14 30 30 H 1.08996 * 109.47475 * 60.00248 * 17 15 14 31 31 H 1.09005 * 109.46815 * 299.99497 * 18 17 15 32 32 H 1.09004 * 109.47219 * 59.99399 * 18 17 15 33 33 H 1.07994 * 126.66042 * 359.96689 * 20 19 18 34 34 H 1.08001 * 120.60271 * 180.29604 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0756 -1.2195 -0.1611 9 6 1.3157 -2.4295 0.2094 10 6 1.7910 -3.6401 -0.3397 11 6 1.0859 -4.7992 -0.1104 12 7 -0.0176 -4.7943 0.6154 13 6 -0.5083 -3.6850 1.1478 14 7 -1.6814 -3.7426 1.8999 15 6 -2.3702 -4.8979 1.9866 16 8 -1.9264 -5.9076 1.4826 17 6 -3.6917 -4.9346 2.7098 18 6 -4.2602 -6.3543 2.6615 19 7 -5.5446 -6.3902 3.3651 20 6 -6.7178 -6.8218 2.8659 21 7 -7.6060 -6.6840 3.8200 22 7 -7.0096 -6.1928 4.8511 23 7 -5.7629 -6.0191 4.5813 24 6 0.1325 -2.4687 0.9717 25 1 -0.4851 0.8400 0.0004 26 1 2.6946 -3.6563 -0.9310 27 1 1.4430 -5.7291 -0.5274 28 1 -1.9994 -2.9523 2.3636 29 1 -3.5462 -4.6362 3.7480 30 1 -4.3884 -4.2482 2.2287 31 1 -4.4059 -6.6522 1.6232 32 1 -3.5636 -7.0411 3.1423 33 1 -6.8932 -7.2068 1.8723 34 1 -0.2684 -1.5673 1.4114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127012677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:55 Heat of formation + Delta-G solvation = 100.009044 kcal Electronic energy + Delta-G solvation = -21201.162705 eV Core-core repulsion = 17750.292916 eV Total energy + Delta-G solvation = -3450.869789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.17321 -41.32267 -39.67773 -37.08250 -36.11053 -35.49001 -33.54173 -32.70993 -32.34224 -30.37866 -27.91562 -26.94590 -24.81286 -24.02500 -23.79318 -22.75921 -21.23742 -19.49243 -19.05503 -18.23547 -17.90040 -17.32816 -16.95726 -16.83837 -16.65917 -16.06317 -15.70744 -15.31903 -15.16288 -14.56068 -14.34858 -14.25802 -14.03213 -13.63389 -13.23407 -13.15657 -12.88330 -12.68588 -12.52791 -12.20145 -12.11352 -11.93424 -11.86057 -11.49840 -11.36078 -11.17432 -11.08007 -9.90560 -9.64678 -8.87795 -8.60968 -6.57975 0.27754 0.71495 0.98338 0.99908 1.22957 1.41489 1.51753 1.54250 1.81702 2.13967 2.20257 2.82146 3.24091 3.44755 3.54913 3.64055 3.72624 3.88248 4.19050 4.29799 4.36736 4.47972 4.64291 4.74224 4.80656 4.84190 4.91878 5.08380 5.22964 5.24090 5.46949 5.62514 5.91568 6.12411 6.44887 6.58124 6.78402 6.83946 7.22434 7.56588 7.79402 8.28899 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.003079 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.438335 B = 9091.543521 C = 9927.968195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.113 3.887 10 C -0.295 4.295 11 C 0.113 3.887 12 N -0.570 5.570 13 C 0.332 3.668 14 N -0.652 5.652 15 C 0.509 3.491 16 O -0.519 6.519 17 C -0.140 4.140 18 C 0.134 3.866 19 N -0.302 5.302 20 C 0.183 3.817 21 N -0.344 5.344 22 N -0.112 5.112 23 N -0.111 5.111 24 C -0.254 4.254 25 H 0.291 0.709 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.424 0.576 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.286 0.714 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -5.125 2.092 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.319 4.319 11 C -0.041 4.041 12 N -0.290 5.290 13 C 0.106 3.894 14 N -0.299 5.299 15 C 0.295 3.705 16 O -0.392 6.392 17 C -0.181 4.181 18 C 0.014 3.986 19 N -0.104 5.104 20 C -0.115 4.115 21 N -0.192 5.192 22 N -0.106 5.106 23 N -0.098 5.098 24 C -0.279 4.279 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.170 0.830 28 H 0.262 0.738 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.301 0.699 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.218 -6.181 3.191 11.548 hybrid contribution 1.245 1.756 -0.924 2.342 sum -7.973 -4.426 2.267 9.396 Atomic orbital electron populations 1.69762 1.08773 1.30807 1.35126 1.26744 0.95682 1.04342 0.90969 0.85180 0.78694 0.75432 0.80012 1.18595 1.19148 1.18463 1.19828 0.96187 0.90997 1.44847 0.89981 1.18022 0.91119 0.93269 0.87093 1.22149 1.05282 0.94573 1.09859 1.22238 0.90275 0.97461 0.94088 1.67342 1.16044 1.28351 1.17293 1.18408 0.87782 0.90211 0.92971 1.43436 1.22523 1.14591 1.49310 1.20901 0.86464 0.82755 0.80397 1.90798 1.69521 1.33205 1.45653 1.21795 0.93622 0.98566 1.04081 1.22131 0.78695 0.98242 0.99561 1.48904 1.12520 1.40210 1.08777 1.28694 0.79997 0.98849 1.03927 1.74939 1.28090 1.17805 0.98406 1.78631 0.97521 1.14458 1.19982 1.78825 1.13725 1.18324 0.98899 1.21589 1.02049 0.95802 1.08466 0.89846 0.86712 0.82992 0.73832 0.86151 0.85815 0.83189 0.86698 0.69915 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.85 10.83 21.84 0.24 -38.61 16 2 C 0.04 1.80 5.30 85.29 0.45 2.25 16 3 Si 0.99 35.09 29.57 68.60 2.03 37.12 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.49 -24.46 9.13 23.52 0.21 -24.25 16 8 H 0.08 3.95 7.87 -2.91 -0.02 3.92 16 9 C 0.11 5.79 5.58 -21.11 -0.12 5.68 16 10 C -0.29 -13.91 9.90 22.84 0.23 -13.68 16 11 C 0.11 5.07 11.15 84.50 0.94 6.01 16 12 N -0.57 -26.76 7.85 -193.53 -1.52 -28.28 16 13 C 0.33 14.85 7.41 132.75 0.98 15.84 16 14 N -0.65 -21.74 5.39 -308.67 -1.66 -23.40 16 15 C 0.51 14.61 7.79 87.65 0.68 15.29 16 16 O -0.52 -18.87 14.24 -3.00 -0.04 -18.92 16 17 C -0.14 -2.32 5.85 29.85 0.17 -2.14 16 18 C 0.13 1.81 5.77 86.38 0.50 2.31 16 19 N -0.30 -4.91 3.44 -351.81 -1.21 -6.12 16 20 C 0.18 2.49 12.79 180.27 2.31 4.79 16 21 N -0.34 -7.84 12.36 -60.29 -0.74 -8.59 16 22 N -0.11 -3.02 13.43 37.01 0.50 -2.52 16 23 N -0.11 -2.60 13.08 37.02 0.48 -2.12 16 24 C -0.25 -12.31 8.59 22.99 0.20 -12.12 16 25 H 0.29 12.42 8.29 -92.71 -0.77 11.65 16 26 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.15 5.76 8.06 -2.91 -0.02 5.73 16 28 H 0.42 11.34 8.70 -92.71 -0.81 10.54 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.15 1.34 8.04 -2.38 -0.02 1.32 16 32 H 0.11 1.69 8.10 -2.38 -0.02 1.67 16 33 H 0.29 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.12 6.02 6.27 -2.91 -0.02 6.00 16 Total: -1.00 -71.96 308.48 4.98 -66.98 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.36 Total: 24.48 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.56 Total: -0.02 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.92 Total: -109.64 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.04 Total: -18.92 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -71.96 4.98 -66.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127012677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.985 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds